Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0007233

Physical Location & Seq

Genomic Coordinates Forward (+)

64658577 .. 64660816

Gene Structure 2240 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030628

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGAAAGCTATTCTTCAAAATCCACCATCGTACTACATGGCCCAACAAGCACTGCAGCAACCGAGTTGGAGCTTATTATCAGGAGGCTCCCTTGTTTCATTCACTAGAGGGCATAATTTGGCGCGTCAGAGCTCACGGCTTCAATTACCTTCACGGAATCCAGTTGTTAAAGCGGTTGCTACTCCAAATTCAGCCGTGGAATTACCATTGACTGCAGAAAATGTGGAAAGTGTATTAGATGAAATCCGGCCATATCTCATTTCTGATGGGGGGAATGTGGCATTACATGAAATTGATGGCAATATAGTGCGGTTAAAGCTACAAGGAGCATGTGGATCGTGTCCGAGCTCTGTTATGACAATGAAAATGGGTATTGAGCGTCGTTTAATGGAAAAAATCCCTGAAATAGTAGCTGTGGAACCAATAGCAGATGAAGAAACAGGCCTTGAGTTGAATGAAGAAAATATAGAGAAGGTACTTGAAGAAATTAGACCCTACTTAGTAGGGGCAGCAGGTGGATCTCTAGAACTTGTGGCAATCGATGAGCCTATAGTCAAAGTCCGGATCACAGGTCCTGCTGCCGGGGTGATGACTGTTAGAGTTGCTGTCACACAGAAATTGCGTGAGAAAATCCCTACCATCGCAGCAGTTCAATTACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006790 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016020 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NifU

Protein Analysis

221

Amino Acids

23.75

Weight (kDa)

5.37

Isoelectric Point (pI)

61.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NifU	PF01106	75 - 140	2.2e-27	NifU-like domain
NifU	PF01106	156 - 217	4.4e-12	NifU-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49940 AT5G49940
fragaria_vesca	FvH4_7g01380 FvH4_7g01380 FvH4_7g01380 FvH4_7g01380 FvH4_7g01380
malus_domestica	MD08G1240400.v1.1 MD15G1433600.v1.1
prunus_persica	Prupe.1G577000_v2.0.a1
pyrus_communis	pycom08g20850 pycom15g38280
rosa_chinensis	RchiOBHm_Chr1g0317081
rosa_laevigata	RLG00000030628
rosa_multiflora	Rmu_co8218640.1_g000001 Rmu_sc0003689.1_g000019
rosa_roxburghii	Rroxscaffold_4G00330680
rosa_rugosa	Rorug01G0014300 Rorug01G0014400 Rorug01G0014500 Rorug01G0014600
rosa_samantha	Rh1AG025400 Rh1CG023800 Rh1DG022600
rosa_wichuraiana	Rw1G001770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	503
Acc36I	ACCTGC	1 cut(s)	503
AccII	CGCG	1 cut(s)	124
AccIII	TCCGGA	1 cut(s)	561
AciI	CCGC	2 cut(s)	173, 310
AclWI	GGATC	3 cut(s)	343, 526, 572
AcoI	YGGCCR	1 cut(s)	248
AcsI	RAATTY	1 cut(s)	187
AfaI	GTAC	2 cut(s)	32, 477
AfiI	CCNNNNNNNGG	1 cut(s)	581
AgsI	TTSAA	5 cut(s)	17, 143, 454, 482, 653
AluBI	AGCT	6 cut(s)	8, 72, 132, 319, 348, 413
AluI	AGCT	6 cut(s)	8, 72, 132, 319, 348, 413
Alw21I	GWGCWC	2 cut(s)	134, 350
AlwI	GGATC	3 cut(s)	343, 526, 572
AlwNI	CAGNNNCTG	1 cut(s)	575
Aor13HI	TCCGGA	1 cut(s)	561
AoxI	GGCC	3 cut(s)	39, 248, 442
ApeKI	GCWGC	4 cut(s)	55, 509, 578, 644
ApoI	RAATTY	1 cut(s)	187
AspLEI	GCGC	1 cut(s)	124
AspS9I	GGNCC	2 cut(s)	40, 572
AsuC2I	CCSGG	1 cut(s)	583
AsuHPI	GGTGA	1 cut(s)	598
AvaII	GGWCC	1 cut(s)	572
BanII	GRGCYC	2 cut(s)	134, 350
Bbv12I	GWGCWC	2 cut(s)	134, 350
BbvI	GCAGC	4 cut(s)	67, 521, 565, 656
BccI	CCATC	4 cut(s)	34, 260, 290, 647
BceAI	ACGGC	2 cut(s)	152, 179
BcgI	CGANNNNNNTGC	2 cut(s)	318, 352
BcnI	CCSGG	1 cut(s)	583
BfaI	CTAG	2 cut(s)	105, 524
BfmI	CTRYAG	3 cut(s)	53, 213, 549
BfuAI	ACCTGC	1 cut(s)	503
BisI	GCNGC	4 cut(s)	56, 510, 579, 645
BlsI	GCNGC	4 cut(s)	57, 511, 580, 646
Bme1390I	CCNGG	1 cut(s)	583
Bme18I	GGWCC	1 cut(s)	572
BmgT120I	GGNCC	2 cut(s)	40, 572
BmiI	GGNNCC	2 cut(s)	88, 420
BmrFI	CCNGG	1 cut(s)	583
BpuEI	CTTGAG	1 cut(s)	467
BpuMI	CCSGG	1 cut(s)	583
Bsa29I	ATCGAT	1 cut(s)	540
BsaJI	CCNNGG	2 cut(s)	195, 582
BsaWI	WCCGGW	1 cut(s)	561
Bsc4I	CCNNNNNNNGG	1 cut(s)	581
Bse1I	ACTGG	1 cut(s)	161
BseAI	TCCGGA	1 cut(s)	561
BseCI	ATCGAT	1 cut(s)	540
BseDI	CCNNGG	2 cut(s)	195, 582
BseLI	CCNNNNNNNGG	1 cut(s)	581
BseNI	ACTGG	1 cut(s)	161
BseXI	GCAGC	4 cut(s)	67, 521, 565, 656
Bsh1236I	CGCG	1 cut(s)	124
BshFI	GGCC	3 cut(s)	41, 250, 444
BshVI	ATCGAT	1 cut(s)	540
BsiHKAI	GWGCWC	2 cut(s)	134, 350
BsiSI	CCGG	3 cut(s)	247, 562, 582
BslI	CCNNNNNNNGG	1 cut(s)	581
BsnI	GGCC	3 cut(s)	41, 250, 444
Bsp1286I	GDGCHC	2 cut(s)	134, 350
Bsp13I	TCCGGA	1 cut(s)	561
Bsp143I	GATC	3 cut(s)	335, 518, 564
BspACI	CCGC	2 cut(s)	173, 310
BspANI	GGCC	3 cut(s)	41, 250, 444
BspDI	ATCGAT	1 cut(s)	540
BspEI	TCCGGA	1 cut(s)	561
BspFNI	CGCG	1 cut(s)	124
BspLI	GGNNCC	2 cut(s)	88, 420
BspMAI	CTGCAG	2 cut(s)	57, 217
BspMI	ACCTGC	1 cut(s)	503
BspPI	GGATC	3 cut(s)	343, 526, 572
BsrI	ACTGG	1 cut(s)	161
BssECI	CCNNGG	2 cut(s)	195, 582
BssMI	GATC	3 cut(s)	335, 518, 564
Bst4CI	ACNGT	2 cut(s)	595, 660
BstDEI	CTNAG	1 cut(s)	499
BstDSI	CCRYGG	1 cut(s)	195
BstFNI	CGCG	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	124
BstKTI	GATC	3 cut(s)	338, 521, 567
BstMBI	GATC	3 cut(s)	335, 518, 564
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 316
BstNSI	RCATGY	1 cut(s)	333
BstSCI	CCNGG	1 cut(s)	581
BstSFI	CTRYAG	3 cut(s)	53, 213, 549
BstUI	CGCG	1 cut(s)	124
BstV1I	GCAGC	4 cut(s)	67, 521, 565, 656
BstX2I	RGATCY	1 cut(s)	518
BstYI	RGATCY	1 cut(s)	518
Bsu15I	ATCGAT	1 cut(s)	540
BsuRI	GGCC	3 cut(s)	41, 250, 444
BsuTUI	ATCGAT	1 cut(s)	540
BtgI	CCRYGG	1 cut(s)	195
BtgZI	GCGATG	1 cut(s)	625
BtsI	GCAGTG	1 cut(s)	50
BtsIMutI	CAGTG	1 cut(s)	50
BveI	ACCTGC	1 cut(s)	503
CaiI	CAGNNNCTG	1 cut(s)	575
CfoI	GCGC	1 cut(s)	124
Cfr13I	GGNCC	2 cut(s)	40, 572
ClaI	ATCGAT	1 cut(s)	540
CseI	GACGC	2 cut(s)	113, 368
Csp6I	GTAC	2 cut(s)	31, 476
CviAII	CATG	3 cut(s)	37, 287, 330
CviQI	GTAC	2 cut(s)	31, 476
DdeI	CTNAG	1 cut(s)	499
DpnI	GATC	3 cut(s)	337, 520, 566
DpnII	GATC	3 cut(s)	335, 518, 564
EaeI	YGGCCR	1 cut(s)	248
Ecl136II	GAGCTC	2 cut(s)	132, 348
Eco147I	AGGCCT	1 cut(s)	444
Eco24I	GRGCYC	2 cut(s)	134, 350
Eco47I	GGWCC	1 cut(s)	572
Eco53kI	GAGCTC	2 cut(s)	132, 348
EcoICRI	GAGCTC	2 cut(s)	132, 348
EcoO109I	RGGNCCY	1 cut(s)	572
EcoT38I	GRGCYC	2 cut(s)	134, 350
FaeI	CATG	3 cut(s)	40, 290, 333
FaiI	YATR	9 cut(s)	38, 114, 253, 288, 305, 331, 356, 467, 551
FalI	AAGNNNNNCTT	1 cut(s)	29
FatI	CATG	3 cut(s)	36, 286, 329
Fnu4HI	GCNGC	4 cut(s)	56, 510, 579, 645
FriOI	GRGCYC	2 cut(s)	134, 350
Fsp4HI	GCNGC	4 cut(s)	56, 510, 579, 645
FspBI	CTAG	2 cut(s)	105, 524
GlaI	GCGC	1 cut(s)	123
GluI	GCNGC	4 cut(s)	56, 510, 579, 645
HaeIII	GGCC	3 cut(s)	41, 250, 444
HapII	CCGG	3 cut(s)	247, 562, 582
HgaI	GACGC	2 cut(s)	113, 368
HhaI	GCGC	1 cut(s)	124
Hin1II	CATG	3 cut(s)	40, 290, 333
Hin6I	GCGC	1 cut(s)	122
HinP1I	GCGC	1 cut(s)	122
HinfI	GANTC	1 cut(s)	157
HpaII	CCGG	3 cut(s)	247, 562, 582
HphI	GGTGA	1 cut(s)	598
Hpy188I	TCNGA	3 cut(s)	129, 265, 345
Hpy188III	TCNNGA	3 cut(s)	81, 524, 562
Hpy99I	CGWCG	1 cut(s)	384
HpyAV	CCTTC	2 cut(s)	159, 466
HpyCH4III	ACNGT	2 cut(s)	595, 660
HpyCH4V	TGCA	2 cut(s)	55, 215
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 316
HpyF3I	CTNAG	1 cut(s)	499
Hsp92II	CATG	3 cut(s)	40, 290, 333
HspAI	GCGC	1 cut(s)	122
Kpn2I	TCCGGA	1 cut(s)	561
Kzo9I	GATC	3 cut(s)	335, 518, 564
LmnI	GCTCC	3 cut(s)	69, 92, 326
Lsp1109I	GCAGC	4 cut(s)	67, 521, 565, 656
MaeI	CTAG	2 cut(s)	105, 524
MaeIII	GTNAC	1 cut(s)	607
MalI	GATC	3 cut(s)	337, 520, 566
MboI	GATC	3 cut(s)	335, 518, 564
MboII	GAAGA	4 cut(s)	5, 446, 470, 494
MflI	RGATCY	1 cut(s)	518
MhlI	GDGCHC	2 cut(s)	134, 350
MluCI	AATT	8 cut(s)	115, 143, 187, 200, 291, 486, 617, 653
MmeI	TCCRAC	1 cut(s)	47
MnlI	CCTC	2 cut(s)	77, 101
MroI	TCCGGA	1 cut(s)	561
MseI	TTAA	3 cut(s)	168, 314, 386
MspI	CCGG	3 cut(s)	247, 562, 582
MspR9I	CCNGG	1 cut(s)	583
MvnI	CGCG	1 cut(s)	124
MwoI	GCNNNNNNNGC	2 cut(s)	47, 316
NciI	CCSGG	1 cut(s)	583
NdeII	GATC	3 cut(s)	335, 518, 564
NlaIII	CATG	3 cut(s)	40, 290, 333
NlaIV	GGNNCC	2 cut(s)	88, 420
NmuCI	GTSAC	1 cut(s)	607
NspI	RCATGY	1 cut(s)	333
PaqCI	CACCTGC	1 cut(s)	503
PceI	AGGCCT	1 cut(s)	444
PfeI	GAWTC	1 cut(s)	157
PkrI	GCNGC	4 cut(s)	57, 511, 580, 646
PpuMI	RGGWCCY	1 cut(s)	572
Psp124BI	GAGCTC	2 cut(s)	134, 350
Psp5II	RGGWCCY	1 cut(s)	572
PspN4I	GGNNCC	2 cut(s)	88, 420
PspPI	GGNCC	2 cut(s)	40, 572
PspPPI	RGGWCCY	1 cut(s)	572
PstI	CTGCAG	2 cut(s)	57, 217
PstNI	CAGNNNCTG	1 cut(s)	575
PsuI	RGATCY	1 cut(s)	518
RsaI	GTAC	2 cut(s)	32, 477
RsaNI	GTAC	2 cut(s)	31, 476
SacI	GAGCTC	2 cut(s)	134, 350
SaqAI	TTAA	3 cut(s)	168, 314, 386
SatI	GCNGC	4 cut(s)	56, 510, 579, 645
Sau3AI	GATC	3 cut(s)	335, 518, 564
Sau96I	GGNCC	2 cut(s)	40, 572
ScrFI	CCNGG	1 cut(s)	583
SduI	GDGCHC	2 cut(s)	134, 350
SfcI	CTRYAG	3 cut(s)	53, 213, 549
SinI	GGWCC	1 cut(s)	572
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	8 cut(s)	115, 143, 187, 200, 291, 486, 617, 653
SseBI	AGGCCT	1 cut(s)	444
SsiI	CCGC	2 cut(s)	173, 310
SspMI	CTAG	2 cut(s)	105, 524
SstI	GAGCTC	2 cut(s)	134, 350
StuI	AGGCCT	1 cut(s)	444
StyD4I	CCNGG	1 cut(s)	581
TaaI	ACNGT	2 cut(s)	595, 660
TaqI	TCGA	1 cut(s)	540
TasI	AATT	8 cut(s)	115, 143, 187, 200, 291, 486, 617, 653
TfiI	GAWTC	1 cut(s)	157
Tru1I	TTAA	3 cut(s)	168, 314, 386
Tru9I	TTAA	3 cut(s)	168, 314, 386
TscAI	CASTG	1 cut(s)	57
TseFI	GTSAC	1 cut(s)	607
TseI	GCWGC	4 cut(s)	55, 509, 578, 644
Tsp45I	GTSAC	1 cut(s)	607
TspDTI	ATGAA	7 cut(s)	17, 87, 255, 303, 377, 447, 471
TspGWI	ACGGA	1 cut(s)	169
TspRI	CASTG	1 cut(s)	57
VpaK11BI	GGWCC	1 cut(s)	572
XapI	RAATTY	1 cut(s)	187
XbaI	TCTAGA	1 cut(s)	523
XceI	RCATGY	1 cut(s)	333
XspI	CTAG	2 cut(s)	105, 524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.