Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004911

Physical Location & Seq

Genomic Coordinates Reverse (-)

24479351 .. 24485477

Gene Structure 6127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g33790.t7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGATAGTGTATGTCCTAACAGCTCAGATTTGAAGGAGCGAAATTACATGGGATTATCTGATTGCTCTTCGGTAGACAGTTCAAAAGGCTCCGATGTAGATGGAAGTAAAAGTAGACTTAACCTGATGGCTACGGAACTTAGGCTTGGGCTTCCTGGGTCCCAGTCTCCTGAGAGAAACTCGGAACTGAGGCTAATCTCCACTCAACCTGATGAGAAGCCCCTTTTCCCATTACATCCTGTAAAGGATTCATTGCAGAAAACAATTGTTTCAGGCAACAAGAGAGGGTTCTCTGATGCTATGGATGAGTTCTCAGAGGGCAAATATGCTAATACAGATGTAAACTTGTTGATGTCACCCAGGCCTTCTCCAAACTTGGGATTGAAAAGTGGTTCTGTACCTGAGAACCATGGCACTCAGGAACCCAAAATGAAGGAGATAGTATCACAAAAGATAATACAAGAGTGCCCTCAAACTGCCACAGAAACCGGGCCAAATCATACTATTACTACCAGTGTACCTGCAAACAAGGCGCAGGTTGTGGGTTGGCCACCTATAAGATCATTTAGGAAGAACTCATTGGCCTCTTTGTCAAAGAACGCGGATGAAGTAGATGGAAAACCAGGGCCTGGTGTTCTATATGTCAAAGTCAGCATGGATGGTGCTCCTTATTTGAGGAAAGTAGATTTGAAACATTACTCAGCATACCAGGAACTTTCTTCTGCTCTTGAGAAAATGTTTAGCTGTTTTACTATAGGTCAATACGTATCTCATGGAGCTCGGGGCAGAGAGATTAGTGAAAGCAAGCTGAAGGACCTCCTTCATGGATCGGAATATGTCCTGACCTACGAGGATAAAGATGGTGACTGGATGCTTGTGGGTGATGTCCCTTGGGAGATGTTTATCAATACCTGCAAAAGGATGAGGATAATGAAAAGCTCAGATGCCATTGGCCTTGCTCCAAGAGCCATGGAGAAGTGCAGGAACAGGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

332

Amino Acids

36.54

Weight (kDa)

7.6

Isoelectric Point (pI)

47.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	69 - 347	1.7e-86	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22670 AT2G22670 AT2G22670 AT2G22670 AT2G22670
fragaria_vesca	FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790
malus_domestica	MD08G1207300.v1.1 MD15G1391700.v1.1
prunus_persica	Prupe.1G540700_v2.0.a1
pyrus_communis	pycom08g17960 pycom15g35260
rosa_chinensis	RchiOBHm_Chr7g0233101
rosa_laevigata	RLG00000001299
rosa_multiflora	Rmu_co8377091.1_g000001 Rmu_sc0001362.1_g000019
rosa_roxburghii	Rroxscaffold_3G00227660
rosa_rugosa	Rorug07G0278100 Rorug07G0278200
rosa_samantha	Rh7AG433600 Rh7BG406400 Rh7CG452800 Rh7DG422000
rosa_wichuraiana	Rw7G035740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	526, 529, 920
AccB7I	CCANNNNNTGG	1 cut(s)	629
AccI	GTMKAC	2 cut(s)	75, 115
AccII	CGCG	1 cut(s)	602
AciI	CCGC	1 cut(s)	602
AclWI	GGATC	1 cut(s)	835
AcoI	YGGCCR	1 cut(s)	548
AcuI	CTGAAG	1 cut(s)	830
AfaI	GTAC	2 cut(s)	399, 519
AfiI	CCNNNNNNNGG	3 cut(s)	377, 629, 918
AgsI	TTSAA	4 cut(s)	34, 84, 385, 691
AjnI	CCWGG	5 cut(s)	154, 359, 622, 628, 708
AjuI	GAANNNNNNNTTGG	4 cut(s)	129, 161, 563, 595
AluBI	AGCT	5 cut(s)	24, 744, 779, 808, 939
AluI	AGCT	5 cut(s)	24, 744, 779, 808, 939
Alw21I	GWGCWC	2 cut(s)	667, 781
Alw26I	GTCTC	1 cut(s)	171
AlwI	GGATC	1 cut(s)	835
AlwNI	CAGNNNCTG	1 cut(s)	629
Ama87I	CYCGRG	1 cut(s)	780
AoxI	GGCC	6 cut(s)	362, 491, 548, 582, 626, 952
AspLEI	GCGC	1 cut(s)	535
AspS9I	GGNCC	4 cut(s)	159, 491, 626, 814
AsuC2I	CCSGG	1 cut(s)	490
AsuHPI	GGTGA	3 cut(s)	348, 875, 893
AvaI	CYCGRG	1 cut(s)	780
AvaII	GGWCC	2 cut(s)	159, 814
BaeGI	GKGCMC	1 cut(s)	470
BaeI	ACNNNNGTAYC	2 cut(s)	501, 534
BalI	TGGCCA	1 cut(s)	550
BanII	GRGCYC	1 cut(s)	781
Bbv12I	GWGCWC	2 cut(s)	667, 781
BccI	CCATC	5 cut(s)	95, 121, 608, 653, 854
BciT130I	CCWGG	5 cut(s)	156, 361, 624, 630, 710
BcnI	CCSGG	1 cut(s)	490
BcoDI	GTCTC	1 cut(s)	171
BfaI	CTAG	1 cut(s)	994
BfmI	CTRYAG	1 cut(s)	753
BfuAI	ACCTGC	3 cut(s)	526, 529, 920
Bme1390I	CCNGG	6 cut(s)	156, 361, 490, 624, 630, 710
Bme18I	GGWCC	2 cut(s)	159, 814
BmeT110I	CYCGRG	1 cut(s)	780
BmgT120I	GGNCC	4 cut(s)	159, 491, 626, 814
BmiI	GGNNCC	4 cut(s)	91, 160, 161, 423
BmrFI	CCNGG	6 cut(s)	156, 361, 490, 624, 630, 710
BmrI	ACTGGG	1 cut(s)	157
BmsI	GCATC	3 cut(s)	286, 861, 934
BmuI	ACTGGG	1 cut(s)	157
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
BpuEI	CTTGAG	1 cut(s)	749
BpuMI	CCSGG	1 cut(s)	490
BsaAI	YACGTR	1 cut(s)	766
BsaBI	GATNNNNATC	1 cut(s)	902
BsaJI	CCNNGG	6 cut(s)	155, 359, 409, 623, 890, 969
Bsc4I	CCNNNNNNNGG	3 cut(s)	377, 629, 918
Bse1I	ACTGG	3 cut(s)	163, 513, 872
Bse3DI	GCAATG	1 cut(s)	251
Bse8I	GATNNNNATC	1 cut(s)	902
BseBI	CCWGG	5 cut(s)	156, 361, 624, 630, 710
BseDI	CCNNGG	6 cut(s)	155, 359, 409, 623, 890, 969
BseGI	GGATG	6 cut(s)	235, 310, 610, 664, 876, 927
BseJI	GATNNNNATC	1 cut(s)	902
BseLI	CCNNNNNNNGG	3 cut(s)	377, 629, 918
BseMI	GCAATG	1 cut(s)	251
BseMII	CTCAG	8 cut(s)	39, 162, 179, 327, 393, 431, 714, 954
BseNI	ACTGG	3 cut(s)	163, 513, 872
BseSI	GKGCMC	1 cut(s)	470
Bsh1236I	CGCG	1 cut(s)	602
BshFI	GGCC	6 cut(s)	364, 493, 550, 584, 628, 954
BsiHKAI	GWGCWC	2 cut(s)	667, 781
BsiHKCI	CYCGRG	1 cut(s)	780
BsiSI	CCGG	1 cut(s)	489
BslFI	GGGAC	2 cut(s)	145, 872
BslI	CCNNNNNNNGG	3 cut(s)	377, 629, 918
BsmAI	GTCTC	1 cut(s)	171
BsmFI	GGGAC	2 cut(s)	145, 872
BsnI	GGCC	6 cut(s)	364, 493, 550, 584, 628, 954
BsoBI	CYCGRG	1 cut(s)	780
Bsp1286I	GDGCHC	3 cut(s)	470, 667, 781
Bsp143I	GATC	2 cut(s)	560, 827
Bsp19I	CCATGG	2 cut(s)	409, 969
BspACI	CCGC	1 cut(s)	602
BspANI	GGCC	6 cut(s)	364, 493, 550, 584, 628, 954
BspCNI	CTCAG	8 cut(s)	38, 163, 180, 326, 394, 430, 713, 953
BspFNI	CGCG	1 cut(s)	602
BspLI	GGNNCC	4 cut(s)	91, 160, 161, 423
BspMI	ACCTGC	3 cut(s)	526, 529, 920
BspPI	GGATC	1 cut(s)	835
BspQI	GCTCTTC	1 cut(s)	73
BsrDI	GCAATG	1 cut(s)	251
BsrI	ACTGG	3 cut(s)	163, 513, 872
BssECI	CCNNGG	6 cut(s)	155, 359, 409, 623, 890, 969
BssMI	GATC	2 cut(s)	560, 827
BssT1I	CCWWGG	3 cut(s)	409, 890, 969
Bst2UI	CCWGG	5 cut(s)	156, 361, 624, 630, 710
Bst4CI	ACNGT	1 cut(s)	80
Bst6I	CTCTTC	1 cut(s)	73
BstBAI	YACGTR	1 cut(s)	766
BstC8I	GCNNGC	1 cut(s)	806
BstDEI	CTNAG	9 cut(s)	25, 140, 171, 188, 313, 402, 417, 700, 940
BstDSI	CCRYGG	2 cut(s)	409, 969
BstENI	CCTNNNNNAGG	1 cut(s)	916
BstF5I	GGATG	6 cut(s)	235, 310, 610, 664, 876, 927
BstFNI	CGCG	1 cut(s)	602
BstHHI	GCGC	1 cut(s)	535
BstKTI	GATC	2 cut(s)	563, 830
BstMAI	GTCTC	1 cut(s)	171
BstMBI	GATC	2 cut(s)	560, 827
BstMWI	GCNNNNNNNGC	2 cut(s)	530, 965
BstNI	CCWGG	5 cut(s)	156, 361, 624, 630, 710
BstSCI	CCNGG	6 cut(s)	154, 359, 488, 622, 628, 708
BstSFI	CTRYAG	1 cut(s)	753
BstSLI	GKGCMC	1 cut(s)	470
BstSNI	TACGTA	1 cut(s)	766
BstUI	CGCG	1 cut(s)	602
BsuRI	GGCC	6 cut(s)	364, 493, 550, 584, 628, 954
BtgI	CCRYGG	2 cut(s)	409, 969
BtsCI	GGATG	6 cut(s)	235, 310, 610, 664, 876, 927
BtsIMutI	CAGTG	1 cut(s)	520
BveI	ACCTGC	3 cut(s)	526, 529, 920
Cac8I	GCNNGC	1 cut(s)	806
CaiI	CAGNNNCTG	1 cut(s)	629
CfoI	GCGC	1 cut(s)	535
Cfr13I	GGNCC	4 cut(s)	159, 491, 626, 814
Csp6I	GTAC	2 cut(s)	398, 518
CviAII	CATG	6 cut(s)	49, 410, 655, 773, 824, 970
CviQI	GTAC	2 cut(s)	398, 518
DdeI	CTNAG	9 cut(s)	25, 140, 171, 188, 313, 402, 417, 700, 940
DpnI	GATC	2 cut(s)	562, 829
DpnII	GATC	2 cut(s)	560, 827
EaeI	YGGCCR	1 cut(s)	548
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
Ecl136II	GAGCTC	1 cut(s)	779
Eco105I	TACGTA	1 cut(s)	766
Eco130I	CCWWGG	3 cut(s)	409, 890, 969
Eco147I	AGGCCT	1 cut(s)	364
Eco24I	GRGCYC	1 cut(s)	781
Eco47I	GGWCC	2 cut(s)	159, 814
Eco53kI	GAGCTC	1 cut(s)	779
Eco57I	CTGAAG	1 cut(s)	830
Eco88I	CYCGRG	1 cut(s)	780
EcoICRI	GAGCTC	1 cut(s)	779
EcoNI	CCTNNNNNAGG	1 cut(s)	916
EcoO109I	RGGNCCY	3 cut(s)	159, 626, 814
EcoRII	CCWGG	5 cut(s)	154, 359, 622, 628, 708
EcoT14I	CCWWGG	3 cut(s)	409, 890, 969
EcoT38I	GRGCYC	1 cut(s)	781
ErhI	CCWWGG	3 cut(s)	409, 890, 969
FaeI	CATG	6 cut(s)	52, 413, 658, 776, 827, 973
FaqI	GGGAC	2 cut(s)	145, 872
FatI	CATG	6 cut(s)	48, 409, 654, 772, 823, 969
FblI	GTMKAC	2 cut(s)	75, 115
FokI	GGATG	6 cut(s)	222, 317, 617, 671, 883, 934
FriOI	GRGCYC	1 cut(s)	781
FspBI	CTAG	1 cut(s)	994
GlaI	GCGC	1 cut(s)	534
HaeIII	GGCC	6 cut(s)	364, 493, 550, 584, 628, 954
HapII	CCGG	1 cut(s)	489
HhaI	GCGC	1 cut(s)	535
Hin1II	CATG	6 cut(s)	52, 413, 658, 776, 827, 973
Hin6I	GCGC	1 cut(s)	533
HinP1I	GCGC	1 cut(s)	533
HinfI	GANTC	1 cut(s)	248
HpaII	CCGG	1 cut(s)	489
HphI	GGTGA	3 cut(s)	348, 875, 893
Hpy166II	GTNNAC	4 cut(s)	76, 116, 343, 518
Hpy188I	TCNGA	8 cut(s)	28, 61, 94, 184, 295, 316, 832, 943
Hpy188III	TCNNGA	4 cut(s)	170, 419, 728, 841
Hpy8I	GTNNAC	4 cut(s)	76, 116, 343, 518
HpyAV	CCTTC	5 cut(s)	28, 375, 427, 805, 830
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4IV	ACGT	1 cut(s)	765
HpyCH4V	TGCA	4 cut(s)	256, 524, 915, 981
HpyF10VI	GCNNNNNNNGC	2 cut(s)	530, 965
HpyF3I	CTNAG	9 cut(s)	25, 140, 171, 188, 313, 402, 417, 700, 940
HpySE526I	ACGT	1 cut(s)	765
Hsp92II	CATG	6 cut(s)	52, 413, 658, 776, 827, 973
HspAI	GCGC	1 cut(s)	533
KflI	GGGWCCC	1 cut(s)	159
Kzo9I	GATC	2 cut(s)	560, 827
LguI	GCTCTTC	1 cut(s)	73
LmnI	GCTCC	5 cut(s)	37, 95, 670, 776, 964
LweI	GCATC	3 cut(s)	286, 861, 934
MaeI	CTAG	1 cut(s)	994
MaeII	ACGT	1 cut(s)	765
MaeIII	GTNAC	2 cut(s)	354, 863
MalI	GATC	2 cut(s)	562, 829
MboI	GATC	2 cut(s)	560, 827
MboII	GAAGA	3 cut(s)	60, 583, 711
MfeI	CAATTG	1 cut(s)	264
MhlI	GDGCHC	3 cut(s)	470, 667, 781
MlsI	TGGCCA	1 cut(s)	550
MluCI	AATT	2 cut(s)	43, 264
MluNI	TGGCCA	1 cut(s)	550
MnlI	CCTC	9 cut(s)	183, 278, 310, 480, 595, 669, 827, 844, 918
Mox20I	TGGCCA	1 cut(s)	550
MscI	TGGCCA	1 cut(s)	550
MseI	TTAA	1 cut(s)	120
Msp20I	TGGCCA	1 cut(s)	550
MspI	CCGG	1 cut(s)	489
MspR9I	CCNGG	6 cut(s)	156, 361, 490, 624, 630, 710
MunI	CAATTG	1 cut(s)	264
MvaI	CCWGG	5 cut(s)	156, 361, 624, 630, 710
MvnI	CGCG	1 cut(s)	602
MwoI	GCNNNNNNNGC	2 cut(s)	530, 965
NciI	CCSGG	1 cut(s)	490
NcoI	CCATGG	2 cut(s)	409, 969
NdeII	GATC	2 cut(s)	560, 827
NlaIII	CATG	6 cut(s)	52, 413, 658, 776, 827, 973
NlaIV	GGNNCC	4 cut(s)	91, 160, 161, 423
NmuCI	GTSAC	2 cut(s)	354, 863
PceI	AGGCCT	1 cut(s)	364
PciSI	GCTCTTC	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	248
PflMI	CCANNNNNTGG	1 cut(s)	629
Ppu21I	YACGTR	1 cut(s)	766
PpuMI	RGGWCCY	2 cut(s)	159, 814
Psp124BI	GAGCTC	1 cut(s)	781
Psp5II	RGGWCCY	2 cut(s)	159, 814
Psp6I	CCWGG	5 cut(s)	154, 359, 622, 628, 708
PspGI	CCWGG	5 cut(s)	154, 359, 622, 628, 708
PspN4I	GGNNCC	4 cut(s)	91, 160, 161, 423
PspPI	GGNCC	4 cut(s)	159, 491, 626, 814
PspPPI	RGGWCCY	2 cut(s)	159, 814
PstNI	CAGNNNCTG	1 cut(s)	629
RsaI	GTAC	2 cut(s)	399, 519
RsaNI	GTAC	2 cut(s)	398, 518
SacI	GAGCTC	1 cut(s)	781
SapI	GCTCTTC	1 cut(s)	73
SaqAI	TTAA	1 cut(s)	120
Sau3AI	GATC	2 cut(s)	560, 827
Sau96I	GGNCC	4 cut(s)	159, 491, 626, 814
ScrFI	CCNGG	6 cut(s)	156, 361, 490, 624, 630, 710
SduI	GDGCHC	3 cut(s)	470, 667, 781
SfaNI	GCATC	3 cut(s)	286, 861, 934
SfcI	CTRYAG	1 cut(s)	753
SinI	GGWCC	2 cut(s)	159, 814
SmlI	CTYRAG	1 cut(s)	728
SmoI	CTYRAG	1 cut(s)	728
SnaBI	TACGTA	1 cut(s)	766
Sse9I	AATT	2 cut(s)	43, 264
SseBI	AGGCCT	1 cut(s)	364
SsiI	CCGC	1 cut(s)	602
SspMI	CTAG	1 cut(s)	994
SstI	GAGCTC	1 cut(s)	781
StuI	AGGCCT	1 cut(s)	364
StyD4I	CCNGG	6 cut(s)	154, 359, 488, 622, 628, 708
StyI	CCWWGG	3 cut(s)	409, 890, 969
TaaI	ACNGT	1 cut(s)	80
TaiI	ACGT	1 cut(s)	768
TasI	AATT	2 cut(s)	43, 264
TfiI	GAWTC	1 cut(s)	248
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TscAI	CASTG	1 cut(s)	520
TseFI	GTSAC	2 cut(s)	354, 863
Tsp45I	GTSAC	2 cut(s)	354, 863
TspDTI	ATGAA	5 cut(s)	240, 446, 621, 812, 947
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	1 cut(s)	520
Van91I	CCANNNNNTGG	1 cut(s)	629
VpaK11BI	GGWCC	2 cut(s)	159, 814
XagI	CCTNNNNNAGG	1 cut(s)	916
XmiI	GTMKAC	2 cut(s)	75, 115
XspI	CTAG	1 cut(s)	994

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.