Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004911

Physical Location & Seq

Genomic Coordinates Reverse (-)

48773621 .. 48776944

Gene Structure 3324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1391700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGTCACCGCCACTGCTTGGTGTTGGTGAGGAGGAGGGTCAGAGCGATGTTACATTTTTGTCTTCTTCGGGTTCTATGGAGAGTGTATGCCAAAACAGTTCGGAATTGAAGGAGCAAAATTACATGGGATTATCTGATTGTTCTTCGGTAGGCAGTTCAAATGTCTCTACAGCCTCTGATGGAAGTAATAGTAGTCTGAATTTGAAGGCCACAGAACTTAGACTCGGGCTTCCTGGATCCCAGTCTCCCAAGAGAGACTCAGATTCGAGGGTAATCACCACTCAACTTGATGAGAAGCCCCTATTCCCGCTGCATCCTTTAAAGGATGGCCACTATTCTTCATCGCAGAAAATAGTTGTTTCGGGAAACAAGAGAGGTTTCTCCGATGCTATGGATGAGTTCTCAGAGGGGAAATATGCTAATTCAGAGGTAAACCTGTTGCTGTCACCCAGACCTTCTCCAAACTTGGGACTGAAATCTGGTTCTACACTTGAGAACCTTGGGACTCAACCACCCAAAACAAAAGAGGTGGCACCAGCAAAGGTAGTACAAGAGAGGCCTCATGCTGTCAATGATACCAGATCGAATCATACCGGAAATAGTACTAGGAGTGCACCTGCTTCCAAGGCGCAGGTTGTGGGTTGGCCACCTATAAGATCATTTAGGAAGAACTCATTGGCCACTACATCAAAAAACACTGAGGAAGTAGATGGAAAATCGAACCCTGGTGCTCTGTTTGTCAAGGTCAGCTTGGATGGTGCACCTTATTTGAGGAAAGTAGATTTGAAAAATTACTCTGCATACCAGGAACTTTCTTCTGCTCTTGAAAAGATGTTCAGCTGTTTTACCATAGGTCAATATGGATCTCATGGAGCTCCAGGCAGAGAGATTAGCGAAAGCAAGCTGAAAGATCTGCTTCATGGCTCAGAATATGTTCTAACTTACGAGGACAAAGATGGTGACTGGATGCTTGTGGGCGATGTTCCTTGGGACATGTTTACTGATACCTGCAAAAGGTTGAGGATTATGAAGAGCTCAGATGCCATCGGCCTAGCTCCTAGGGCCATGGAGAAGTGCAGGAACAGGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

364

Amino Acids

39.35

Weight (kDa)

6.62

Isoelectric Point (pI)

49.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	70 - 354	1.5e-88	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22670 AT2G22670 AT2G22670 AT2G22670 AT2G22670
fragaria_vesca	FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790
malus_domestica	MD08G1207300.v1.1 MD15G1391700.v1.1
prunus_persica	Prupe.1G540700_v2.0.a1
pyrus_communis	pycom08g17960 pycom15g35260
rosa_chinensis	RchiOBHm_Chr7g0233101
rosa_laevigata	RLG00000001299
rosa_multiflora	Rmu_co8377091.1_g000001 Rmu_sc0001362.1_g000019
rosa_roxburghii	Rroxscaffold_3G00227660
rosa_rugosa	Rorug07G0278100 Rorug07G0278200
rosa_samantha	Rh7AG433600 Rh7BG406400 Rh7CG452800 Rh7DG422000
rosa_wichuraiana	Rw7G035740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	625
Acc36I	ACCTGC	3 cut(s)	622, 625, 1016
AccB1I	GGYRCC	1 cut(s)	532
AccB7I	CCANNNNNTGG	1 cut(s)	17
AciI	CCGC	2 cut(s)	8, 308
AclWI	GGATC	3 cut(s)	231, 244, 871
AcoI	YGGCCR	3 cut(s)	328, 644, 678
AcsI	RAATTY	1 cut(s)	199
AfaI	GTAC	2 cut(s)	549, 604
AfiI	CCNNNNNNNGG	3 cut(s)	17, 467, 1014
AflIII	ACRYGT	1 cut(s)	993
AgsI	TTSAA	5 cut(s)	109, 159, 205, 787, 827
AjnI	CCWGG	4 cut(s)	232, 724, 804, 877
AjuI	GAANNNNNNNTTGG	2 cut(s)	659, 691
AluBI	AGCT	6 cut(s)	750, 840, 875, 904, 1035, 1055
AluI	AGCT	6 cut(s)	750, 840, 875, 904, 1035, 1055
Alw21I	GWGCWC	5 cut(s)	616, 733, 763, 877, 1037
Alw26I	GTCTC	3 cut(s)	169, 249, 249
Alw44I	GTGCAC	2 cut(s)	612, 759
AlwI	GGATC	3 cut(s)	231, 244, 871
AlwNI	CAGNNNCTG	1 cut(s)	176
Ama87I	CYCGRG	1 cut(s)	224
AoxI	GGCC	7 cut(s)	207, 328, 557, 644, 678, 1048, 1062
ApaLI	GTGCAC	2 cut(s)	612, 759
ApeKI	GCWGC	1 cut(s)	310
ApoI	RAATTY	1 cut(s)	199
Asp700I	GAANNNNTTC	1 cut(s)	933
AspA2I	CCTAGG	1 cut(s)	1058
AspLEI	GCGC	1 cut(s)	631
AspS9I	GGNCC	1 cut(s)	1062
AsuHPI	GGTGA	4 cut(s)	38, 268, 438, 971
AvaI	CYCGRG	1 cut(s)	224
AvrII	CCTAGG	1 cut(s)	1058
BaeGI	GKGCMC	2 cut(s)	616, 763
BalI	TGGCCA	3 cut(s)	330, 646, 680
BamHI	GGATCC	1 cut(s)	236
BanI	GGYRCC	1 cut(s)	532
BanII	GRGCYC	2 cut(s)	877, 1037
BbsI	GAAGAC	1 cut(s)	54
Bbv12I	GWGCWC	5 cut(s)	616, 733, 763, 877, 1037
BbvI	GCAGC	1 cut(s)	297
BccI	CCATC	6 cut(s)	173, 320, 704, 749, 950, 1052
BciT130I	CCWGG	4 cut(s)	234, 726, 806, 879
BcoDI	GTCTC	3 cut(s)	169, 249, 249
BfaI	CTAG	4 cut(s)	606, 1052, 1059, 1090
BfmI	CTRYAG	1 cut(s)	168
BfuAI	ACCTGC	3 cut(s)	622, 625, 1016
BglII	AGATCT	1 cut(s)	910
BisI	GCNGC	1 cut(s)	311
BlnI	CCTAGG	1 cut(s)	1058
BlsI	GCNGC	1 cut(s)	312
BmcAI	AGTACT	1 cut(s)	604
Bme1390I	CCNGG	4 cut(s)	234, 726, 806, 879
BmeT110I	CYCGRG	1 cut(s)	224
BmgT120I	GGNCC	1 cut(s)	1062
BmiI	GGNNCC	2 cut(s)	238, 534
BmrFI	CCNGG	4 cut(s)	234, 726, 806, 879
BmrI	ACTGGG	1 cut(s)	235
BmsI	GCATC	4 cut(s)	322, 376, 957, 1030
BmuI	ACTGGG	1 cut(s)	235
BpiI	GAAGAC	1 cut(s)	54
BpmI	CTGGAG	1 cut(s)	861
BpuEI	CTTGAG	1 cut(s)	512
BsaJI	CCNNGG	6 cut(s)	499, 624, 724, 986, 1058, 1065
BsaWI	WCCGGW	1 cut(s)	593
Bsc4I	CCNNNNNNNGG	3 cut(s)	17, 467, 1014
Bse1I	ACTGG	2 cut(s)	241, 968
BseBI	CCWGG	4 cut(s)	234, 726, 806, 879
BseDI	CCNNGG	6 cut(s)	499, 624, 724, 986, 1058, 1065
BseGI	GGATG	5 cut(s)	313, 331, 400, 760, 972
BseLI	CCNNNNNNNGG	3 cut(s)	17, 467, 1014
BseMII	CTCAG	5 cut(s)	273, 417, 690, 939, 1050
BseNI	ACTGG	2 cut(s)	241, 968
BseRI	GAGGAG	2 cut(s)	44, 47
BseSI	GKGCMC	2 cut(s)	616, 763
BseXI	GCAGC	1 cut(s)	297
BshFI	GGCC	7 cut(s)	209, 330, 559, 646, 680, 1050, 1064
BshNI	GGYRCC	1 cut(s)	532
BsiHKAI	GWGCWC	5 cut(s)	616, 733, 763, 877, 1037
BsiHKCI	CYCGRG	1 cut(s)	224
BsiSI	CCGG	1 cut(s)	594
BslFI	GGGAC	3 cut(s)	483, 517, 1004
BslI	CCNNNNNNNGG	3 cut(s)	17, 467, 1014
BsmAI	GTCTC	3 cut(s)	169, 249, 249
BsmFI	GGGAC	3 cut(s)	483, 517, 1004
BsnI	GGCC	7 cut(s)	209, 330, 559, 646, 680, 1050, 1064
BsoBI	CYCGRG	1 cut(s)	224
Bsp1286I	GDGCHC	5 cut(s)	616, 733, 763, 877, 1037
Bsp143I	GATC	5 cut(s)	236, 581, 656, 863, 910
Bsp19I	CCATGG	1 cut(s)	1065
BspACI	CCGC	2 cut(s)	8, 308
BspANI	GGCC	7 cut(s)	209, 330, 559, 646, 680, 1050, 1064
BspCNI	CTCAG	5 cut(s)	272, 416, 691, 938, 1049
BspLI	GGNNCC	2 cut(s)	238, 534
BspMI	ACCTGC	3 cut(s)	622, 625, 1016
BspPI	GGATC	3 cut(s)	231, 244, 871
BspQI	GCTCTTC	1 cut(s)	1025
BspT107I	GGYRCC	1 cut(s)	532
BsrI	ACTGG	2 cut(s)	241, 968
BssECI	CCNNGG	6 cut(s)	499, 624, 724, 986, 1058, 1065
BssMI	GATC	5 cut(s)	236, 581, 656, 863, 910
BssT1I	CCWWGG	5 cut(s)	499, 624, 986, 1058, 1065
Bst2UI	CCWGG	4 cut(s)	234, 726, 806, 879
Bst4CI	ACNGT	1 cut(s)	98
Bst6I	CTCTTC	1 cut(s)	1025
BstC8I	GCNNGC	1 cut(s)	902
BstDEI	CTNAG	6 cut(s)	218, 259, 403, 699, 925, 1036
BstDSI	CCRYGG	1 cut(s)	1065
BstENI	CCTNNNNNAGG	1 cut(s)	1012
BstF5I	GGATG	5 cut(s)	313, 331, 400, 760, 972
BstHHI	GCGC	1 cut(s)	631
BstKTI	GATC	5 cut(s)	239, 584, 659, 866, 913
BstMAI	GTCTC	3 cut(s)	169, 249, 249
BstMBI	GATC	5 cut(s)	236, 581, 656, 863, 910
BstMWI	GCNNNNNNNGC	2 cut(s)	626, 1061
BstNI	CCWGG	4 cut(s)	234, 726, 806, 879
BstNSI	RCATGY	1 cut(s)	997
BstSCI	CCNGG	4 cut(s)	232, 724, 804, 877
BstSFI	CTRYAG	1 cut(s)	168
BstSLI	GKGCMC	2 cut(s)	616, 763
BstV1I	GCAGC	1 cut(s)	297
BstV2I	GAAGAC	1 cut(s)	54
BstX2I	RGATCY	3 cut(s)	236, 863, 910
BstYI	RGATCY	3 cut(s)	236, 863, 910
BsuRI	GGCC	7 cut(s)	209, 330, 559, 646, 680, 1050, 1064
BtgI	CCRYGG	1 cut(s)	1065
BtgZI	GCGATG	3 cut(s)	60, 327, 993
BtsCI	GGATG	5 cut(s)	313, 331, 400, 760, 972
BtsI	GCAGTG	1 cut(s)	11
BtsIMutI	CAGTG	2 cut(s)	11, 696
BveI	ACCTGC	3 cut(s)	622, 625, 1016
Cac8I	GCNNGC	1 cut(s)	902
CaiI	CAGNNNCTG	1 cut(s)	176
CfoI	GCGC	1 cut(s)	631
Cfr13I	GGNCC	1 cut(s)	1062
Csp6I	GTAC	2 cut(s)	548, 603
CspCI	CAANNNNNGTGG	4 cut(s)	268, 303, 510, 545
CviAII	CATG	6 cut(s)	124, 563, 869, 920, 994, 1066
CviQI	GTAC	2 cut(s)	548, 603
DdeI	CTNAG	6 cut(s)	218, 259, 403, 699, 925, 1036
DpnI	GATC	5 cut(s)	238, 583, 658, 865, 912
DpnII	GATC	5 cut(s)	236, 581, 656, 863, 910
DraI	TTTAAA	1 cut(s)	321
EaeI	YGGCCR	3 cut(s)	328, 644, 678
Eam1104I	CTCTTC	1 cut(s)	1025
EarI	CTCTTC	1 cut(s)	1025
Ecl136II	GAGCTC	2 cut(s)	875, 1035
Eco130I	CCWWGG	5 cut(s)	499, 624, 986, 1058, 1065
Eco147I	AGGCCT	1 cut(s)	559
Eco24I	GRGCYC	2 cut(s)	877, 1037
Eco53kI	GAGCTC	2 cut(s)	875, 1035
Eco88I	CYCGRG	1 cut(s)	224
EcoICRI	GAGCTC	2 cut(s)	875, 1035
EcoNI	CCTNNNNNAGG	1 cut(s)	1012
EcoRII	CCWGG	4 cut(s)	232, 724, 804, 877
EcoT14I	CCWWGG	5 cut(s)	499, 624, 986, 1058, 1065
EcoT38I	GRGCYC	2 cut(s)	877, 1037
ErhI	CCWWGG	5 cut(s)	499, 624, 986, 1058, 1065
FaeI	CATG	6 cut(s)	127, 566, 872, 923, 997, 1069
FalI	AAGNNNNNCTT	4 cut(s)	734, 766, 900, 932
FaqI	GGGAC	3 cut(s)	483, 517, 1004
FatI	CATG	6 cut(s)	123, 562, 868, 919, 993, 1065
FauI	CCCGC	1 cut(s)	315
Fnu4HI	GCNGC	1 cut(s)	311
FokI	GGATG	5 cut(s)	300, 338, 407, 767, 979
FriOI	GRGCYC	2 cut(s)	877, 1037
Fsp4HI	GCNGC	1 cut(s)	311
FspBI	CTAG	4 cut(s)	606, 1052, 1059, 1090
GlaI	GCGC	1 cut(s)	630
GluI	GCNGC	1 cut(s)	311
GsuI	CTGGAG	1 cut(s)	861
HaeIII	GGCC	7 cut(s)	209, 330, 559, 646, 680, 1050, 1064
HapII	CCGG	1 cut(s)	594
HhaI	GCGC	1 cut(s)	631
Hin1II	CATG	6 cut(s)	127, 566, 872, 923, 997, 1069
Hin6I	GCGC	1 cut(s)	629
HinP1I	GCGC	1 cut(s)	629
HinfI	GANTC	5 cut(s)	222, 257, 263, 505, 586
HpaII	CCGG	1 cut(s)	594
HphI	GGTGA	4 cut(s)	38, 268, 438, 971
Hpy166II	GTNNAC	4 cut(s)	433, 614, 761, 999
Hpy188III	TCNNGA	2 cut(s)	363, 824
Hpy8I	GTNNAC	4 cut(s)	433, 614, 761, 999
HpyAV	CCTTC	3 cut(s)	103, 199, 465
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4V	TGCA	6 cut(s)	313, 614, 761, 800, 1011, 1077
HpyF10VI	GCNNNNNNNGC	2 cut(s)	626, 1061
HpyF3I	CTNAG	6 cut(s)	218, 259, 403, 699, 925, 1036
Hsp92II	CATG	6 cut(s)	127, 566, 872, 923, 997, 1069
HspAI	GCGC	1 cut(s)	629
Kzo9I	GATC	5 cut(s)	236, 581, 656, 863, 910
LguI	GCTCTTC	1 cut(s)	1025
LmnI	GCTCC	4 cut(s)	112, 872, 880, 1060
Lsp1109I	GCAGC	1 cut(s)	297
LweI	GCATC	4 cut(s)	322, 376, 957, 1030
MaeI	CTAG	4 cut(s)	606, 1052, 1059, 1090
MaeIII	GTNAC	4 cut(s)	3, 49, 444, 959
MalI	GATC	5 cut(s)	238, 583, 658, 865, 912
MboI	GATC	5 cut(s)	236, 581, 656, 863, 910
MboII	GAAGA	7 cut(s)	54, 57, 135, 330, 679, 807, 1042
MflI	RGATCY	3 cut(s)	236, 863, 910
MhlI	GDGCHC	5 cut(s)	616, 733, 763, 877, 1037
MlsI	TGGCCA	3 cut(s)	330, 646, 680
MluCI	AATT	5 cut(s)	104, 118, 199, 421, 790
MluNI	TGGCCA	3 cut(s)	330, 646, 680
MlyI	GAGTC	3 cut(s)	216, 251, 499
Mox20I	TGGCCA	3 cut(s)	330, 646, 680
MroXI	GAANNNNTTC	1 cut(s)	933
MscI	TGGCCA	3 cut(s)	330, 646, 680
MseI	TTAA	1 cut(s)	320
Msp20I	TGGCCA	3 cut(s)	330, 646, 680
MspA1I	CMGCKG	2 cut(s)	310, 840
MspI	CCGG	1 cut(s)	594
MspR9I	CCNGG	4 cut(s)	234, 726, 806, 879
MvaI	CCWGG	4 cut(s)	234, 726, 806, 879
MwoI	GCNNNNNNNGC	2 cut(s)	626, 1061
NcoI	CCATGG	1 cut(s)	1065
NdeII	GATC	5 cut(s)	236, 581, 656, 863, 910
NlaIII	CATG	6 cut(s)	127, 566, 872, 923, 997, 1069
NlaIV	GGNNCC	2 cut(s)	238, 534
NmuCI	GTSAC	3 cut(s)	3, 444, 959
NspI	RCATGY	1 cut(s)	997
PaqCI	CACCTGC	1 cut(s)	625
PceI	AGGCCT	1 cut(s)	559
PciI	ACATGT	1 cut(s)	993
PciSI	GCTCTTC	1 cut(s)	1025
PdmI	GAANNNNTTC	1 cut(s)	933
PfeI	GAWTC	2 cut(s)	263, 586
PflMI	CCANNNNNTGG	1 cut(s)	17
PfoI	TCCNGGA	1 cut(s)	232
PkrI	GCNGC	1 cut(s)	312
PleI	GAGTC	3 cut(s)	216, 251, 499
PpsI	GAGTC	3 cut(s)	216, 251, 499
PscI	ACATGT	1 cut(s)	993
Psp124BI	GAGCTC	2 cut(s)	877, 1037
Psp6I	CCWGG	4 cut(s)	232, 724, 804, 877
PspGI	CCWGG	4 cut(s)	232, 724, 804, 877
PspN4I	GGNNCC	2 cut(s)	238, 534
PspPI	GGNCC	1 cut(s)	1062
PstNI	CAGNNNCTG	1 cut(s)	176
PsuI	RGATCY	3 cut(s)	236, 863, 910
PvuII	CAGCTG	1 cut(s)	840
RsaI	GTAC	2 cut(s)	549, 604
RsaNI	GTAC	2 cut(s)	548, 603
SacI	GAGCTC	2 cut(s)	877, 1037
SapI	GCTCTTC	1 cut(s)	1025
SaqAI	TTAA	1 cut(s)	320
SatI	GCNGC	1 cut(s)	311
Sau3AI	GATC	5 cut(s)	236, 581, 656, 863, 910
Sau96I	GGNCC	1 cut(s)	1062
ScaI	AGTACT	1 cut(s)	604
SchI	GAGTC	3 cut(s)	216, 251, 499
ScrFI	CCNGG	4 cut(s)	234, 726, 806, 879
SduI	GDGCHC	5 cut(s)	616, 733, 763, 877, 1037
SfaNI	GCATC	4 cut(s)	322, 376, 957, 1030
SfcI	CTRYAG	1 cut(s)	168
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
Sse9I	AATT	5 cut(s)	104, 118, 199, 421, 790
SseBI	AGGCCT	1 cut(s)	559
SsiI	CCGC	2 cut(s)	8, 308
SspMI	CTAG	4 cut(s)	606, 1052, 1059, 1090
SstI	GAGCTC	2 cut(s)	877, 1037
StuI	AGGCCT	1 cut(s)	559
StyD4I	CCNGG	4 cut(s)	232, 724, 804, 877
StyI	CCWWGG	5 cut(s)	499, 624, 986, 1058, 1065
TaaI	ACNGT	1 cut(s)	98
TaqI	TCGA	3 cut(s)	266, 584, 719
TasI	AATT	5 cut(s)	104, 118, 199, 421, 790
TatI	WGTACW	2 cut(s)	547, 602
TfiI	GAWTC	2 cut(s)	263, 586
Tru1I	TTAA	1 cut(s)	320
Tru9I	TTAA	1 cut(s)	320
TscAI	CASTG	2 cut(s)	18, 703
TseFI	GTSAC	3 cut(s)	3, 444, 959
TseI	GCWGC	1 cut(s)	310
Tsp45I	GTSAC	3 cut(s)	3, 444, 959
TspDTI	ATGAA	3 cut(s)	330, 908, 1043
TspRI	CASTG	2 cut(s)	18, 703
Van91I	CCANNNNNTGG	1 cut(s)	17
VneI	GTGCAC	2 cut(s)	612, 759
XagI	CCTNNNNNAGG	1 cut(s)	1012
XapI	RAATTY	1 cut(s)	199
XceI	RCATGY	1 cut(s)	997
XmaJI	CCTAGG	1 cut(s)	1058
XmnI	GAANNNNTTC	1 cut(s)	933
XspI	CTAG	4 cut(s)	606, 1052, 1059, 1090
ZrmI	AGTACT	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.