Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8218640.1

Orthogroup ID

OG0007233

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 544

Gene Structure 544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8218640.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

atgaacttcacagttgttaaggcggttgctactccaaattcagccgtggaattaccattgactgcagaaaatgtggaaagtgtattagatgaaatccggccatatctcatttctgatggggggaatgtggcattacatgaaattgatggcaatatagtgcggttaaagctacaaggagcatgtggatcgtgtccaagttctgttatgacaatgaaaatgggtattgagcgacgtttaatggaaaaaatccctgaaatagttgctgtggaaccaatagcagatgaagaaacaggccttgagctgaatgaagaaaatatagagaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006790 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016020 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NifU

Protein Analysis

108

Amino Acids

11.74

Weight (kDa)

4.42

Isoelectric Point (pI)

60.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49940 AT5G49940
fragaria_vesca	FvH4_7g01380 FvH4_7g01380 FvH4_7g01380 FvH4_7g01380 FvH4_7g01380
malus_domestica	MD08G1240400.v1.1 MD15G1433600.v1.1
prunus_persica	Prupe.1G577000_v2.0.a1
pyrus_communis	pycom08g20850 pycom15g38280
rosa_chinensis	RchiOBHm_Chr1g0317081
rosa_laevigata	RLG00000030628
rosa_multiflora	Rmu_co8218640.1_g000001 Rmu_sc0003689.1_g000019
rosa_roxburghii	Rroxscaffold_4G00330680
rosa_rugosa	Rorug01G0014300 Rorug01G0014400 Rorug01G0014500 Rorug01G0014600
rosa_samantha	Rh1AG025400 Rh1CG023800 Rh1DG022600
rosa_wichuraiana	Rw1G001770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	23, 160
AclWI	GGATC	1 cut(s)	193
AcoI	YGGCCR	1 cut(s)	98
AcsI	RAATTY	1 cut(s)	37
AluBI	AGCT	2 cut(s)	169, 301
AluI	AGCT	2 cut(s)	169, 301
AlwI	GGATC	1 cut(s)	193
AoxI	GGCC	2 cut(s)	98, 292
ApoI	RAATTY	1 cut(s)	37
BccI	CCATC	2 cut(s)	110, 140
BceAI	ACGGC	1 cut(s)	29
BcgI	CGANNNNNNTGC	2 cut(s)	168, 202
BfmI	CTRYAG	1 cut(s)	63
BmiI	GGNNCC	1 cut(s)	270
BpuEI	CTTGAG	1 cut(s)	317
BsaJI	CCNNGG	1 cut(s)	45
BseDI	CCNNGG	1 cut(s)	45
BshFI	GGCC	2 cut(s)	100, 294
BsiSI	CCGG	1 cut(s)	97
BsnI	GGCC	2 cut(s)	100, 294
Bsp143I	GATC	1 cut(s)	185
BspACI	CCGC	2 cut(s)	23, 160
BspANI	GGCC	2 cut(s)	100, 294
BspLI	GGNNCC	1 cut(s)	270
BspMAI	CTGCAG	1 cut(s)	67
BspPI	GGATC	1 cut(s)	193
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	1 cut(s)	185
Bst4CI	ACNGT	1 cut(s)	13
BstDSI	CCRYGG	1 cut(s)	45
BstKTI	GATC	1 cut(s)	188
BstMBI	GATC	1 cut(s)	185
BstMWI	GCNNNNNNNGC	1 cut(s)	166
BstNSI	RCATGY	1 cut(s)	183
BstSFI	CTRYAG	1 cut(s)	63
BsuRI	GGCC	2 cut(s)	100, 294
BtgI	CCRYGG	1 cut(s)	45
CviAII	CATG	2 cut(s)	137, 180
CviJI	RGCY	5 cut(s)	44, 100, 169, 294, 301
CviKI_1	RGCY	5 cut(s)	44, 100, 169, 294, 301
DpnI	GATC	1 cut(s)	187
DpnII	GATC	1 cut(s)	185
EaeI	YGGCCR	1 cut(s)	98
Eco147I	AGGCCT	1 cut(s)	294
FaeI	CATG	2 cut(s)	140, 183
FaiI	YATR	6 cut(s)	103, 138, 155, 181, 206, 317
FatI	CATG	2 cut(s)	136, 179
HaeIII	GGCC	2 cut(s)	100, 294
HapII	CCGG	1 cut(s)	97
Hin1II	CATG	2 cut(s)	140, 183
HpaII	CCGG	1 cut(s)	97
Hpy188I	TCNGA	1 cut(s)	115
Hpy99I	CGWCG	1 cut(s)	234
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	1 cut(s)	65
HpyF10VI	GCNNNNNNNGC	1 cut(s)	166
HpySE526I	ACGT	1 cut(s)	232
Hsp92II	CATG	2 cut(s)	140, 183
Kzo9I	GATC	1 cut(s)	185
LmnI	GCTCC	1 cut(s)	176
LpnPI	CCDG	3 cut(s)	110, 264, 276
MaeII	ACGT	1 cut(s)	232
MalI	GATC	1 cut(s)	187
MboI	GATC	1 cut(s)	185
MboII	GAAGA	2 cut(s)	296, 320
MluCI	AATT	3 cut(s)	37, 50, 141
MseI	TTAA	3 cut(s)	18, 164, 236
MspI	CCGG	1 cut(s)	97
MwoI	GCNNNNNNNGC	1 cut(s)	166
NdeII	GATC	1 cut(s)	185
NlaIII	CATG	2 cut(s)	140, 183
NlaIV	GGNNCC	1 cut(s)	270
NspI	RCATGY	1 cut(s)	183
PceI	AGGCCT	1 cut(s)	294
PspN4I	GGNNCC	1 cut(s)	270
PstI	CTGCAG	1 cut(s)	67
SaqAI	TTAA	3 cut(s)	18, 164, 236
Sau3AI	GATC	1 cut(s)	185
SetI	ASST	3 cut(s)	171, 235, 303
SfcI	CTRYAG	1 cut(s)	63
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
Sse9I	AATT	3 cut(s)	37, 50, 141
SseBI	AGGCCT	1 cut(s)	294
SsiI	CCGC	2 cut(s)	23, 160
StuI	AGGCCT	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	13
TaiI	ACGT	1 cut(s)	235
TasI	AATT	3 cut(s)	37, 50, 141
Tru1I	TTAA	3 cut(s)	18, 164, 236
Tru9I	TTAA	3 cut(s)	18, 164, 236
TspDTI	ATGAA	6 cut(s)	17, 105, 153, 227, 297, 321
XapI	RAATTY	1 cut(s)	37
XceI	RCATGY	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.