Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8377091.1

Orthogroup ID

OG0004911

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1018

Gene Structure 1018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8377091.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 551 bp

atgttgctgtcacccaggccttctccaaacttgggattgaaaactggttctgtacttgagaaccttgggagtcaggagcccaaaatgaaagagatagcaccaccaaagataatgcaagagaggcctcatgctgccaaagaaactaggccaaatcattctagtactaacagtgcacctgctaccaaggcgcaggttgttggttggccacctataagatcatttaggaagaactcattggccactgtctcaaagaacgtggaggaagtagatggaaaagcagggcctggtgctctatatgtcaaagtcagcatggatggtgctccttatttgaggaaagtagatttgaaacattactctgcataccaggaactttcttctgctcttgaaaagatgtttagctgttttactataggtcaatatggatctcatggagctctgggcagagagattagtgaaagcaagctgaaggatctccttcatggctcagaatatgtcctcacctacgaggacaaagatggtgactggatgcttgtgggtgatgtcccttggga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

183

Amino Acids

20.1

Weight (kDa)

8.55

Isoelectric Point (pI)

41.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22670 AT2G22670 AT2G22670 AT2G22670 AT2G22670
fragaria_vesca	FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790
malus_domestica	MD08G1207300.v1.1 MD15G1391700.v1.1
prunus_persica	Prupe.1G540700_v2.0.a1
pyrus_communis	pycom08g17960 pycom15g35260
rosa_chinensis	RchiOBHm_Chr7g0233101
rosa_laevigata	RLG00000001299
rosa_multiflora	Rmu_co8377091.1_g000001 Rmu_sc0001362.1_g000019
rosa_roxburghii	Rroxscaffold_3G00227660
rosa_rugosa	Rorug07G0278100 Rorug07G0278200
rosa_samantha	Rh7AG433600 Rh7BG406400 Rh7CG452800 Rh7DG422000
rosa_wichuraiana	Rw7G035740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	184
Acc36I	ACCTGC	2 cut(s)	181, 184
AclWI	GGATC	2 cut(s)	430, 477
AcoI	YGGCCR	2 cut(s)	203, 237
AcuI	CTGAAG	1 cut(s)	485
AfaI	GTAC	2 cut(s)	54, 163
AfiI	CCNNNNNNNGG	1 cut(s)	32
AgsI	TTSAA	3 cut(s)	40, 346, 386
AjnI	CCWGG	3 cut(s)	14, 283, 363
AjuI	GAANNNNNNNTTGG	2 cut(s)	218, 250
AluBI	AGCT	3 cut(s)	399, 434, 463
AluI	AGCT	3 cut(s)	399, 434, 463
Alw21I	GWGCWC	4 cut(s)	175, 292, 322, 436
Alw26I	GTCTC	1 cut(s)	250
Alw44I	GTGCAC	1 cut(s)	171
AlwI	GGATC	2 cut(s)	430, 477
AlwNI	CAGNNNCTG	1 cut(s)	284
AoxI	GGCC	6 cut(s)	17, 122, 146, 203, 237, 281
ApaLI	GTGCAC	1 cut(s)	171
ApeKI	GCWGC	1 cut(s)	131
AspLEI	GCGC	1 cut(s)	190
AspS9I	GGNCC	1 cut(s)	281
AsuHPI	GGTGA	4 cut(s)	3, 490, 530, 548
BaeGI	GKGCMC	1 cut(s)	175
BalI	TGGCCA	2 cut(s)	205, 239
BanII	GRGCYC	2 cut(s)	81, 436
Bbv12I	GWGCWC	4 cut(s)	175, 292, 322, 436
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	3 cut(s)	263, 308, 509
BciT130I	CCWGG	3 cut(s)	16, 285, 365
BcoDI	GTCTC	1 cut(s)	250
BfaI	CTAG	2 cut(s)	144, 159
BfmI	CTRYAG	1 cut(s)	408
BfuAI	ACCTGC	2 cut(s)	181, 184
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
BmcAI	AGTACT	1 cut(s)	163
Bme1390I	CCNGG	3 cut(s)	16, 285, 365
BmgT120I	GGNCC	1 cut(s)	281
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	3 cut(s)	16, 285, 365
BmsI	GCATC	1 cut(s)	516
BpuEI	CTTGAG	1 cut(s)	77
BsaJI	CCNNGG	4 cut(s)	14, 64, 183, 545
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
Bse1I	ACTGG	2 cut(s)	49, 527
BseBI	CCWGG	3 cut(s)	16, 285, 365
BseDI	CCNNGG	4 cut(s)	14, 64, 183, 545
BseGI	GGATG	2 cut(s)	319, 531
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseMII	CTCAG	1 cut(s)	498
BseNI	ACTGG	2 cut(s)	49, 527
BseSI	GKGCMC	1 cut(s)	175
BseXI	GCAGC	1 cut(s)	118
BshFI	GGCC	6 cut(s)	19, 124, 148, 205, 239, 283
BsiHKAI	GWGCWC	4 cut(s)	175, 292, 322, 436
BslFI	GGGAC	1 cut(s)	527
BslI	CCNNNNNNNGG	1 cut(s)	32
BsmAI	GTCTC	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	527
BsnI	GGCC	6 cut(s)	19, 124, 148, 205, 239, 283
Bsp1286I	GDGCHC	5 cut(s)	81, 175, 292, 322, 436
Bsp143I	GATC	3 cut(s)	215, 422, 469
BspANI	GGCC	6 cut(s)	19, 124, 148, 205, 239, 283
BspCNI	CTCAG	1 cut(s)	497
BspLI	GGNNCC	1 cut(s)	78
BspMI	ACCTGC	2 cut(s)	181, 184
BspPI	GGATC	2 cut(s)	430, 477
BsrI	ACTGG	2 cut(s)	49, 527
BssECI	CCNNGG	4 cut(s)	14, 64, 183, 545
BssMI	GATC	3 cut(s)	215, 422, 469
BssT1I	CCWWGG	3 cut(s)	64, 183, 545
Bst2UI	CCWGG	3 cut(s)	16, 285, 365
Bst4CI	ACNGT	2 cut(s)	170, 244
BstC8I	GCNNGC	1 cut(s)	461
BstDEI	CTNAG	1 cut(s)	484
BstF5I	GGATG	2 cut(s)	319, 531
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	3 cut(s)	218, 425, 472
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	3 cut(s)	215, 422, 469
BstMWI	GCNNNNNNNGC	2 cut(s)	121, 185
BstNI	CCWGG	3 cut(s)	16, 285, 365
BstSCI	CCNGG	3 cut(s)	14, 283, 363
BstSFI	CTRYAG	1 cut(s)	408
BstSLI	GKGCMC	1 cut(s)	175
BstV1I	GCAGC	1 cut(s)	118
BstX2I	RGATCY	2 cut(s)	422, 469
BstYI	RGATCY	2 cut(s)	422, 469
BsuRI	GGCC	6 cut(s)	19, 124, 148, 205, 239, 283
BtsCI	GGATG	2 cut(s)	319, 531
BtsIMutI	CAGTG	2 cut(s)	175, 240
BveI	ACCTGC	2 cut(s)	181, 184
Cac8I	GCNNGC	1 cut(s)	461
CaiI	CAGNNNCTG	1 cut(s)	284
CfoI	GCGC	1 cut(s)	190
Cfr13I	GGNCC	1 cut(s)	281
Csp6I	GTAC	2 cut(s)	53, 162
CspCI	CAANNNNNGTGG	2 cut(s)	237, 272
CviAII	CATG	4 cut(s)	128, 310, 428, 479
CviQI	GTAC	2 cut(s)	53, 162
DdeI	CTNAG	1 cut(s)	484
DpnI	GATC	3 cut(s)	217, 424, 471
DpnII	GATC	3 cut(s)	215, 422, 469
EaeI	YGGCCR	2 cut(s)	203, 237
Ecl136II	GAGCTC	1 cut(s)	434
Eco130I	CCWWGG	3 cut(s)	64, 183, 545
Eco147I	AGGCCT	2 cut(s)	19, 124
Eco24I	GRGCYC	2 cut(s)	81, 436
Eco53kI	GAGCTC	1 cut(s)	434
Eco57I	CTGAAG	1 cut(s)	485
EcoICRI	GAGCTC	1 cut(s)	434
EcoO109I	RGGNCCY	1 cut(s)	281
EcoRII	CCWGG	3 cut(s)	14, 283, 363
EcoT14I	CCWWGG	3 cut(s)	64, 183, 545
EcoT38I	GRGCYC	2 cut(s)	81, 436
ErhI	CCWWGG	3 cut(s)	64, 183, 545
FaeI	CATG	4 cut(s)	131, 313, 431, 482
FaqI	GGGAC	1 cut(s)	527
FatI	CATG	4 cut(s)	127, 309, 427, 478
Fnu4HI	GCNGC	1 cut(s)	132
FokI	GGATG	2 cut(s)	326, 538
FriOI	GRGCYC	2 cut(s)	81, 436
Fsp4HI	GCNGC	1 cut(s)	132
FspBI	CTAG	2 cut(s)	144, 159
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	1 cut(s)	132
HaeIII	GGCC	6 cut(s)	19, 124, 148, 205, 239, 283
HhaI	GCGC	1 cut(s)	190
Hin1II	CATG	4 cut(s)	131, 313, 431, 482
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HinfI	GANTC	1 cut(s)	70
HphI	GGTGA	4 cut(s)	3, 490, 530, 548
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188I	TCNGA	1 cut(s)	487
Hpy188III	TCNNGA	2 cut(s)	74, 383
Hpy8I	GTNNAC	1 cut(s)	173
HpyAV	CCTTC	3 cut(s)	30, 460, 485
HpyCH4III	ACNGT	2 cut(s)	170, 244
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	3 cut(s)	115, 173, 359
HpyF10VI	GCNNNNNNNGC	2 cut(s)	121, 185
HpyF3I	CTNAG	1 cut(s)	484
HpySE526I	ACGT	1 cut(s)	255
Hsp92II	CATG	4 cut(s)	131, 313, 431, 482
HspAI	GCGC	1 cut(s)	188
Kzo9I	GATC	3 cut(s)	215, 422, 469
LmnI	GCTCC	3 cut(s)	76, 325, 431
Lsp1109I	GCAGC	1 cut(s)	118
LweI	GCATC	1 cut(s)	516
MaeI	CTAG	2 cut(s)	144, 159
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	2 cut(s)	9, 518
MalI	GATC	3 cut(s)	217, 424, 471
MboI	GATC	3 cut(s)	215, 422, 469
MboII	GAAGA	2 cut(s)	238, 366
MflI	RGATCY	2 cut(s)	422, 469
MhlI	GDGCHC	5 cut(s)	81, 175, 292, 322, 436
MlsI	TGGCCA	2 cut(s)	205, 239
MluNI	TGGCCA	2 cut(s)	205, 239
MlyI	GAGTC	1 cut(s)	79
MnlI	CCTC	6 cut(s)	114, 135, 253, 324, 499, 506
Mox20I	TGGCCA	2 cut(s)	205, 239
MscI	TGGCCA	2 cut(s)	205, 239
Msp20I	TGGCCA	2 cut(s)	205, 239
MspR9I	CCNGG	3 cut(s)	16, 285, 365
MvaI	CCWGG	3 cut(s)	16, 285, 365
MwoI	GCNNNNNNNGC	2 cut(s)	121, 185
NdeII	GATC	3 cut(s)	215, 422, 469
NlaIII	CATG	4 cut(s)	131, 313, 431, 482
NlaIV	GGNNCC	1 cut(s)	78
NmuCI	GTSAC	2 cut(s)	9, 518
PaqCI	CACCTGC	1 cut(s)	184
PceI	AGGCCT	2 cut(s)	19, 124
PkrI	GCNGC	1 cut(s)	133
PleI	GAGTC	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	78
Psp124BI	GAGCTC	1 cut(s)	436
Psp6I	CCWGG	3 cut(s)	14, 283, 363
PspGI	CCWGG	3 cut(s)	14, 283, 363
PspN4I	GGNNCC	1 cut(s)	78
PspPI	GGNCC	1 cut(s)	281
PstNI	CAGNNNCTG	1 cut(s)	284
PsuI	RGATCY	2 cut(s)	422, 469
RsaI	GTAC	2 cut(s)	54, 163
RsaNI	GTAC	2 cut(s)	53, 162
SacI	GAGCTC	1 cut(s)	436
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	3 cut(s)	215, 422, 469
Sau96I	GGNCC	1 cut(s)	281
ScaI	AGTACT	1 cut(s)	163
SchI	GAGTC	1 cut(s)	79
ScrFI	CCNGG	3 cut(s)	16, 285, 365
SduI	GDGCHC	5 cut(s)	81, 175, 292, 322, 436
SfaNI	GCATC	1 cut(s)	516
SfcI	CTRYAG	1 cut(s)	408
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
SseBI	AGGCCT	2 cut(s)	19, 124
SspMI	CTAG	2 cut(s)	144, 159
SstI	GAGCTC	1 cut(s)	436
StuI	AGGCCT	2 cut(s)	19, 124
StyD4I	CCNGG	3 cut(s)	14, 283, 363
StyI	CCWWGG	3 cut(s)	64, 183, 545
TaaI	ACNGT	2 cut(s)	170, 244
TaiI	ACGT	1 cut(s)	258
TatI	WGTACW	2 cut(s)	52, 161
TscAI	CASTG	2 cut(s)	175, 247
TseFI	GTSAC	2 cut(s)	9, 518
TseI	GCWGC	1 cut(s)	131
Tsp45I	GTSAC	2 cut(s)	9, 518
TspDTI	ATGAA	2 cut(s)	101, 467
TspRI	CASTG	2 cut(s)	175, 247
VneI	GTGCAC	1 cut(s)	171
XspI	CTAG	2 cut(s)	144, 159
ZrmI	AGTACT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.