Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007233

Physical Location & Seq

Genomic Coordinates Forward (+)

20315390 .. 20317401

Gene Structure 2012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G49940.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGCAATTGCTGACGCTAAATCCGGCGGCCATTTCCAGGACGCCGCCGCAAGCCATAGACCCTTCCTCATCCTCGAGTCTTCTTCTTCCTTTTCCTCAGATTTTGAGCTCCCAACGCGCTCTTGGTCTTGTAGCTAGGCCTTGTAATCCACTTCGACGAGGATTATCTAGGTTTTTATCAAGTCGACAGCTTTTCCGACGATCCAAAGTTGTCAAGGCAGTAGCAACCCCAGACCCCATCTTGGAAGTACCTTTAACTGAGGAAAATGTAGAAAGCGTTTTGGATGAAATCCGACCTTACCTTATGTCTGATGGTGGTAATGTGGCATTACATGAGATCGATGGAAATATTGTGCGGGTTAAGCTGCAGGGAGCATGCGGATCATGTCCAAGTTCTACTATGACAATGAAGATGGGTATTGAGCGTCGTCTAATGGAAAAGATCCCTGAAATAGTGGCTGTAGAAGCTCTTCCAGATGAAGAGACTGGCCTTGAACTGAATGAGGAAAACATTGAAAAGGTGCTGGAAGAAATCAGGCCTTACTTAATCGGAACAGCAGATGGATCGCTTGATCTAGTGGAGATTGAAGATCCAATCGTGAAGATAAGAATCACAGGACCTGCAGCTGGAGTCATGACAGTTCGTGTAGCAGTCACTCAGAAACTAAGAGAGAAAATTCCATCAATCGCAGCTGTTCAACTTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006790 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016020 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NifU

Protein Analysis

235

Amino Acids

25.62

Weight (kDa)

5.29

Isoelectric Point (pI)

66.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NifU	PF01106	90 - 155	4.2e-29	NifU-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49940 AT5G49940
fragaria_vesca	FvH4_7g01380 FvH4_7g01380 FvH4_7g01380 FvH4_7g01380 FvH4_7g01380
malus_domestica	MD08G1240400.v1.1 MD15G1433600.v1.1
prunus_persica	Prupe.1G577000_v2.0.a1
pyrus_communis	pycom08g20850 pycom15g38280
rosa_chinensis	RchiOBHm_Chr1g0317081
rosa_laevigata	RLG00000030628
rosa_multiflora	Rmu_co8218640.1_g000001 Rmu_sc0003689.1_g000019
rosa_roxburghii	Rroxscaffold_4G00330680
rosa_rugosa	Rorug01G0014300 Rorug01G0014400 Rorug01G0014500 Rorug01G0014600
rosa_samantha	Rh1AG025400 Rh1CG023800 Rh1DG022600
rosa_wichuraiana	Rw1G001770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	628
AccI	GTMKAC	1 cut(s)	184
AccII	CGCG	1 cut(s)	117
AciI	CCGC	5 cut(s)	26, 44, 47, 355, 378
AclWI	GGATC	5 cut(s)	195, 388, 436, 571, 584
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	1 cut(s)	675
AcyI	GRCGYC	1 cut(s)	41
AfaI	GTAC	1 cut(s)	249
AfiI	CCNNNNNNNGG	3 cut(s)	36, 241, 626
AgsI	TTSAA	4 cut(s)	494, 515, 587, 698
AjnI	CCWGG	1 cut(s)	35
AluBI	AGCT	7 cut(s)	108, 134, 190, 364, 467, 626, 692
AluI	AGCT	7 cut(s)	108, 134, 190, 364, 467, 626, 692
Alw21I	GWGCWC	1 cut(s)	110
Alw26I	GTCTC	1 cut(s)	476
AlwI	GGATC	5 cut(s)	195, 388, 436, 571, 584
AlwNI	CAGNNNCTG	1 cut(s)	620
Ama87I	CYCGRG	1 cut(s)	73
AoxI	GGCC	4 cut(s)	27, 137, 487, 536
ApeKI	GCWGC	3 cut(s)	364, 623, 689
ApoI	RAATTY	1 cut(s)	675
Asp700I	GAANNNNTTC	1 cut(s)	468
AspLEI	GCGC	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	617
AvaI	CYCGRG	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	617
BanII	GRGCYC	1 cut(s)	110
BarI	GAAGNNNNNNTAC	2 cut(s)	453, 485
BbsI	GAAGAC	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	110
BbvI	GCAGC	3 cut(s)	351, 635, 701
BccI	CCATC	6 cut(s)	245, 305, 335, 406, 554, 688
BcgI	CGANNNNNNTGC	2 cut(s)	546, 580
BciT130I	CCWGG	1 cut(s)	37
BcoDI	GTCTC	1 cut(s)	476
BfaI	CTAG	3 cut(s)	135, 168, 575
BfmI	CTRYAG	3 cut(s)	365, 459, 621
BfuAI	ACCTGC	1 cut(s)	628
BisI	GCNGC	6 cut(s)	27, 44, 47, 365, 624, 690
BlsI	GCNGC	6 cut(s)	28, 45, 48, 366, 625, 691
Bme1390I	CCNGG	1 cut(s)	37
Bme18I	GGWCC	1 cut(s)	617
BmeT110I	CYCGRG	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	617
BmrFI	CCNGG	1 cut(s)	37
BpiI	GAAGAC	1 cut(s)	71
BpmI	CTGGAG	1 cut(s)	648
Bsa29I	ATCGAT	1 cut(s)	339
BsaBI	GATNNNNATC	1 cut(s)	608
BsaHI	GRCGYC	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	3 cut(s)	36, 241, 626
Bse1I	ACTGG	1 cut(s)	490
Bse8I	GATNNNNATC	1 cut(s)	608
BseBI	CCWGG	1 cut(s)	37
BseCI	ATCGAT	1 cut(s)	339
BseGI	GGATG	2 cut(s)	68, 289
BseJI	GATNNNNATC	1 cut(s)	608
BseLI	CCNNNNNNNGG	3 cut(s)	36, 241, 626
BseMII	CTCAG	3 cut(s)	110, 249, 671
BseNI	ACTGG	1 cut(s)	490
BseXI	GCAGC	3 cut(s)	351, 635, 701
Bsh1236I	CGCG	1 cut(s)	117
BshFI	GGCC	4 cut(s)	29, 139, 489, 538
BshVI	ATCGAT	1 cut(s)	339
BsiHKAI	GWGCWC	1 cut(s)	110
BsiHKCI	CYCGRG	1 cut(s)	73
BsiSI	CCGG	1 cut(s)	23
BslI	CCNNNNNNNGG	3 cut(s)	36, 241, 626
BsmAI	GTCTC	1 cut(s)	476
BsnI	GGCC	4 cut(s)	29, 139, 489, 538
BsoBI	CYCGRG	1 cut(s)	73
Bsp1286I	GDGCHC	1 cut(s)	110
Bsp143I	GATC	7 cut(s)	200, 336, 380, 441, 563, 571, 589
BspACI	CCGC	5 cut(s)	26, 44, 47, 355, 378
BspANI	GGCC	4 cut(s)	29, 139, 489, 538
BspCNI	CTCAG	3 cut(s)	109, 250, 670
BspDI	ATCGAT	1 cut(s)	339
BspFNI	CGCG	1 cut(s)	117
BspHI	TCATGA	1 cut(s)	633
BspMAI	CTGCAG	2 cut(s)	369, 625
BspMI	ACCTGC	1 cut(s)	628
BspPI	GGATC	5 cut(s)	195, 388, 436, 571, 584
BspQI	GCTCTTC	1 cut(s)	474
BsrI	ACTGG	1 cut(s)	490
BssMI	GATC	7 cut(s)	200, 336, 380, 441, 563, 571, 589
BssNI	GRCGYC	1 cut(s)	41
Bst2UI	CCWGG	1 cut(s)	37
Bst4CI	ACNGT	1 cut(s)	640
Bst6I	CTCTTC	2 cut(s)	474, 474
BstACI	GRCGYC	1 cut(s)	41
BstC8I	GCNNGC	2 cut(s)	51, 376
BstDEI	CTNAG	4 cut(s)	96, 258, 657, 665
BstF5I	GGATG	2 cut(s)	68, 289
BstFNI	CGCG	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	7 cut(s)	203, 339, 383, 444, 566, 574, 592
BstMAI	GTCTC	1 cut(s)	476
BstMBI	GATC	7 cut(s)	200, 336, 380, 441, 563, 571, 589
BstMWI	GCNNNNNNNGC	3 cut(s)	114, 361, 464
BstNI	CCWGG	1 cut(s)	37
BstNSI	RCATGY	1 cut(s)	378
BstSCI	CCNGG	1 cut(s)	35
BstSFI	CTRYAG	3 cut(s)	365, 459, 621
BstUI	CGCG	1 cut(s)	117
BstV1I	GCAGC	3 cut(s)	351, 635, 701
BstV2I	GAAGAC	1 cut(s)	71
BstX2I	RGATCY	2 cut(s)	441, 589
BstYI	RGATCY	2 cut(s)	441, 589
Bsu15I	ATCGAT	1 cut(s)	339
BsuRI	GGCC	4 cut(s)	29, 139, 489, 538
BsuTUI	ATCGAT	1 cut(s)	339
BtsCI	GGATG	2 cut(s)	68, 289
BveI	ACCTGC	1 cut(s)	628
Cac8I	GCNNGC	2 cut(s)	51, 376
CaiI	CAGNNNCTG	1 cut(s)	620
CciI	TCATGA	1 cut(s)	633
CfoI	GCGC	1 cut(s)	119
Cfr13I	GGNCC	1 cut(s)	617
ClaI	ATCGAT	1 cut(s)	339
CseI	GACGC	3 cut(s)	22, 49, 413
Csp6I	GTAC	1 cut(s)	248
CviAII	CATG	4 cut(s)	332, 375, 384, 634
CviQI	GTAC	1 cut(s)	248
DdeI	CTNAG	4 cut(s)	96, 258, 657, 665
DpnI	GATC	7 cut(s)	202, 338, 382, 443, 565, 573, 591
DpnII	GATC	7 cut(s)	200, 336, 380, 441, 563, 571, 589
EaeI	YGGCCR	1 cut(s)	27
Eam1104I	CTCTTC	2 cut(s)	474, 474
EarI	CTCTTC	2 cut(s)	474, 474
Ecl136II	GAGCTC	1 cut(s)	108
Eco147I	AGGCCT	2 cut(s)	139, 538
Eco24I	GRGCYC	1 cut(s)	110
Eco47I	GGWCC	1 cut(s)	617
Eco53kI	GAGCTC	1 cut(s)	108
Eco88I	CYCGRG	1 cut(s)	73
EcoICRI	GAGCTC	1 cut(s)	108
EcoO109I	RGGNCCY	1 cut(s)	617
EcoRII	CCWGG	1 cut(s)	35
EcoT38I	GRGCYC	1 cut(s)	110
FaeI	CATG	4 cut(s)	335, 378, 387, 637
FaiI	YATR	9 cut(s)	56, 305, 333, 376, 385, 401, 635, 704, 706
FatI	CATG	4 cut(s)	331, 374, 383, 633
FauI	CCCGC	1 cut(s)	348
FblI	GTMKAC	1 cut(s)	184
Fnu4HI	GCNGC	6 cut(s)	27, 44, 47, 365, 624, 690
FokI	GGATG	2 cut(s)	55, 296
FriOI	GRGCYC	1 cut(s)	110
Fsp4HI	GCNGC	6 cut(s)	27, 44, 47, 365, 624, 690
FspBI	CTAG	3 cut(s)	135, 168, 575
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	6 cut(s)	27, 44, 47, 365, 624, 690
GsuI	CTGGAG	1 cut(s)	648
HaeIII	GGCC	4 cut(s)	29, 139, 489, 538
HapII	CCGG	1 cut(s)	23
HgaI	GACGC	3 cut(s)	22, 49, 413
HhaI	GCGC	1 cut(s)	119
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	4 cut(s)	335, 378, 387, 637
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HincII	GTYRAC	1 cut(s)	185
HindII	GTYRAC	1 cut(s)	185
HinfI	GANTC	3 cut(s)	76, 609, 630
HpaII	CCGG	1 cut(s)	23
Hpy166II	GTNNAC	1 cut(s)	185
Hpy188I	TCNGA	6 cut(s)	99, 197, 293, 310, 551, 660
Hpy188III	TCNNGA	3 cut(s)	473, 598, 634
Hpy8I	GTNNAC	1 cut(s)	185
Hpy99I	CGWCG	3 cut(s)	159, 201, 429
HpyAV	CCTTC	1 cut(s)	72
HpyCH4III	ACNGT	1 cut(s)	640
HpyCH4V	TGCA	3 cut(s)	4, 367, 623
HpyF10VI	GCNNNNNNNGC	3 cut(s)	114, 361, 464
HpyF3I	CTNAG	4 cut(s)	96, 258, 657, 665
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	4 cut(s)	335, 378, 387, 637
HspAI	GCGC	1 cut(s)	117
Kzo9I	GATC	7 cut(s)	200, 336, 380, 441, 563, 571, 589
LguI	GCTCTTC	1 cut(s)	474
LmnI	GCTCC	2 cut(s)	113, 371
Lsp1109I	GCAGC	3 cut(s)	351, 635, 701
MaeI	CTAG	3 cut(s)	135, 168, 575
MaeIII	GTNAC	1 cut(s)	652
MalI	GATC	7 cut(s)	202, 338, 382, 443, 565, 573, 591
MboI	GATC	7 cut(s)	200, 336, 380, 441, 563, 571, 589
MboII	GAAGA	9 cut(s)	71, 74, 77, 421, 461, 491, 539, 599, 613
MfeI	CAATTG	1 cut(s)	5
MflI	RGATCY	2 cut(s)	441, 589
MhlI	GDGCHC	1 cut(s)	110
MluCI	AATT	2 cut(s)	5, 675
MlyI	GAGTC	2 cut(s)	85, 639
MmeI	TCCRAC	2 cut(s)	220, 316
MnlI	CCTC	6 cut(s)	76, 82, 105, 152, 253, 496
MroXI	GAANNNNTTC	1 cut(s)	468
MseI	TTAA	3 cut(s)	254, 360, 545
MspA1I	CMGCKG	2 cut(s)	626, 692
MspI	CCGG	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	37
MunI	CAATTG	1 cut(s)	5
MvaI	CCWGG	1 cut(s)	37
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	3 cut(s)	114, 361, 464
NdeII	GATC	7 cut(s)	200, 336, 380, 441, 563, 571, 589
NlaIII	CATG	4 cut(s)	335, 378, 387, 637
NmuCI	GTSAC	1 cut(s)	652
NspI	RCATGY	1 cut(s)	378
PaeI	GCATGC	1 cut(s)	378
PaeR7I	CTCGAG	1 cut(s)	73
PagI	TCATGA	1 cut(s)	633
PceI	AGGCCT	2 cut(s)	139, 538
PciSI	GCTCTTC	1 cut(s)	474
PdmI	GAANNNNTTC	1 cut(s)	468
PfeI	GAWTC	1 cut(s)	609
PfoI	TCCNGGA	1 cut(s)	35
PkrI	GCNGC	6 cut(s)	28, 45, 48, 366, 625, 691
PleI	GAGTC	2 cut(s)	84, 638
PpsI	GAGTC	2 cut(s)	84, 638
PpuMI	RGGWCCY	1 cut(s)	617
Psp124BI	GAGCTC	1 cut(s)	110
Psp5II	RGGWCCY	1 cut(s)	617
Psp6I	CCWGG	1 cut(s)	35
PspGI	CCWGG	1 cut(s)	35
PspPI	GGNCC	1 cut(s)	617
PspPPI	RGGWCCY	1 cut(s)	617
PspXI	VCTCGAGB	1 cut(s)	73
PstI	CTGCAG	2 cut(s)	369, 625
PstNI	CAGNNNCTG	1 cut(s)	620
PsuI	RGATCY	2 cut(s)	441, 589
PvuII	CAGCTG	2 cut(s)	626, 692
RsaI	GTAC	1 cut(s)	249
RsaNI	GTAC	1 cut(s)	248
SacI	GAGCTC	1 cut(s)	110
SalI	GTCGAC	1 cut(s)	183
SapI	GCTCTTC	1 cut(s)	474
SaqAI	TTAA	3 cut(s)	254, 360, 545
SatI	GCNGC	6 cut(s)	27, 44, 47, 365, 624, 690
Sau3AI	GATC	7 cut(s)	200, 336, 380, 441, 563, 571, 589
Sau96I	GGNCC	1 cut(s)	617
SchI	GAGTC	2 cut(s)	85, 639
ScrFI	CCNGG	1 cut(s)	37
SduI	GDGCHC	1 cut(s)	110
SfcI	CTRYAG	3 cut(s)	365, 459, 621
Sfr274I	CTCGAG	1 cut(s)	73
SinI	GGWCC	1 cut(s)	617
SlaI	CTCGAG	1 cut(s)	73
SmlI	CTYRAG	1 cut(s)	73
SmoI	CTYRAG	1 cut(s)	73
SphI	GCATGC	1 cut(s)	378
Sse9I	AATT	2 cut(s)	5, 675
SseBI	AGGCCT	2 cut(s)	139, 538
SsiI	CCGC	5 cut(s)	26, 44, 47, 355, 378
SspI	AATATT	1 cut(s)	349
SspMI	CTAG	3 cut(s)	135, 168, 575
SstI	GAGCTC	1 cut(s)	110
StuI	AGGCCT	2 cut(s)	139, 538
StyD4I	CCNGG	1 cut(s)	35
TaaI	ACNGT	1 cut(s)	640
TaqI	TCGA	4 cut(s)	74, 154, 184, 339
TasI	AATT	2 cut(s)	5, 675
TauI	GCSGC	3 cut(s)	29, 46, 49
TfiI	GAWTC	1 cut(s)	609
Tru1I	TTAA	3 cut(s)	254, 360, 545
Tru9I	TTAA	3 cut(s)	254, 360, 545
TseFI	GTSAC	1 cut(s)	652
TseI	GCWGC	3 cut(s)	364, 623, 689
Tsp45I	GTSAC	1 cut(s)	652
TspDTI	ATGAA	3 cut(s)	300, 422, 492
VpaK11BI	GGWCC	1 cut(s)	617
XapI	RAATTY	1 cut(s)	675
XceI	RCATGY	1 cut(s)	378
XcmI	CCANNNNNNNNNTGG	1 cut(s)	119
XhoI	CTCGAG	1 cut(s)	73
XmiI	GTMKAC	1 cut(s)	184
XmnI	GAANNNNTTC	1 cut(s)	468
XspI	CTAG	3 cut(s)	135, 168, 575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.