Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004911

Physical Location & Seq

Genomic Coordinates Forward (+)

44179629 .. 44185073

Gene Structure 5445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G540700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGTCACCACCGCTGCTTGGTGTTGGGGAGGAGGAAGAGGGTCACAGTGATGTTACATTATTATCTTCCTCGGTTTCTATGGAGAGTGTATGCCACAATAGCTCGGAATTGAAGGAGCGAAATTACATGGGATTATCCGATTGCTCTTCGGTAGACAGTTCAAAAGTCTCTACTGTCTCTGGTGGAAGTAAAAATAGTCTGAATCTGAAGGCTACAGACCTTAGACTTGGGCTTCCTGGATCCCAGTCTCCTGAGAGAGACTCAGAACTGAGGCTAATCTCCACTCAACTTGATGAGAAACCCCTATTCCCGTTGCATCCTATAATGGATGGCAACTACTCTTCATTGCAGAAAACAGTTGTTTCAGGCAACAAGAGAGGTTTCTCTGATGCTATGGATGGGTTCTTGGAGGTAAAAACAACTTCTTTGTATGAAAGAGAATTGGATCTGTTTATTTATTTCAGGATCACGTCAGGCTTTACAACGGCCATATTTGTGATGCAGGGGAAATATGCTAATTCAGAGGTAAACTTGTTGCTGTCACCCAGGACTTCTCCAAACTTGGGATTGAAAACTGGTTCTGGACTTGAGAACCTTGCGACTCAACCAGCCAAAACAAAAGAGGTTGCATCAGCAAAGATGGTACAAGAGAGGCCCCATGCTGTCAATGAAACCAGACCGAATCATAATGGATCTGGAAATAGTACTAGCAGTGCACCTGCTACCAAGGCACAGGTTGTGGGTTGGCCACCTATAAGATCATTTAGGAGGCAAACTCTGGCCACTACATCAAAGAACACTGAGGAAGTAGAGGGAAAATCAGGGCCTGGTGCTTTGTTTGTCAAGGTCAGCTTGGATGGTGCTCCTTATTTGAGGAAAGTAGATTTGAAAAATTACTCTGCATACCAGGAACTTTCTTCTGCTCTGGAAAAGATGTTCAGTTGTTTTACCATAGGTCAATATGGATCTCATGGAGCTCCAGGCAGAGAGATTAGCGAAAGCAAGCTGAAAGATTTGCTTCATGGCTCAGAATATGTTCTAACTTACGAGGACAAAGATGGTGACTGGATGCTTGTGGGTGATGTCCCTTGGAACATGTTCATTGATACCTGCAAAAGGATGAGAATTATGAAGAGCTCAGACGCCATTGGCCTAGCTCCAAGGTCCATGGAGAAGTGCAGGAACAGGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

398

Amino Acids

43.43

Weight (kDa)

6.68

Isoelectric Point (pI)

45.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22670 AT2G22670 AT2G22670 AT2G22670 AT2G22670
fragaria_vesca	FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790
malus_domestica	MD08G1207300.v1.1 MD15G1391700.v1.1
prunus_persica	Prupe.1G540700_v2.0.a1
pyrus_communis	pycom08g17960 pycom15g35260
rosa_chinensis	RchiOBHm_Chr7g0233101
rosa_laevigata	RLG00000001299
rosa_multiflora	Rmu_co8377091.1_g000001 Rmu_sc0001362.1_g000019
rosa_roxburghii	Rroxscaffold_3G00227660
rosa_rugosa	Rorug07G0278100 Rorug07G0278200
rosa_samantha	Rh7AG433600 Rh7BG406400 Rh7CG452800 Rh7DG422000
rosa_wichuraiana	Rw7G035740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	727
Acc36I	ACCTGC	2 cut(s)	727, 1118
AccI	GTMKAC	1 cut(s)	153
AciI	CCGC	1 cut(s)	11
AclWI	GGATC	6 cut(s)	234, 247, 453, 473, 700, 973
AcoI	YGGCCR	3 cut(s)	486, 746, 780
AcuI	CTGAAG	1 cut(s)	227
AcyI	GRCGYC	1 cut(s)	1143
AfaI	GTAC	2 cut(s)	645, 706
AfiI	CCNNNNNNNGG	3 cut(s)	17, 563, 1116
AflIII	ACRYGT	1 cut(s)	1095
AgsI	TTSAA	4 cut(s)	112, 162, 571, 889
AjiI	CACGTC	1 cut(s)	471
AjnI	CCWGG	5 cut(s)	235, 545, 826, 906, 979
AloI	GAACNNNNNNTCC	2 cut(s)	920, 952
AluBI	AGCT	6 cut(s)	102, 852, 977, 1006, 1137, 1157
AluI	AGCT	6 cut(s)	102, 852, 977, 1006, 1137, 1157
Alw21I	GWGCWC	4 cut(s)	718, 865, 979, 1139
Alw26I	GTCTC	4 cut(s)	172, 181, 252, 252
Alw44I	GTGCAC	1 cut(s)	714
AlwI	GGATC	6 cut(s)	234, 247, 453, 473, 700, 973
AlwNI	CAGNNNCTG	1 cut(s)	827
AoxI	GGCC	6 cut(s)	486, 653, 746, 780, 824, 1150
ApaLI	GTGCAC	1 cut(s)	714
ApeKI	GCWGC	1 cut(s)	13
Asp700I	GAANNNNTTC	2 cut(s)	1035, 1097
AspS9I	GGNCC	3 cut(s)	654, 824, 1164
AsuHPI	GGTGA	3 cut(s)	534, 1073, 1091
AvaII	GGWCC	1 cut(s)	1164
BaeGI	GKGCMC	1 cut(s)	718
BalI	TGGCCA	2 cut(s)	748, 782
BamHI	GGATCC	1 cut(s)	239
BanII	GRGCYC	2 cut(s)	979, 1139
Bbv12I	GWGCWC	4 cut(s)	718, 865, 979, 1139
BccI	CCATC	5 cut(s)	323, 392, 634, 851, 1052
BceAI	ACGGC	1 cut(s)	501
BciT130I	CCWGG	5 cut(s)	237, 547, 828, 908, 981
BcoDI	GTCTC	4 cut(s)	172, 181, 252, 252
BfaI	CTAG	3 cut(s)	708, 1154, 1192
BfmI	CTRYAG	1 cut(s)	213
BfuAI	ACCTGC	2 cut(s)	727, 1118
BisI	GCNGC	1 cut(s)	14
BlsI	GCNGC	1 cut(s)	15
BmcAI	AGTACT	1 cut(s)	706
Bme1390I	CCNGG	5 cut(s)	237, 547, 828, 908, 981
Bme18I	GGWCC	1 cut(s)	1164
BmgBI	CACGTC	1 cut(s)	471
BmgT120I	GGNCC	3 cut(s)	654, 824, 1164
BmiI	GGNNCC	2 cut(s)	241, 656
BmrFI	CCNGG	5 cut(s)	237, 547, 828, 908, 981
BmrI	ACTGGG	1 cut(s)	238
BmsI	GCATC	5 cut(s)	325, 379, 489, 638, 1059
BmuI	ACTGGG	1 cut(s)	238
BplI	GAGNNNNNCTC	4 cut(s)	245, 277, 760, 792
BpmI	CTGGAG	1 cut(s)	963
BpuEI	CTTGAG	1 cut(s)	608
BsaHI	GRCGYC	1 cut(s)	1143
BsaJI	CCNNGG	6 cut(s)	69, 545, 726, 1088, 1160, 1167
Bsc4I	CCNNNNNNNGG	3 cut(s)	17, 563, 1116
Bse1I	ACTGG	3 cut(s)	244, 580, 1070
Bse3DI	GCAATG	1 cut(s)	344
BseBI	CCWGG	5 cut(s)	237, 547, 828, 908, 981
BseDI	CCNNGG	6 cut(s)	69, 545, 726, 1088, 1160, 1167
BseGI	GGATG	6 cut(s)	316, 334, 403, 862, 1074, 1125
BseLI	CCNNNNNNNGG	3 cut(s)	17, 563, 1116
BseMI	GCAATG	1 cut(s)	344
BseMII	CTCAG	6 cut(s)	243, 260, 276, 792, 1041, 1152
BseNI	ACTGG	3 cut(s)	244, 580, 1070
BseRI	GAGGAG	1 cut(s)	44
BseSI	GKGCMC	1 cut(s)	718
BshFI	GGCC	6 cut(s)	488, 655, 748, 782, 826, 1152
BsiHKAI	GWGCWC	4 cut(s)	718, 865, 979, 1139
BslFI	GGGAC	1 cut(s)	1070
BslI	CCNNNNNNNGG	3 cut(s)	17, 563, 1116
BsmAI	GTCTC	4 cut(s)	172, 181, 252, 252
BsmFI	GGGAC	1 cut(s)	1070
BsnI	GGCC	6 cut(s)	488, 655, 748, 782, 826, 1152
Bsp1286I	GDGCHC	4 cut(s)	718, 865, 979, 1139
Bsp143I	GATC	6 cut(s)	239, 445, 465, 692, 758, 965
Bsp19I	CCATGG	1 cut(s)	1167
BspACI	CCGC	1 cut(s)	11
BspANI	GGCC	6 cut(s)	488, 655, 748, 782, 826, 1152
BspCNI	CTCAG	6 cut(s)	244, 261, 275, 793, 1040, 1151
BspLI	GGNNCC	2 cut(s)	241, 656
BspMI	ACCTGC	2 cut(s)	727, 1118
BspPI	GGATC	6 cut(s)	234, 247, 453, 473, 700, 973
BspQI	GCTCTTC	2 cut(s)	151, 1127
BsrDI	GCAATG	1 cut(s)	344
BsrI	ACTGG	3 cut(s)	244, 580, 1070
BssECI	CCNNGG	6 cut(s)	69, 545, 726, 1088, 1160, 1167
BssMI	GATC	6 cut(s)	239, 445, 465, 692, 758, 965
BssNI	GRCGYC	1 cut(s)	1143
BssT1I	CCWWGG	4 cut(s)	726, 1088, 1160, 1167
Bst2UI	CCWGG	5 cut(s)	237, 547, 828, 908, 981
Bst4CI	ACNGT	4 cut(s)	47, 158, 175, 358
Bst6I	CTCTTC	4 cut(s)	30, 151, 346, 1127
BstACI	GRCGYC	1 cut(s)	1143
BstC8I	GCNNGC	1 cut(s)	1004
BstDEI	CTNAG	7 cut(s)	221, 252, 262, 269, 801, 1027, 1138
BstDSI	CCRYGG	1 cut(s)	1167
BstENI	CCTNNNNNAGG	1 cut(s)	1114
BstF5I	GGATG	6 cut(s)	316, 334, 403, 862, 1074, 1125
BstKTI	GATC	6 cut(s)	242, 448, 468, 695, 761, 968
BstMAI	GTCTC	4 cut(s)	172, 181, 252, 252
BstMBI	GATC	6 cut(s)	239, 445, 465, 692, 758, 965
BstMWI	GCNNNNNNNGC	2 cut(s)	99, 728
BstNI	CCWGG	5 cut(s)	237, 547, 828, 908, 981
BstNSI	RCATGY	1 cut(s)	1099
BstSCI	CCNGG	5 cut(s)	235, 545, 826, 906, 979
BstSFI	CTRYAG	1 cut(s)	213
BstSLI	GKGCMC	1 cut(s)	718
BstX2I	RGATCY	4 cut(s)	239, 445, 692, 965
BstYI	RGATCY	4 cut(s)	239, 445, 692, 965
BsuRI	GGCC	6 cut(s)	488, 655, 748, 782, 826, 1152
BtgI	CCRYGG	1 cut(s)	1167
BtrI	CACGTC	1 cut(s)	471
BtsCI	GGATG	6 cut(s)	316, 334, 403, 862, 1074, 1125
BtsI	GCAGTG	1 cut(s)	718
BtsIMutI	CAGTG	3 cut(s)	52, 718, 798
BveI	ACCTGC	2 cut(s)	727, 1118
Cac8I	GCNNGC	1 cut(s)	1004
CaiI	CAGNNNCTG	1 cut(s)	827
Cfr13I	GGNCC	3 cut(s)	654, 824, 1164
CseI	GACGC	1 cut(s)	1151
Csp6I	GTAC	2 cut(s)	644, 705
CspCI	CAANNNNNGTGG	2 cut(s)	271, 306
CviAII	CATG	6 cut(s)	127, 659, 971, 1022, 1096, 1168
CviQI	GTAC	2 cut(s)	644, 705
DdeI	CTNAG	7 cut(s)	221, 252, 262, 269, 801, 1027, 1138
DpnI	GATC	6 cut(s)	241, 447, 467, 694, 760, 967
DpnII	GATC	6 cut(s)	239, 445, 465, 692, 758, 965
EaeI	YGGCCR	3 cut(s)	486, 746, 780
Eam1104I	CTCTTC	4 cut(s)	30, 151, 346, 1127
EarI	CTCTTC	4 cut(s)	30, 151, 346, 1127
Ecl136II	GAGCTC	2 cut(s)	977, 1137
Eco130I	CCWWGG	4 cut(s)	726, 1088, 1160, 1167
Eco24I	GRGCYC	2 cut(s)	979, 1139
Eco47I	GGWCC	1 cut(s)	1164
Eco53kI	GAGCTC	2 cut(s)	977, 1137
Eco57I	CTGAAG	1 cut(s)	227
EcoICRI	GAGCTC	2 cut(s)	977, 1137
EcoNI	CCTNNNNNAGG	1 cut(s)	1114
EcoO109I	RGGNCCY	2 cut(s)	654, 824
EcoRII	CCWGG	5 cut(s)	235, 545, 826, 906, 979
EcoT14I	CCWWGG	4 cut(s)	726, 1088, 1160, 1167
EcoT38I	GRGCYC	2 cut(s)	979, 1139
ErhI	CCWWGG	4 cut(s)	726, 1088, 1160, 1167
FaeI	CATG	6 cut(s)	130, 662, 974, 1025, 1099, 1171
FalI	AAGNNNNNCTT	4 cut(s)	836, 868, 1002, 1034
FaqI	GGGAC	1 cut(s)	1070
FatI	CATG	6 cut(s)	126, 658, 970, 1021, 1095, 1167
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	1 cut(s)	14
FokI	GGATG	6 cut(s)	303, 341, 410, 869, 1081, 1132
FriOI	GRGCYC	2 cut(s)	979, 1139
Fsp4HI	GCNGC	1 cut(s)	14
FspBI	CTAG	3 cut(s)	708, 1154, 1192
GluI	GCNGC	1 cut(s)	14
GsuI	CTGGAG	1 cut(s)	963
HaeIII	GGCC	6 cut(s)	488, 655, 748, 782, 826, 1152
HgaI	GACGC	1 cut(s)	1151
Hin1I	GRCGYC	1 cut(s)	1143
Hin1II	CATG	6 cut(s)	130, 662, 974, 1025, 1099, 1171
HinfI	GANTC	4 cut(s)	202, 260, 601, 682
HphI	GGTGA	3 cut(s)	534, 1073, 1091
Hpy166II	GTNNAC	3 cut(s)	154, 529, 716
Hpy188I	TCNGA	9 cut(s)	106, 139, 201, 207, 265, 388, 523, 1030, 1141
Hpy188III	TCNNGA	5 cut(s)	251, 463, 582, 696, 926
Hpy8I	GTNNAC	3 cut(s)	154, 529, 716
HpyAV	CCTTC	2 cut(s)	106, 202
HpyCH4III	ACNGT	4 cut(s)	47, 158, 175, 358
HpyCH4IV	ACGT	1 cut(s)	470
HpyCH4V	TGCA	8 cut(s)	316, 349, 502, 629, 716, 902, 1113, 1179
HpyF10VI	GCNNNNNNNGC	2 cut(s)	99, 728
HpyF3I	CTNAG	7 cut(s)	221, 252, 262, 269, 801, 1027, 1138
HpySE526I	ACGT	1 cut(s)	470
Hsp92I	GRCGYC	1 cut(s)	1143
Hsp92II	CATG	6 cut(s)	130, 662, 974, 1025, 1099, 1171
Kzo9I	GATC	6 cut(s)	239, 445, 465, 692, 758, 965
LguI	GCTCTTC	2 cut(s)	151, 1127
LmnI	GCTCC	5 cut(s)	115, 868, 974, 982, 1162
LweI	GCATC	5 cut(s)	325, 379, 489, 638, 1059
MaeI	CTAG	3 cut(s)	708, 1154, 1192
MaeII	ACGT	1 cut(s)	470
MaeIII	GTNAC	5 cut(s)	3, 41, 52, 540, 1061
MalI	GATC	6 cut(s)	241, 447, 467, 694, 760, 967
MboI	GATC	6 cut(s)	239, 445, 465, 692, 758, 965
MboII	GAAGA	6 cut(s)	47, 57, 138, 333, 909, 1144
MflI	RGATCY	4 cut(s)	239, 445, 692, 965
MhlI	GDGCHC	4 cut(s)	718, 865, 979, 1139
MlsI	TGGCCA	2 cut(s)	748, 782
MluCI	AATT	6 cut(s)	107, 121, 440, 517, 892, 1125
MluNI	TGGCCA	2 cut(s)	748, 782
MlyI	GAGTC	2 cut(s)	254, 595
Mox20I	TGGCCA	2 cut(s)	748, 782
MroXI	GAANNNNTTC	2 cut(s)	1035, 1097
MscI	TGGCCA	2 cut(s)	748, 782
MslI	CAYNNNNRTG	2 cut(s)	48, 494
Msp20I	TGGCCA	2 cut(s)	748, 782
MspA1I	CMGCKG	1 cut(s)	13
MspR9I	CCNGG	5 cut(s)	237, 547, 828, 908, 981
MvaI	CCWGG	5 cut(s)	237, 547, 828, 908, 981
MwoI	GCNNNNNNNGC	2 cut(s)	99, 728
NcoI	CCATGG	1 cut(s)	1167
NdeII	GATC	6 cut(s)	239, 445, 465, 692, 758, 965
NlaIII	CATG	6 cut(s)	130, 662, 974, 1025, 1099, 1171
NlaIV	GGNNCC	2 cut(s)	241, 656
NmuCI	GTSAC	4 cut(s)	3, 41, 540, 1061
NspI	RCATGY	1 cut(s)	1099
PaqCI	CACCTGC	1 cut(s)	727
PciI	ACATGT	1 cut(s)	1095
PciSI	GCTCTTC	2 cut(s)	151, 1127
PdmI	GAANNNNTTC	2 cut(s)	1035, 1097
PfeI	GAWTC	2 cut(s)	202, 682
PfoI	TCCNGGA	1 cut(s)	235
PkrI	GCNGC	1 cut(s)	15
PleI	GAGTC	2 cut(s)	254, 595
PpsI	GAGTC	2 cut(s)	254, 595
PscI	ACATGT	1 cut(s)	1095
Psp124BI	GAGCTC	2 cut(s)	979, 1139
Psp6I	CCWGG	5 cut(s)	235, 545, 826, 906, 979
PspGI	CCWGG	5 cut(s)	235, 545, 826, 906, 979
PspN4I	GGNNCC	2 cut(s)	241, 656
PspPI	GGNCC	3 cut(s)	654, 824, 1164
PstNI	CAGNNNCTG	1 cut(s)	827
PsuI	RGATCY	4 cut(s)	239, 445, 692, 965
RsaI	GTAC	2 cut(s)	645, 706
RsaNI	GTAC	2 cut(s)	644, 705
RseI	CAYNNNNRTG	2 cut(s)	48, 494
SacI	GAGCTC	2 cut(s)	979, 1139
SapI	GCTCTTC	2 cut(s)	151, 1127
SatI	GCNGC	1 cut(s)	14
Sau3AI	GATC	6 cut(s)	239, 445, 465, 692, 758, 965
Sau96I	GGNCC	3 cut(s)	654, 824, 1164
ScaI	AGTACT	1 cut(s)	706
SchI	GAGTC	2 cut(s)	254, 595
ScrFI	CCNGG	5 cut(s)	237, 547, 828, 908, 981
SduI	GDGCHC	4 cut(s)	718, 865, 979, 1139
SfaNI	GCATC	5 cut(s)	325, 379, 489, 638, 1059
SfcI	CTRYAG	1 cut(s)	213
SinI	GGWCC	1 cut(s)	1164
SmiMI	CAYNNNNRTG	2 cut(s)	48, 494
SmlI	CTYRAG	1 cut(s)	587
SmoI	CTYRAG	1 cut(s)	587
Sse9I	AATT	6 cut(s)	107, 121, 440, 517, 892, 1125
SsiI	CCGC	1 cut(s)	11
SspMI	CTAG	3 cut(s)	708, 1154, 1192
SstI	GAGCTC	2 cut(s)	979, 1139
StyD4I	CCNGG	5 cut(s)	235, 545, 826, 906, 979
StyI	CCWWGG	4 cut(s)	726, 1088, 1160, 1167
TaaI	ACNGT	4 cut(s)	47, 158, 175, 358
TaiI	ACGT	1 cut(s)	473
TaqII	GACCGA	1 cut(s)	694
TasI	AATT	6 cut(s)	107, 121, 440, 517, 892, 1125
TatI	WGTACW	1 cut(s)	704
TfiI	GAWTC	2 cut(s)	202, 682
TscAI	CASTG	3 cut(s)	52, 718, 805
TseFI	GTSAC	4 cut(s)	3, 41, 540, 1061
TseI	GCWGC	1 cut(s)	13
Tsp45I	GTSAC	4 cut(s)	3, 41, 540, 1061
TspDTI	ATGAA	6 cut(s)	333, 447, 684, 1010, 1090, 1145
TspRI	CASTG	3 cut(s)	52, 718, 805
VneI	GTGCAC	1 cut(s)	714
VpaK11BI	GGWCC	1 cut(s)	1164
XagI	CCTNNNNNAGG	1 cut(s)	1114
XceI	RCATGY	1 cut(s)	1099
XmiI	GTMKAC	1 cut(s)	153
XmnI	GAANNNNTTC	2 cut(s)	1035, 1097
XspI	CTAG	3 cut(s)	708, 1154, 1192
ZrmI	AGTACT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.