Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004911

Physical Location & Seq

Genomic Coordinates Reverse (-)

45507124 .. 45507826

Gene Structure 703 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG406400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGTCACAACCACTTCTCGGTGCTGGGGAGGAGGAAGGTAGGAGTGATGTTACAGCATTATCTTCCTCACTTTCAATGGAGAGTGTATGTCCTAACAGCTCAGATTTGAAGGAGCGAAATTACATGGGATTATCTGATTGCTCTTCGGTAGACAGTTCAAAAGTCTCCCATGTAGATGGAAGTAAAAGTAGACTGAACCTGAAGGCTACGGAACTTAGGCTTGGGCTTCCTGGATCCCAGTCTCCTGACAGAGACTCAAAACTGAGGCTAGTCTCCACTGAACTTGATGAGAAGCCCCTTTTCCCATTACATCCTTTAAAGGATTCATTGCAGAAAACAGTTGTTTCAGGCAACAAGAGAGGGTTCTCTGATGCTATGGATGAGTTCTCAGAGGGCAAATATGCTAATACAGAGGTAAACATGTTGCTGTCGCCCAGGCCTTCTCCAAACTTGGGATTGAAAACTGGTTCTGTACTTGAGAACCTTGGGACTCAGGAGCCCAAAATGAAAGAGATAGCACCACCAAAGATAATGCAAGAGAGGCCTCATGCTGCCAAAGAAACTAGGCCAAATCATTCTAGTACTAACAGTGCACCTGCTACCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

202

Amino Acids

21.84

Weight (kDa)

6.44

Isoelectric Point (pI)

58.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22670 AT2G22670 AT2G22670 AT2G22670 AT2G22670
fragaria_vesca	FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790
malus_domestica	MD08G1207300.v1.1 MD15G1391700.v1.1
prunus_persica	Prupe.1G540700_v2.0.a1
pyrus_communis	pycom08g17960 pycom15g35260
rosa_chinensis	RchiOBHm_Chr7g0233101
rosa_laevigata	RLG00000001299
rosa_multiflora	Rmu_co8377091.1_g000001 Rmu_sc0001362.1_g000019
rosa_roxburghii	Rroxscaffold_3G00227660
rosa_rugosa	Rorug07G0278100 Rorug07G0278200
rosa_samantha	Rh7AG433600 Rh7BG406400 Rh7CG452800 Rh7DG422000
rosa_wichuraiana	Rw7G035740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	604
Acc36I	ACCTGC	1 cut(s)	604
AccI	GTMKAC	2 cut(s)	150, 190
AclWI	GGATC	2 cut(s)	228, 241
AcuI	CTGAAG	1 cut(s)	221
AfaI	GTAC	2 cut(s)	474, 583
AfiI	CCNNNNNNNGG	2 cut(s)	17, 452
AflIII	ACRYGT	1 cut(s)	420
AgsI	TTSAA	4 cut(s)	75, 109, 159, 460
AjnI	CCWGG	2 cut(s)	229, 434
AjuI	GAANNNNNNNTTGG	2 cut(s)	204, 236
AluBI	AGCT	1 cut(s)	99
AluI	AGCT	1 cut(s)	99
Alw21I	GWGCWC	1 cut(s)	595
Alw26I	GTCTC	4 cut(s)	169, 246, 246, 277
Alw44I	GTGCAC	1 cut(s)	591
AlwI	GGATC	2 cut(s)	228, 241
AoxI	GGCC	3 cut(s)	437, 542, 566
ApaLI	GTGCAC	1 cut(s)	591
ApeKI	GCWGC	1 cut(s)	551
BaeGI	GKGCMC	1 cut(s)	595
BamHI	GGATCC	1 cut(s)	233
BanII	GRGCYC	1 cut(s)	501
Bbv12I	GWGCWC	1 cut(s)	595
BbvI	GCAGC	1 cut(s)	538
BccI	CCATC	1 cut(s)	170
BciT130I	CCWGG	2 cut(s)	231, 436
BcoDI	GTCTC	4 cut(s)	169, 246, 246, 277
BfaI	CTAG	3 cut(s)	269, 564, 579
BfuAI	ACCTGC	1 cut(s)	604
BisI	GCNGC	1 cut(s)	552
BlsI	GCNGC	1 cut(s)	553
BmcAI	AGTACT	1 cut(s)	583
Bme1390I	CCNGG	2 cut(s)	231, 436
BmiI	GGNNCC	2 cut(s)	235, 498
BmrFI	CCNGG	2 cut(s)	231, 436
BmrI	ACTGGG	1 cut(s)	232
BmsI	GCATC	1 cut(s)	361
BmuI	ACTGGG	1 cut(s)	232
BpuEI	CTTGAG	1 cut(s)	497
BsaJI	CCNNGG	2 cut(s)	434, 484
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 452
Bse1I	ACTGG	2 cut(s)	238, 469
Bse3DI	GCAATG	1 cut(s)	326
BseBI	CCWGG	2 cut(s)	231, 436
BseDI	CCNNGG	2 cut(s)	434, 484
BseGI	GGATG	2 cut(s)	310, 385
BseLI	CCNNNNNNNGG	2 cut(s)	17, 452
BseMI	GCAATG	1 cut(s)	326
BseMII	CTCAG	4 cut(s)	114, 254, 402, 506
BseNI	ACTGG	2 cut(s)	238, 469
BseRI	GAGGAG	1 cut(s)	44
BseSI	GKGCMC	1 cut(s)	595
BseXI	GCAGC	1 cut(s)	538
BseYI	CCCAGC	1 cut(s)	23
BshFI	GGCC	3 cut(s)	439, 544, 568
BsiHKAI	GWGCWC	1 cut(s)	595
BslFI	GGGAC	1 cut(s)	502
BslI	CCNNNNNNNGG	2 cut(s)	17, 452
BsmAI	GTCTC	4 cut(s)	169, 246, 246, 277
BsmFI	GGGAC	1 cut(s)	502
BsnI	GGCC	3 cut(s)	439, 544, 568
Bsp1286I	GDGCHC	2 cut(s)	501, 595
Bsp143I	GATC	1 cut(s)	233
BspANI	GGCC	3 cut(s)	439, 544, 568
BspCNI	CTCAG	4 cut(s)	113, 255, 401, 505
BspLI	GGNNCC	2 cut(s)	235, 498
BspMI	ACCTGC	1 cut(s)	604
BspPI	GGATC	2 cut(s)	228, 241
BspQI	GCTCTTC	1 cut(s)	148
BsrDI	GCAATG	1 cut(s)	326
BsrI	ACTGG	2 cut(s)	238, 469
BssECI	CCNNGG	2 cut(s)	434, 484
BssMI	GATC	1 cut(s)	233
BssT1I	CCWWGG	1 cut(s)	484
Bst2UI	CCWGG	2 cut(s)	231, 436
Bst4CI	ACNGT	3 cut(s)	155, 340, 590
Bst6I	CTCTTC	1 cut(s)	148
BstDEI	CTNAG	5 cut(s)	100, 215, 263, 388, 492
BstF5I	GGATG	2 cut(s)	310, 385
BstKTI	GATC	1 cut(s)	236
BstMAI	GTCTC	4 cut(s)	169, 246, 246, 277
BstMBI	GATC	1 cut(s)	233
BstMWI	GCNNNNNNNGC	1 cut(s)	541
BstNI	CCWGG	2 cut(s)	231, 436
BstNSI	RCATGY	1 cut(s)	424
BstSCI	CCNGG	2 cut(s)	229, 434
BstSLI	GKGCMC	1 cut(s)	595
BstV1I	GCAGC	1 cut(s)	538
BstX2I	RGATCY	1 cut(s)	233
BstXI	CCANNNNNNTGG	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	233
BsuRI	GGCC	3 cut(s)	439, 544, 568
BtsCI	GGATG	2 cut(s)	310, 385
BtsIMutI	CAGTG	2 cut(s)	276, 595
BveI	ACCTGC	1 cut(s)	604
Csp6I	GTAC	2 cut(s)	473, 582
CspCI	CAANNNNNGTGG	2 cut(s)	265, 300
CviAII	CATG	4 cut(s)	124, 170, 421, 548
CviQI	GTAC	2 cut(s)	473, 582
DdeI	CTNAG	5 cut(s)	100, 215, 263, 388, 492
DpnI	GATC	1 cut(s)	235
DpnII	GATC	1 cut(s)	233
DraI	TTTAAA	1 cut(s)	318
Eam1104I	CTCTTC	1 cut(s)	148
EarI	CTCTTC	1 cut(s)	148
Eco130I	CCWWGG	1 cut(s)	484
Eco147I	AGGCCT	2 cut(s)	439, 544
Eco24I	GRGCYC	1 cut(s)	501
Eco57I	CTGAAG	1 cut(s)	221
EcoRII	CCWGG	2 cut(s)	229, 434
EcoT14I	CCWWGG	1 cut(s)	484
EcoT38I	GRGCYC	1 cut(s)	501
ErhI	CCWWGG	1 cut(s)	484
FaeI	CATG	4 cut(s)	127, 173, 424, 551
FaiI	YATR	7 cut(s)	88, 125, 171, 377, 402, 422, 549
FaqI	GGGAC	1 cut(s)	502
FatI	CATG	4 cut(s)	123, 169, 420, 547
FblI	GTMKAC	2 cut(s)	150, 190
Fnu4HI	GCNGC	1 cut(s)	552
FokI	GGATG	2 cut(s)	297, 392
FriOI	GRGCYC	1 cut(s)	501
Fsp4HI	GCNGC	1 cut(s)	552
FspBI	CTAG	3 cut(s)	269, 564, 579
GluI	GCNGC	1 cut(s)	552
GsaI	CCCAGC	1 cut(s)	27
HaeIII	GGCC	3 cut(s)	439, 544, 568
Hin1II	CATG	4 cut(s)	127, 173, 424, 551
HinfI	GANTC	3 cut(s)	254, 323, 490
Hpy166II	GTNNAC	4 cut(s)	151, 191, 418, 593
Hpy188I	TCNGA	4 cut(s)	103, 136, 370, 391
Hpy188III	TCNNGA	2 cut(s)	245, 494
Hpy8I	GTNNAC	4 cut(s)	151, 191, 418, 593
HpyAV	CCTTC	4 cut(s)	29, 103, 196, 450
HpyCH4III	ACNGT	3 cut(s)	155, 340, 590
HpyCH4V	TGCA	3 cut(s)	331, 535, 593
HpyF10VI	GCNNNNNNNGC	1 cut(s)	541
HpyF3I	CTNAG	5 cut(s)	100, 215, 263, 388, 492
Hsp92II	CATG	4 cut(s)	127, 173, 424, 551
Kzo9I	GATC	1 cut(s)	233
LguI	GCTCTTC	1 cut(s)	148
LmnI	GCTCC	2 cut(s)	112, 496
Lsp1109I	GCAGC	1 cut(s)	538
LweI	GCATC	1 cut(s)	361
MaeI	CTAG	3 cut(s)	269, 564, 579
MaeIII	GTNAC	2 cut(s)	3, 49
MalI	GATC	1 cut(s)	235
MboI	GATC	1 cut(s)	233
MboII	GAAGA	2 cut(s)	54, 135
MflI	RGATCY	1 cut(s)	233
MhlI	GDGCHC	2 cut(s)	501, 595
MluCI	AATT	1 cut(s)	118
MlyI	GAGTC	2 cut(s)	248, 484
MnlI	CCTC	9 cut(s)	22, 25, 76, 258, 353, 385, 406, 534, 555
MseI	TTAA	1 cut(s)	317
MslI	CAYNNNNRTG	1 cut(s)	174
MspR9I	CCNGG	2 cut(s)	231, 436
MvaI	CCWGG	2 cut(s)	231, 436
MwoI	GCNNNNNNNGC	1 cut(s)	541
NdeII	GATC	1 cut(s)	233
NlaIII	CATG	4 cut(s)	127, 173, 424, 551
NlaIV	GGNNCC	2 cut(s)	235, 498
NmuCI	GTSAC	1 cut(s)	3
NspI	RCATGY	1 cut(s)	424
PaqCI	CACCTGC	1 cut(s)	604
PceI	AGGCCT	2 cut(s)	439, 544
PciI	ACATGT	1 cut(s)	420
PciSI	GCTCTTC	1 cut(s)	148
PfeI	GAWTC	1 cut(s)	323
PfoI	TCCNGGA	1 cut(s)	229
PkrI	GCNGC	1 cut(s)	553
PleI	GAGTC	2 cut(s)	248, 484
PpsI	GAGTC	2 cut(s)	248, 484
PscI	ACATGT	1 cut(s)	420
Psp6I	CCWGG	2 cut(s)	229, 434
PspFI	CCCAGC	1 cut(s)	23
PspGI	CCWGG	2 cut(s)	229, 434
PspN4I	GGNNCC	2 cut(s)	235, 498
PsuI	RGATCY	1 cut(s)	233
RsaI	GTAC	2 cut(s)	474, 583
RsaNI	GTAC	2 cut(s)	473, 582
RseI	CAYNNNNRTG	1 cut(s)	174
SapI	GCTCTTC	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	317
SatI	GCNGC	1 cut(s)	552
Sau3AI	GATC	1 cut(s)	233
ScaI	AGTACT	1 cut(s)	583
SchI	GAGTC	2 cut(s)	248, 484
ScrFI	CCNGG	2 cut(s)	231, 436
SduI	GDGCHC	2 cut(s)	501, 595
SetI	ASST	6 cut(s)	40, 101, 201, 417, 486, 598
SfaNI	GCATC	1 cut(s)	361
SmiMI	CAYNNNNRTG	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	1 cut(s)	118
SseBI	AGGCCT	2 cut(s)	439, 544
SspMI	CTAG	3 cut(s)	269, 564, 579
StuI	AGGCCT	2 cut(s)	439, 544
StyD4I	CCNGG	2 cut(s)	229, 434
StyI	CCWWGG	1 cut(s)	484
TaaI	ACNGT	3 cut(s)	155, 340, 590
TasI	AATT	1 cut(s)	118
TatI	WGTACW	2 cut(s)	472, 581
TfiI	GAWTC	1 cut(s)	323
Tru1I	TTAA	1 cut(s)	317
Tru9I	TTAA	1 cut(s)	317
TscAI	CASTG	2 cut(s)	283, 595
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	1 cut(s)	551
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	2 cut(s)	315, 521
TspGWI	ACGGA	1 cut(s)	224
TspRI	CASTG	2 cut(s)	283, 595
VneI	GTGCAC	1 cut(s)	591
XceI	RCATGY	1 cut(s)	424
XmiI	GTMKAC	2 cut(s)	150, 190
XspI	CTAG	3 cut(s)	269, 564, 579
ZrmI	AGTACT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.