Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004911

Physical Location & Seq

Genomic Coordinates Forward (+)

13700261 .. 13704265

Gene Structure 4005 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001299

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGAGAGTGTATGTCCTAACAGCTCAGATTTGAAGGAGCGAAATTACATGGGATTATCTGATTGCTCTTCAGTAGACAGTTCAAAAGTCTCCCATGTAGATGGAAGTAAAAGTAGACTGAACCTGAAGGCTACGGAACTTAGGCTTGGGCTTCCTGGATCCCGGTCTCCTGACAGAGACTTAGAACTGAGGCTAGTCTCCACTGAACTTGATGAGAAGCCCCTTTTCCCATTACATCCTTTAAAGGATTCATTGCAGAAAACAGTTGTTTCAGGCAACAAGAGAGGGTTCTCTGATGCTATGGATGAGTTCTCAGAGGGCAAATATGCTAATACAGAGGTAAATATGTTGCTGTCGCCCAGGCCTTCTCCAAACTTGGGATTGAAAACTGGTTCTGTACTTGAGAACCTTGGGACTCAGGAGCCCAAAATGAAAGAGATAGCACCTCCAAAGATAATGCAAGAGAGGCCTCATGCTGCCAAAGAAACTAGGCCAAATCATTCTAGTACTAACAGTGCACCTGCTACCAAGGCGCAGGTTGTTGGTTGGCCACCTATAAGATCATTTAGGAAGAACTCATTGGCCACTGTCTCAAAGAACGTGGAGGAAGTAGATGGAAAAGCAGGGCCTGGTGCTCTATATGTCAAAGTCAGCATGGATGGTGCTCCTTATTTGAGGAAAGTAGATTTGAAACATTACTCTGCATACCAGGAACTTTCTTCTGCTCTTGAAAAGATGTTTAGCTGTTTTACTATAGGTCAATATGGATCTCATGGAGCTCTGGGCAGAGAGATTAGTGAAAGCAAGCTGAAGGATCTCCTTCATGGCTCAGAATATGTCCTCACCTACGAGGACAAAGATGGTGACTGGATGCTTGTGGGTGATGTCCCTTGGGAGATGTTTATTGATACCTGCAAAAGGATGAGGATCATGAAAAGCTCAGATGCCATTGGCCTTGCTCCAAGAGCCATGGAGAAGTGCAGGAACAGGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

332

Amino Acids

36.64

Weight (kDa)

8.44

Isoelectric Point (pI)

42.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	44 - 322	7.3e-88	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22670 AT2G22670 AT2G22670 AT2G22670 AT2G22670
fragaria_vesca	FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790
malus_domestica	MD08G1207300.v1.1 MD15G1391700.v1.1
prunus_persica	Prupe.1G540700_v2.0.a1
pyrus_communis	pycom08g17960 pycom15g35260
rosa_chinensis	RchiOBHm_Chr7g0233101
rosa_laevigata	RLG00000001299
rosa_multiflora	Rmu_co8377091.1_g000001 Rmu_sc0001362.1_g000019
rosa_roxburghii	Rroxscaffold_3G00227660
rosa_rugosa	Rorug07G0278100 Rorug07G0278200
rosa_samantha	Rh7AG433600 Rh7BG406400 Rh7CG452800 Rh7DG422000
rosa_wichuraiana	Rw7G035740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	529
Acc36I	ACCTGC	3 cut(s)	526, 529, 920
AccI	GTMKAC	2 cut(s)	75, 115
AclWI	GGATC	5 cut(s)	153, 166, 775, 822, 935
AcoI	YGGCCR	2 cut(s)	548, 582
AcuI	CTGAAG	3 cut(s)	54, 146, 830
AfaI	GTAC	2 cut(s)	399, 508
AfiI	CCNNNNNNNGG	2 cut(s)	377, 918
AgsI	TTSAA	5 cut(s)	34, 84, 385, 691, 731
AjnI	CCWGG	4 cut(s)	154, 359, 628, 708
AjuI	GAANNNNNNNTTGG	4 cut(s)	129, 161, 563, 595
AluBI	AGCT	5 cut(s)	24, 744, 779, 808, 939
AluI	AGCT	5 cut(s)	24, 744, 779, 808, 939
Alw21I	GWGCWC	4 cut(s)	520, 637, 667, 781
Alw26I	GTCTC	5 cut(s)	94, 171, 171, 202, 595
Alw44I	GTGCAC	1 cut(s)	516
AlwI	GGATC	5 cut(s)	153, 166, 775, 822, 935
AlwNI	CAGNNNCTG	1 cut(s)	629
AoxI	GGCC	7 cut(s)	362, 467, 491, 548, 582, 626, 952
ApaLI	GTGCAC	1 cut(s)	516
ApeKI	GCWGC	1 cut(s)	476
AspLEI	GCGC	1 cut(s)	535
AspS9I	GGNCC	1 cut(s)	626
AsuC2I	CCSGG	1 cut(s)	163
AsuHPI	GGTGA	3 cut(s)	835, 875, 893
BaeGI	GKGCMC	1 cut(s)	520
BalI	TGGCCA	2 cut(s)	550, 584
BamHI	GGATCC	1 cut(s)	158
BanII	GRGCYC	2 cut(s)	426, 781
Bbv12I	GWGCWC	4 cut(s)	520, 637, 667, 781
BbvI	GCAGC	1 cut(s)	463
BccI	CCATC	4 cut(s)	95, 608, 653, 854
BciT130I	CCWGG	4 cut(s)	156, 361, 630, 710
BcnI	CCSGG	1 cut(s)	163
BcoDI	GTCTC	5 cut(s)	94, 171, 171, 202, 595
BfaI	CTAG	4 cut(s)	194, 489, 504, 994
BfmI	CTRYAG	1 cut(s)	753
BfuAI	ACCTGC	3 cut(s)	526, 529, 920
BisI	GCNGC	1 cut(s)	477
BlsI	GCNGC	1 cut(s)	478
BmcAI	AGTACT	1 cut(s)	508
Bme1390I	CCNGG	5 cut(s)	156, 163, 361, 630, 710
BmgT120I	GGNCC	1 cut(s)	626
BmiI	GGNNCC	2 cut(s)	160, 423
BmrFI	CCNGG	5 cut(s)	156, 163, 361, 630, 710
BmsI	GCATC	3 cut(s)	286, 861, 934
BpuEI	CTTGAG	1 cut(s)	422
BpuMI	CCSGG	1 cut(s)	163
BsaBI	GATNNNNATC	1 cut(s)	926
BsaI	GGTCTC	1 cut(s)	171
BsaJI	CCNNGG	5 cut(s)	359, 409, 528, 890, 969
Bsc4I	CCNNNNNNNGG	2 cut(s)	377, 918
Bse1I	ACTGG	2 cut(s)	394, 872
Bse3DI	GCAATG	1 cut(s)	251
Bse8I	GATNNNNATC	1 cut(s)	926
BseBI	CCWGG	4 cut(s)	156, 361, 630, 710
BseDI	CCNNGG	5 cut(s)	359, 409, 528, 890, 969
BseGI	GGATG	5 cut(s)	235, 310, 664, 876, 927
BseJI	GATNNNNATC	1 cut(s)	926
BseLI	CCNNNNNNNGG	2 cut(s)	377, 918
BseMI	GCAATG	1 cut(s)	251
BseMII	CTCAG	6 cut(s)	39, 179, 327, 431, 843, 954
BseNI	ACTGG	2 cut(s)	394, 872
BseSI	GKGCMC	1 cut(s)	520
BseXI	GCAGC	1 cut(s)	463
BshFI	GGCC	7 cut(s)	364, 469, 493, 550, 584, 628, 954
BsiHKAI	GWGCWC	4 cut(s)	520, 637, 667, 781
BsiSI	CCGG	1 cut(s)	163
BslFI	GGGAC	2 cut(s)	427, 872
BslI	CCNNNNNNNGG	2 cut(s)	377, 918
BsmAI	GTCTC	5 cut(s)	94, 171, 171, 202, 595
BsmFI	GGGAC	2 cut(s)	427, 872
BsnI	GGCC	7 cut(s)	364, 469, 493, 550, 584, 628, 954
Bso31I	GGTCTC	1 cut(s)	171
Bsp1286I	GDGCHC	5 cut(s)	426, 520, 637, 667, 781
Bsp143I	GATC	5 cut(s)	158, 560, 767, 814, 927
Bsp19I	CCATGG	1 cut(s)	969
BspANI	GGCC	7 cut(s)	364, 469, 493, 550, 584, 628, 954
BspCNI	CTCAG	6 cut(s)	38, 180, 326, 430, 842, 953
BspHI	TCATGA	1 cut(s)	930
BspLI	GGNNCC	2 cut(s)	160, 423
BspMI	ACCTGC	3 cut(s)	526, 529, 920
BspPI	GGATC	5 cut(s)	153, 166, 775, 822, 935
BspQI	GCTCTTC	1 cut(s)	73
BspTNI	GGTCTC	1 cut(s)	171
BsrDI	GCAATG	1 cut(s)	251
BsrI	ACTGG	2 cut(s)	394, 872
BssECI	CCNNGG	5 cut(s)	359, 409, 528, 890, 969
BssMI	GATC	5 cut(s)	158, 560, 767, 814, 927
BssT1I	CCWWGG	4 cut(s)	409, 528, 890, 969
Bst2UI	CCWGG	4 cut(s)	156, 361, 630, 710
Bst4CI	ACNGT	4 cut(s)	80, 265, 515, 589
Bst6I	CTCTTC	1 cut(s)	73
BstC8I	GCNNGC	1 cut(s)	806
BstDEI	CTNAG	8 cut(s)	25, 140, 181, 188, 313, 417, 829, 940
BstDSI	CCRYGG	1 cut(s)	969
BstENI	CCTNNNNNAGG	1 cut(s)	916
BstF5I	GGATG	5 cut(s)	235, 310, 664, 876, 927
BstHHI	GCGC	1 cut(s)	535
BstKTI	GATC	5 cut(s)	161, 563, 770, 817, 930
BstMAI	GTCTC	5 cut(s)	94, 171, 171, 202, 595
BstMBI	GATC	5 cut(s)	158, 560, 767, 814, 927
BstMWI	GCNNNNNNNGC	3 cut(s)	466, 530, 965
BstNI	CCWGG	4 cut(s)	156, 361, 630, 710
BstSCI	CCNGG	5 cut(s)	154, 161, 359, 628, 708
BstSFI	CTRYAG	1 cut(s)	753
BstSLI	GKGCMC	1 cut(s)	520
BstV1I	GCAGC	1 cut(s)	463
BstX2I	RGATCY	3 cut(s)	158, 767, 814
BstXI	CCANNNNNNTGG	1 cut(s)	101
BstYI	RGATCY	3 cut(s)	158, 767, 814
BsuRI	GGCC	7 cut(s)	364, 469, 493, 550, 584, 628, 954
BtgI	CCRYGG	1 cut(s)	969
BtsCI	GGATG	5 cut(s)	235, 310, 664, 876, 927
BtsIMutI	CAGTG	3 cut(s)	201, 520, 585
BveI	ACCTGC	3 cut(s)	526, 529, 920
Cac8I	GCNNGC	1 cut(s)	806
CaiI	CAGNNNCTG	1 cut(s)	629
CciI	TCATGA	1 cut(s)	930
CfoI	GCGC	1 cut(s)	535
Cfr13I	GGNCC	1 cut(s)	626
Csp6I	GTAC	2 cut(s)	398, 507
CspCI	CAANNNNNGTGG	4 cut(s)	190, 225, 582, 617
CviAII	CATG	8 cut(s)	49, 95, 473, 655, 773, 824, 931, 970
CviQI	GTAC	2 cut(s)	398, 507
DdeI	CTNAG	8 cut(s)	25, 140, 181, 188, 313, 417, 829, 940
DpnI	GATC	5 cut(s)	160, 562, 769, 816, 929
DpnII	GATC	5 cut(s)	158, 560, 767, 814, 927
DraI	TTTAAA	1 cut(s)	243
EaeI	YGGCCR	2 cut(s)	548, 582
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
Ecl136II	GAGCTC	1 cut(s)	779
Eco130I	CCWWGG	4 cut(s)	409, 528, 890, 969
Eco147I	AGGCCT	2 cut(s)	364, 469
Eco24I	GRGCYC	2 cut(s)	426, 781
Eco31I	GGTCTC	1 cut(s)	171
Eco53kI	GAGCTC	1 cut(s)	779
Eco57I	CTGAAG	3 cut(s)	54, 146, 830
EcoICRI	GAGCTC	1 cut(s)	779
EcoNI	CCTNNNNNAGG	1 cut(s)	916
EcoO109I	RGGNCCY	1 cut(s)	626
EcoRII	CCWGG	4 cut(s)	154, 359, 628, 708
EcoT14I	CCWWGG	4 cut(s)	409, 528, 890, 969
EcoT38I	GRGCYC	2 cut(s)	426, 781
ErhI	CCWWGG	4 cut(s)	409, 528, 890, 969
FaeI	CATG	8 cut(s)	52, 98, 476, 658, 776, 827, 934, 973
FaqI	GGGAC	2 cut(s)	427, 872
FatI	CATG	8 cut(s)	48, 94, 472, 654, 772, 823, 930, 969
FblI	GTMKAC	2 cut(s)	75, 115
Fnu4HI	GCNGC	1 cut(s)	477
FokI	GGATG	5 cut(s)	222, 317, 671, 883, 934
FriOI	GRGCYC	2 cut(s)	426, 781
Fsp4HI	GCNGC	1 cut(s)	477
FspBI	CTAG	4 cut(s)	194, 489, 504, 994
GlaI	GCGC	1 cut(s)	534
GluI	GCNGC	1 cut(s)	477
HaeIII	GGCC	7 cut(s)	364, 469, 493, 550, 584, 628, 954
HapII	CCGG	1 cut(s)	163
HhaI	GCGC	1 cut(s)	535
Hin1II	CATG	8 cut(s)	52, 98, 476, 658, 776, 827, 934, 973
Hin6I	GCGC	1 cut(s)	533
HinP1I	GCGC	1 cut(s)	533
HinfI	GANTC	2 cut(s)	248, 415
HpaII	CCGG	1 cut(s)	163
HphI	GGTGA	3 cut(s)	835, 875, 893
Hpy166II	GTNNAC	3 cut(s)	76, 116, 518
Hpy188I	TCNGA	6 cut(s)	28, 61, 295, 316, 832, 943
Hpy188III	TCNNGA	4 cut(s)	170, 419, 728, 931
Hpy8I	GTNNAC	3 cut(s)	76, 116, 518
HpyAV	CCTTC	5 cut(s)	28, 121, 375, 805, 830
HpyCH4III	ACNGT	4 cut(s)	80, 265, 515, 589
HpyCH4IV	ACGT	1 cut(s)	600
HpyCH4V	TGCA	6 cut(s)	256, 460, 518, 704, 915, 981
HpyF10VI	GCNNNNNNNGC	3 cut(s)	466, 530, 965
HpyF3I	CTNAG	8 cut(s)	25, 140, 181, 188, 313, 417, 829, 940
HpySE526I	ACGT	1 cut(s)	600
Hsp92II	CATG	8 cut(s)	52, 98, 476, 658, 776, 827, 934, 973
HspAI	GCGC	1 cut(s)	533
Kzo9I	GATC	5 cut(s)	158, 560, 767, 814, 927
LguI	GCTCTTC	1 cut(s)	73
LmnI	GCTCC	5 cut(s)	37, 421, 670, 776, 964
Lsp1109I	GCAGC	1 cut(s)	463
LweI	GCATC	3 cut(s)	286, 861, 934
MaeI	CTAG	4 cut(s)	194, 489, 504, 994
MaeII	ACGT	1 cut(s)	600
MaeIII	GTNAC	1 cut(s)	863
MalI	GATC	5 cut(s)	160, 562, 769, 816, 929
MboI	GATC	5 cut(s)	158, 560, 767, 814, 927
MboII	GAAGA	3 cut(s)	60, 583, 711
MflI	RGATCY	3 cut(s)	158, 767, 814
MhlI	GDGCHC	5 cut(s)	426, 520, 637, 667, 781
MlsI	TGGCCA	2 cut(s)	550, 584
MluCI	AATT	1 cut(s)	43
MluNI	TGGCCA	2 cut(s)	550, 584
MlyI	GAGTC	1 cut(s)	409
Mox20I	TGGCCA	2 cut(s)	550, 584
MscI	TGGCCA	2 cut(s)	550, 584
MseI	TTAA	1 cut(s)	242
MslI	CAYNNNNRTG	1 cut(s)	99
Msp20I	TGGCCA	2 cut(s)	550, 584
MspI	CCGG	1 cut(s)	163
MspR9I	CCNGG	5 cut(s)	156, 163, 361, 630, 710
MvaI	CCWGG	4 cut(s)	156, 361, 630, 710
MwoI	GCNNNNNNNGC	3 cut(s)	466, 530, 965
NciI	CCSGG	1 cut(s)	163
NcoI	CCATGG	1 cut(s)	969
NdeII	GATC	5 cut(s)	158, 560, 767, 814, 927
NlaIII	CATG	8 cut(s)	52, 98, 476, 658, 776, 827, 934, 973
NlaIV	GGNNCC	2 cut(s)	160, 423
NmuCI	GTSAC	1 cut(s)	863
PagI	TCATGA	1 cut(s)	930
PaqCI	CACCTGC	1 cut(s)	529
PceI	AGGCCT	2 cut(s)	364, 469
PciSI	GCTCTTC	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	248
PfoI	TCCNGGA	1 cut(s)	154
PkrI	GCNGC	1 cut(s)	478
PleI	GAGTC	1 cut(s)	409
PpsI	GAGTC	1 cut(s)	409
Psp124BI	GAGCTC	1 cut(s)	781
Psp6I	CCWGG	4 cut(s)	154, 359, 628, 708
PspGI	CCWGG	4 cut(s)	154, 359, 628, 708
PspN4I	GGNNCC	2 cut(s)	160, 423
PspPI	GGNCC	1 cut(s)	626
PstNI	CAGNNNCTG	1 cut(s)	629
PsuI	RGATCY	3 cut(s)	158, 767, 814
RsaI	GTAC	2 cut(s)	399, 508
RsaNI	GTAC	2 cut(s)	398, 507
RseI	CAYNNNNRTG	1 cut(s)	99
SacI	GAGCTC	1 cut(s)	781
SapI	GCTCTTC	1 cut(s)	73
SaqAI	TTAA	1 cut(s)	242
SatI	GCNGC	1 cut(s)	477
Sau3AI	GATC	5 cut(s)	158, 560, 767, 814, 927
Sau96I	GGNCC	1 cut(s)	626
ScaI	AGTACT	1 cut(s)	508
SchI	GAGTC	1 cut(s)	409
ScrFI	CCNGG	5 cut(s)	156, 163, 361, 630, 710
SduI	GDGCHC	5 cut(s)	426, 520, 637, 667, 781
SfaNI	GCATC	3 cut(s)	286, 861, 934
SfcI	CTRYAG	1 cut(s)	753
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
Sse9I	AATT	1 cut(s)	43
SseBI	AGGCCT	2 cut(s)	364, 469
SspMI	CTAG	4 cut(s)	194, 489, 504, 994
SstI	GAGCTC	1 cut(s)	781
StuI	AGGCCT	2 cut(s)	364, 469
StyD4I	CCNGG	5 cut(s)	154, 161, 359, 628, 708
StyI	CCWWGG	4 cut(s)	409, 528, 890, 969
TaaI	ACNGT	4 cut(s)	80, 265, 515, 589
TaiI	ACGT	1 cut(s)	603
TasI	AATT	1 cut(s)	43
TatI	WGTACW	2 cut(s)	397, 506
TfiI	GAWTC	1 cut(s)	248
Tru1I	TTAA	1 cut(s)	242
Tru9I	TTAA	1 cut(s)	242
TscAI	CASTG	3 cut(s)	208, 520, 592
TseFI	GTSAC	1 cut(s)	863
TseI	GCWGC	1 cut(s)	476
Tsp45I	GTSAC	1 cut(s)	863
TspDTI	ATGAA	4 cut(s)	240, 446, 812, 947
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	3 cut(s)	208, 520, 592
VneI	GTGCAC	1 cut(s)	516
XagI	CCTNNNNNAGG	1 cut(s)	916
XmiI	GTMKAC	2 cut(s)	75, 115
XspI	CTAG	4 cut(s)	194, 489, 504, 994
ZrmI	AGTACT	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.