Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004911

Physical Location & Seq

Genomic Coordinates Reverse (-)

26651265 .. 26652089

Gene Structure 825 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0278200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGAGCTACAAACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGAGAGTAGTGCCAACACAGATTTCTGGCGAAGCCGTGCCAGGTGGGTTCCTACTCCAGATCAAATAAGGATCCTCAGGGATCTTTACTACGACAAGGGAGTTAAGACCCCAACTACAGAGCATATTCACGAGATCTGTCTCCAGCTGCAACAGTATGGACAGGTTGAGGGCAAGAACATTTATTTTTGGTTCCAGAATGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTACTGGTGGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGTGGATCTATCGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTAATCTCAACTTTGGTTCCACCGATTCTACTGGTAATGAAGGATTTCTTGATTTAAATTTTGTTTCATATTCTTCCTCACACTTCAACACTAATACCAGTACAACTCTTTTGGCACAACAGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTGAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCCGAAGACTACTTCCGAGGAAGGTAGCGCATTTGGTTACTATTCTGGTGGCTCAGGCGGTTACAACAGTGGCTCTAACGTTTCTCTTGAGCTCAGCCTCAATCCATCCGGAGCTGCTGACTAGGCTTAGCATAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

274

Amino Acids

30.05

Weight (kDa)

6.3

Isoelectric Point (pI)

45.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	30 - 91	1.9e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22670 AT2G22670 AT2G22670 AT2G22670 AT2G22670
fragaria_vesca	FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790
malus_domestica	MD08G1207300.v1.1 MD15G1391700.v1.1
prunus_persica	Prupe.1G540700_v2.0.a1
pyrus_communis	pycom08g17960 pycom15g35260
rosa_chinensis	RchiOBHm_Chr7g0233101
rosa_laevigata	RLG00000001299
rosa_multiflora	Rmu_co8377091.1_g000001 Rmu_sc0001362.1_g000019
rosa_roxburghii	Rroxscaffold_3G00227660
rosa_rugosa	Rorug07G0278100 Rorug07G0278200
rosa_samantha	Rh7AG433600 Rh7BG406400 Rh7CG452800 Rh7DG422000
rosa_wichuraiana	Rw7G035740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	677
AccB7I	CCANNNNNTGG	1 cut(s)	413
AccIII	TCCGGA	1 cut(s)	793
AciI	CCGC	1 cut(s)	743
AclI	AACGTT	1 cut(s)	764
AclWI	GGATC	9 cut(s)	118, 131, 141, 330, 343, 391, 411, 424, 459
AcsI	RAATTY	1 cut(s)	526
AcyI	GRCGYC	1 cut(s)	674
AfaI	GTAC	2 cut(s)	328, 571
AfiI	CCNNNNNNNGG	3 cut(s)	329, 413, 664
AgsI	TTSAA	2 cut(s)	556, 640
AhlI	ACTAGT	2 cut(s)	314, 443
AjnI	CCWGG	3 cut(s)	92, 322, 629
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AloI	GAACNNNNNNTCC	2 cut(s)	304, 336
AluBI	AGCT	5 cut(s)	7, 199, 410, 777, 799
AluI	AGCT	5 cut(s)	7, 199, 410, 777, 799
Alw21I	GWGCWC	2 cut(s)	665, 779
Alw26I	GTCTC	1 cut(s)	197
Alw44I	GTGCAC	1 cut(s)	661
AlwI	GGATC	9 cut(s)	118, 131, 141, 330, 343, 391, 411, 424, 459
Ama87I	CYCGRG	1 cut(s)	261
Aor13HI	TCCGGA	1 cut(s)	793
AoxI	GGCC	1 cut(s)	404
ApaLI	GTGCAC	1 cut(s)	661
ApeKI	GCWGC	4 cut(s)	50, 199, 293, 799
ApoI	RAATTY	1 cut(s)	526
ArsI	GACNNNNNNTTYG	4 cut(s)	383, 415, 416, 448
AseI	ATTAAT	1 cut(s)	471
Asp700I	GAANNNNTTC	3 cut(s)	316, 513, 644
AspLEI	GCGC	1 cut(s)	715
AspS9I	GGNCC	3 cut(s)	357, 404, 438
AsuHPI	GGTGA	1 cut(s)	619
AvaI	CYCGRG	1 cut(s)	261
AvaII	GGWCC	2 cut(s)	357, 438
AxyI	CCTNAGG	1 cut(s)	128
BaeGI	GKGCMC	2 cut(s)	306, 665
BamHI	GGATCC	3 cut(s)	123, 335, 416
BanII	GRGCYC	2 cut(s)	262, 779
BauI	CACGAG	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	697
Bbv12I	GWGCWC	2 cut(s)	665, 779
BbvI	GCAGC	4 cut(s)	62, 186, 280, 786
BccI	CCATC	3 cut(s)	26, 452, 798
BceAI	ACGGC	2 cut(s)	72, 681
BcgI	CGANNNNNNTGC	2 cut(s)	44, 78
BciT130I	CCWGG	3 cut(s)	94, 324, 631
BcoDI	GTCTC	1 cut(s)	197
BcuI	ACTAGT	2 cut(s)	314, 443
BfaI	CTAG	3 cut(s)	315, 444, 807
BfmI	CTRYAG	1 cut(s)	168
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	4 cut(s)	51, 200, 294, 800
BlpI	GCTNAGC	2 cut(s)	778, 812
BlsI	GCNGC	4 cut(s)	52, 201, 295, 801
Bme1390I	CCNGG	3 cut(s)	94, 324, 631
Bme18I	GGWCC	2 cut(s)	357, 438
BmeT110I	CYCGRG	1 cut(s)	261
BmgT120I	GGNCC	3 cut(s)	357, 404, 438
BmiI	GGNNCC	8 cut(s)	102, 125, 245, 337, 358, 418, 439, 487
BmrFI	CCNGG	3 cut(s)	94, 324, 631
BpiI	GAAGAC	1 cut(s)	697
BpmI	CTGGAG	2 cut(s)	93, 179
Bpu10I	CCTNAGC	1 cut(s)	738
Bpu1102I	GCTNAGC	2 cut(s)	778, 812
BpuEI	CTTGAG	2 cut(s)	282, 793
BsaHI	GRCGYC	1 cut(s)	674
BsaJI	CCNNGG	2 cut(s)	306, 701
BsaWI	WCCGGW	1 cut(s)	793
BsaXI	ACNNNNNCTCC	2 cut(s)	304, 334
Bsc4I	CCNNNNNNNGG	3 cut(s)	329, 413, 664
Bse1I	ACTGG	5 cut(s)	334, 367, 376, 505, 567
Bse21I	CCTNAGG	1 cut(s)	128
BseAI	TCCGGA	1 cut(s)	793
BseBI	CCWGG	3 cut(s)	94, 324, 631
BseDI	CCNNGG	2 cut(s)	306, 701
BseGI	GGATG	3 cut(s)	37, 601, 790
BseLI	CCNNNNNNNGG	3 cut(s)	329, 413, 664
BseMII	CTCAG	3 cut(s)	142, 752, 792
BseNI	ACTGG	5 cut(s)	334, 367, 376, 505, 567
BseRI	GAGGAG	2 cut(s)	632, 635
BseSI	GKGCMC	2 cut(s)	306, 665
BseXI	GCAGC	4 cut(s)	62, 186, 280, 786
BseYI	CCCAGC	1 cut(s)	15
BshFI	GGCC	1 cut(s)	406
BsiHKAI	GWGCWC	2 cut(s)	665, 779
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	794
BslI	CCNNNNNNNGG	3 cut(s)	329, 413, 664
BsmAI	GTCTC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	406
BsoBI	CYCGRG	1 cut(s)	261
Bsp1286I	GDGCHC	4 cut(s)	262, 306, 665, 779
Bsp13I	TCCGGA	1 cut(s)	793
Bsp1720I	GCTNAGC	2 cut(s)	778, 812
Bsp19I	CCATGG	1 cut(s)	306
BspACI	CCGC	1 cut(s)	743
BspANI	GGCC	1 cut(s)	406
BspCNI	CTCAG	3 cut(s)	141, 751, 791
BspEI	TCCGGA	1 cut(s)	793
BspLI	GGNNCC	8 cut(s)	102, 125, 245, 337, 358, 418, 439, 487
BspPI	GGATC	9 cut(s)	118, 131, 141, 330, 343, 391, 411, 424, 459
BsrI	ACTGG	5 cut(s)	334, 367, 376, 505, 567
BssECI	CCNNGG	2 cut(s)	306, 701
BssNI	GRCGYC	1 cut(s)	674
BssSI	CACGAG	1 cut(s)	182
BssT1I	CCWWGG	1 cut(s)	306
Bst2BI	CACGAG	1 cut(s)	182
Bst2UI	CCWGG	3 cut(s)	94, 324, 631
Bst4CI	ACNGT	2 cut(s)	207, 754
Bst6I	CTCTTC	2 cut(s)	272, 650
BstACI	GRCGYC	1 cut(s)	674
BstC8I	GCNNGC	1 cut(s)	408
BstDEI	CTNAG	4 cut(s)	128, 738, 778, 812
BstDSI	CCRYGG	1 cut(s)	306
BstEII	GGTNACC	1 cut(s)	682
BstF5I	GGATG	3 cut(s)	37, 601, 790
BstHHI	GCGC	1 cut(s)	715
BstMAI	GTCTC	1 cut(s)	197
BstMWI	GCNNNNNNNGC	1 cut(s)	808
BstNI	CCWGG	3 cut(s)	94, 324, 631
BstPI	GGTNACC	1 cut(s)	682
BstSCI	CCNGG	3 cut(s)	92, 322, 629
BstSFI	CTRYAG	1 cut(s)	168
BstSLI	GKGCMC	2 cut(s)	306, 665
BstV1I	GCAGC	4 cut(s)	62, 186, 280, 786
BstV2I	GAAGAC	1 cut(s)	697
BstX2I	RGATCY	7 cut(s)	123, 133, 186, 335, 383, 416, 464
BstYI	RGATCY	7 cut(s)	123, 133, 186, 335, 383, 416, 464
Bsu36I	CCTNAGG	1 cut(s)	128
BsuRI	GGCC	1 cut(s)	406
BtgI	CCRYGG	1 cut(s)	306
BtsCI	GGATG	3 cut(s)	37, 601, 790
BtsIMutI	CAGTG	2 cut(s)	360, 759
Cac8I	GCNNGC	1 cut(s)	408
CfoI	GCGC	1 cut(s)	715
Cfr13I	GGNCC	3 cut(s)	357, 404, 438
Csp6I	GTAC	2 cut(s)	327, 570
CviAII	CATG	1 cut(s)	307
CviQI	GTAC	2 cut(s)	327, 570
DdeI	CTNAG	4 cut(s)	128, 738, 778, 812
DraI	TTTAAA	1 cut(s)	525
Eam1104I	CTCTTC	2 cut(s)	272, 650
EarI	CTCTTC	2 cut(s)	272, 650
Ecl136II	GAGCTC	1 cut(s)	777
Eco130I	CCWWGG	1 cut(s)	306
Eco24I	GRGCYC	2 cut(s)	262, 779
Eco47I	GGWCC	2 cut(s)	357, 438
Eco53kI	GAGCTC	1 cut(s)	777
Eco81I	CCTNAGG	1 cut(s)	128
Eco88I	CYCGRG	1 cut(s)	261
Eco91I	GGTNACC	1 cut(s)	682
EcoICRI	GAGCTC	1 cut(s)	777
EcoO65I	GGTNACC	1 cut(s)	682
EcoRII	CCWGG	3 cut(s)	92, 322, 629
EcoT14I	CCWWGG	1 cut(s)	306
EcoT38I	GRGCYC	2 cut(s)	262, 779
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	1 cut(s)	310
FaiI	YATR	6 cut(s)	177, 210, 308, 538, 818, 823
FalI	AAGNNNNNCTT	2 cut(s)	501, 533
FatI	CATG	1 cut(s)	306
Fnu4HI	GCNGC	4 cut(s)	51, 200, 294, 800
FokI	GGATG	3 cut(s)	44, 588, 777
FriOI	GRGCYC	2 cut(s)	262, 779
Fsp4HI	GCNGC	4 cut(s)	51, 200, 294, 800
FspBI	CTAG	3 cut(s)	315, 444, 807
GlaI	GCGC	1 cut(s)	714
GluI	GCNGC	4 cut(s)	51, 200, 294, 800
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	2 cut(s)	93, 179
HaeIII	GGCC	1 cut(s)	406
HapII	CCGG	1 cut(s)	794
HhaI	GCGC	1 cut(s)	715
Hin1I	GRCGYC	1 cut(s)	674
Hin1II	CATG	1 cut(s)	310
Hin6I	GCGC	1 cut(s)	713
HinP1I	GCGC	1 cut(s)	713
HinfI	GANTC	1 cut(s)	494
HpaII	CCGG	1 cut(s)	794
HphI	GGTGA	1 cut(s)	619
Hpy166II	GTNNAC	3 cut(s)	360, 441, 663
Hpy188I	TCNGA	1 cut(s)	702
Hpy188III	TCNNGA	7 cut(s)	110, 182, 247, 263, 518, 772, 794
Hpy8I	GTNNAC	3 cut(s)	360, 441, 663
HpyAV	CCTTC	2 cut(s)	503, 700
HpyCH4III	ACNGT	2 cut(s)	207, 754
HpyCH4IV	ACGT	2 cut(s)	674, 764
HpyCH4V	TGCA	4 cut(s)	202, 285, 609, 663
HpyF10VI	GCNNNNNNNGC	1 cut(s)	808
HpyF3I	CTNAG	4 cut(s)	128, 738, 778, 812
HpySE526I	ACGT	2 cut(s)	674, 764
Hsp92I	GRCGYC	1 cut(s)	674
Hsp92II	CATG	1 cut(s)	310
HspAI	GCGC	1 cut(s)	713
Kpn2I	TCCGGA	1 cut(s)	793
LmnI	GCTCC	2 cut(s)	4, 796
Lsp1109I	GCAGC	4 cut(s)	62, 186, 280, 786
MaeI	CTAG	3 cut(s)	315, 444, 807
MaeII	ACGT	2 cut(s)	674, 764
MaeIII	GTNAC	3 cut(s)	682, 721, 745
MboII	GAAGA	4 cut(s)	289, 534, 637, 702
MflI	RGATCY	7 cut(s)	123, 133, 186, 335, 383, 416, 464
MhlI	GDGCHC	4 cut(s)	262, 306, 665, 779
MluCI	AATT	4 cut(s)	349, 397, 430, 526
MroI	TCCGGA	1 cut(s)	793
MroXI	GAANNNNTTC	3 cut(s)	316, 513, 644
MseI	TTAA	3 cut(s)	156, 471, 524
MspA1I	CMGCKG	2 cut(s)	199, 410
MspI	CCGG	1 cut(s)	794
MspR9I	CCNGG	3 cut(s)	94, 324, 631
MvaI	CCWGG	3 cut(s)	94, 324, 631
MwoI	GCNNNNNNNGC	1 cut(s)	808
NcoI	CCATGG	1 cut(s)	306
NlaIII	CATG	1 cut(s)	310
NlaIV	GGNNCC	8 cut(s)	102, 125, 245, 337, 358, 418, 439, 487
NmeAIII	GCCGAG	1 cut(s)	79
PaeR7I	CTCGAG	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	1 cut(s)	671
PdmI	GAANNNNTTC	3 cut(s)	316, 513, 644
PfeI	GAWTC	1 cut(s)	494
PflMI	CCANNNNNTGG	1 cut(s)	413
PkrI	GCNGC	4 cut(s)	52, 201, 295, 801
PshBI	ATTAAT	1 cut(s)	471
Psp124BI	GAGCTC	1 cut(s)	779
Psp1406I	AACGTT	1 cut(s)	764
Psp6I	CCWGG	3 cut(s)	92, 322, 629
PspEI	GGTNACC	1 cut(s)	682
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	3 cut(s)	92, 322, 629
PspN4I	GGNNCC	8 cut(s)	102, 125, 245, 337, 358, 418, 439, 487
PspPI	GGNCC	3 cut(s)	357, 404, 438
PsuI	RGATCY	7 cut(s)	123, 133, 186, 335, 383, 416, 464
PvuII	CAGCTG	2 cut(s)	199, 410
RsaI	GTAC	2 cut(s)	328, 571
RsaNI	GTAC	2 cut(s)	327, 570
SacI	GAGCTC	1 cut(s)	779
SaqAI	TTAA	3 cut(s)	156, 471, 524
SatI	GCNGC	4 cut(s)	51, 200, 294, 800
Sau96I	GGNCC	3 cut(s)	357, 404, 438
ScrFI	CCNGG	3 cut(s)	94, 324, 631
SduI	GDGCHC	4 cut(s)	262, 306, 665, 779
SfcI	CTRYAG	1 cut(s)	168
Sfr274I	CTCGAG	1 cut(s)	261
SinI	GGWCC	2 cut(s)	357, 438
SlaI	CTCGAG	1 cut(s)	261
SmiI	ATTTAAAT	1 cut(s)	525
SmlI	CTYRAG	3 cut(s)	261, 297, 772
SmoI	CTYRAG	3 cut(s)	261, 297, 772
SpeI	ACTAGT	2 cut(s)	314, 443
Sse9I	AATT	4 cut(s)	349, 397, 430, 526
SsiI	CCGC	1 cut(s)	743
SspMI	CTAG	3 cut(s)	315, 444, 807
SstI	GAGCTC	1 cut(s)	779
StyD4I	CCNGG	3 cut(s)	92, 322, 629
StyI	CCWWGG	1 cut(s)	306
SwaI	ATTTAAAT	1 cut(s)	525
TaaI	ACNGT	2 cut(s)	207, 754
TaiI	ACGT	2 cut(s)	677, 767
TaqI	TCGA	3 cut(s)	27, 262, 390
TasI	AATT	4 cut(s)	349, 397, 430, 526
TatI	WGTACW	1 cut(s)	569
TfiI	GAWTC	1 cut(s)	494
Tru1I	TTAA	3 cut(s)	156, 471, 524
Tru9I	TTAA	3 cut(s)	156, 471, 524
TscAI	CASTG	2 cut(s)	367, 759
TseI	GCWGC	4 cut(s)	50, 199, 293, 799
TspDTI	ATGAA	3 cut(s)	290, 522, 525
TspRI	CASTG	2 cut(s)	367, 759
Van91I	CCANNNNNTGG	1 cut(s)	413
VneI	GTGCAC	1 cut(s)	661
VpaK11BI	GGWCC	2 cut(s)	357, 438
VspI	ATTAAT	1 cut(s)	471
XapI	RAATTY	1 cut(s)	526
XhoI	CTCGAG	1 cut(s)	261
XmnI	GAANNNNTTC	3 cut(s)	316, 513, 644
XspI	CTAG	3 cut(s)	315, 444, 807
ZraI	GACGTC	1 cut(s)	675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.