Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007233

Physical Location & Seq

Genomic Coordinates Reverse (-)

2487795 .. 2488566

Gene Structure 772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0014300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGTGGCAGTAACAATGACAACGACTACGGCCAATACGGAGGAGCCGATTCTGTCGAGGCTGGACCGCCTGGACATTATGCTTCGGCAGCTAGAGGAAATCAATGGGTGCAATCCCATCCATCAATCCTCACACTCGGCCAAGAGCTCTTGCGAATCCACGCCGTCCAGTGGAACCCTAACTAGTGATTACGCACAGGTGTCGTCGACGTCGTCCGCCGACTACTTCTCTCCCAAGAGCCTGGAGAAGCACTGCCGTCCGATTCAGAACGTGATGATGGAGACGGACGCCAAGGGGACGCTGATCGAGAGGCTCGATCATGTAGAGGATCGTGTTCTGAAGCTGTGTATGCAGTTGGAGGAAGAACTGGAGGCCGCTGAGAGGAAGAGAGAGGATAGAGATCGGGTCAAGGTTGAGACAGAGGTGAAGGTCGTCGAGGAGAAGAGGACTCCTCACAAGAAGAAGGGGTTCAAGCAACTTGTAAAACAGTGTGTTACAGGGAAAACAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006790 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016020 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NifU

Protein Analysis

170

Amino Acids

19.22

Weight (kDa)

6.23

Isoelectric Point (pI)

47.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49940 AT5G49940
fragaria_vesca	FvH4_7g01380 FvH4_7g01380 FvH4_7g01380 FvH4_7g01380 FvH4_7g01380
malus_domestica	MD08G1240400.v1.1 MD15G1433600.v1.1
prunus_persica	Prupe.1G577000_v2.0.a1
pyrus_communis	pycom08g20850 pycom15g38280
rosa_chinensis	RchiOBHm_Chr1g0317081
rosa_laevigata	RLG00000030628
rosa_multiflora	Rmu_co8218640.1_g000001 Rmu_sc0003689.1_g000019
rosa_roxburghii	Rroxscaffold_4G00330680
rosa_rugosa	Rorug01G0014300 Rorug01G0014400 Rorug01G0014500 Rorug01G0014600
rosa_samantha	Rh1AG025400 Rh1CG023800 Rh1DG022600
rosa_wichuraiana	Rw1G001770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	212
AccI	GTMKAC	1 cut(s)	206
AciI	CCGC	3 cut(s)	67, 216, 375
AclWI	GGATC	1 cut(s)	336
AcoI	YGGCCR	2 cut(s)	30, 138
AcuI	CTGAAG	1 cut(s)	359
AcyI	GRCGYC	2 cut(s)	209, 288
AfiI	CCNNNNNNNGG	2 cut(s)	170, 381
AgsI	TTSAA	1 cut(s)	472
AhlI	ACTAGT	1 cut(s)	182
AjnI	CCWGG	2 cut(s)	69, 240
AluBI	AGCT	3 cut(s)	91, 147, 343
AluI	AGCT	3 cut(s)	91, 147, 343
Alw21I	GWGCWC	1 cut(s)	149
Alw26I	GTCTC	2 cut(s)	275, 410
AlwI	GGATC	1 cut(s)	336
AoxI	GGCC	3 cut(s)	30, 138, 372
ApeKI	GCWGC	1 cut(s)	88
Asp700I	GAANNNNTTC	1 cut(s)	467
AspS9I	GGNCC	1 cut(s)	64
AsuHPI	GGTGA	1 cut(s)	436
AvaII	GGWCC	1 cut(s)	64
BanII	GRGCYC	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	149
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	3 cut(s)	125, 129, 271
BceAI	ACGGC	3 cut(s)	45, 148, 240
BcgI	CGANNNNNNTGC	2 cut(s)	183, 217
BciT130I	CCWGG	2 cut(s)	71, 242
BcoDI	GTCTC	2 cut(s)	275, 410
BcuI	ACTAGT	1 cut(s)	182
BfaI	CTAG	2 cut(s)	92, 183
BisI	GCNGC	2 cut(s)	89, 375
BlsI	GCNGC	2 cut(s)	90, 376
Bme1390I	CCNGG	2 cut(s)	71, 242
Bme18I	GGWCC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	2 cut(s)	45, 175
BmrFI	CCNGG	2 cut(s)	71, 242
BplI	GAGNNNNNCTC	2 cut(s)	436, 468
BpmI	CTGGAG	2 cut(s)	263, 389
BsaBI	GATNNNNATC	1 cut(s)	399
BsaHI	GRCGYC	2 cut(s)	209, 288
BsaJI	CCNNGG	1 cut(s)	291
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 381
Bse1I	ACTGG	2 cut(s)	168, 372
Bse8I	GATNNNNATC	1 cut(s)	399
BseBI	CCWGG	2 cut(s)	71, 242
BseDI	CCNNGG	1 cut(s)	291
BseGI	GGATG	1 cut(s)	117
BseJI	GATNNNNATC	1 cut(s)	399
BseLI	CCNNNNNNNGG	2 cut(s)	170, 381
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	2 cut(s)	168, 372
BseRI	GAGGAG	3 cut(s)	56, 441, 452
BseXI	GCAGC	1 cut(s)	100
BshFI	GGCC	3 cut(s)	32, 140, 374
BsiHKAI	GWGCWC	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	310
BslI	CCNNNNNNNGG	2 cut(s)	170, 381
BsmAI	GTCTC	2 cut(s)	275, 410
BsmBI	CGTCTC	1 cut(s)	275
BsmFI	GGGAC	1 cut(s)	310
BsnI	GGCC	3 cut(s)	32, 140, 374
Bsp1286I	GDGCHC	1 cut(s)	149
Bsp143I	GATC	4 cut(s)	303, 316, 328, 400
BspACI	CCGC	3 cut(s)	67, 216, 375
BspANI	GGCC	3 cut(s)	32, 140, 374
BspCNI	CTCAG	1 cut(s)	370
BspLI	GGNNCC	2 cut(s)	45, 175
BspPI	GGATC	1 cut(s)	336
BsrI	ACTGG	2 cut(s)	168, 372
BssECI	CCNNGG	1 cut(s)	291
BssMI	GATC	4 cut(s)	303, 316, 328, 400
BssNI	GRCGYC	2 cut(s)	209, 288
BssT1I	CCWWGG	1 cut(s)	291
Bst2UI	CCWGG	2 cut(s)	71, 242
Bst4CI	ACNGT	1 cut(s)	489
Bst6I	CTCTTC	2 cut(s)	380, 437
BstACI	GRCGYC	2 cut(s)	209, 288
BstDEI	CTNAG	1 cut(s)	378
BstF5I	GGATG	1 cut(s)	117
BstKTI	GATC	4 cut(s)	306, 319, 331, 403
BstMAI	GTCTC	2 cut(s)	275, 410
BstMBI	GATC	4 cut(s)	303, 316, 328, 400
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 349
BstNI	CCWGG	2 cut(s)	71, 242
BstSCI	CCNGG	2 cut(s)	69, 240
BstV1I	GCAGC	1 cut(s)	100
BstXI	CCANNNNNNTGG	1 cut(s)	241
BsuRI	GGCC	3 cut(s)	32, 140, 374
BtsCI	GGATG	1 cut(s)	117
BtsI	GCAGTG	1 cut(s)	250
BtsIMutI	CAGTG	3 cut(s)	175, 250, 494
Cfr13I	GGNCC	1 cut(s)	64
CseI	GACGC	2 cut(s)	296, 307
CviAII	CATG	1 cut(s)	320
DdeI	CTNAG	1 cut(s)	378
DpnI	GATC	4 cut(s)	305, 318, 330, 402
DpnII	GATC	4 cut(s)	303, 316, 328, 400
EaeI	YGGCCR	2 cut(s)	30, 138
Eam1104I	CTCTTC	2 cut(s)	380, 437
EarI	CTCTTC	2 cut(s)	380, 437
EciI	GGCGGA	1 cut(s)	205
Ecl136II	GAGCTC	1 cut(s)	147
Eco130I	CCWWGG	1 cut(s)	291
Eco24I	GRGCYC	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	64
Eco53kI	GAGCTC	1 cut(s)	147
Eco57I	CTGAAG	1 cut(s)	359
EcoICRI	GAGCTC	1 cut(s)	147
EcoRII	CCWGG	2 cut(s)	69, 240
EcoT14I	CCWWGG	1 cut(s)	291
EcoT38I	GRGCYC	1 cut(s)	149
ErhI	CCWWGG	1 cut(s)	291
Esp3I	CGTCTC	1 cut(s)	275
FaeI	CATG	1 cut(s)	323
FaiI	YATR	3 cut(s)	80, 321, 350
FaqI	GGGAC	1 cut(s)	310
FatI	CATG	1 cut(s)	319
FblI	GTMKAC	1 cut(s)	206
Fnu4HI	GCNGC	2 cut(s)	89, 375
FokI	GGATG	1 cut(s)	104
FriOI	GRGCYC	1 cut(s)	149
Fsp4HI	GCNGC	2 cut(s)	89, 375
FspBI	CTAG	2 cut(s)	92, 183
GluI	GCNGC	2 cut(s)	89, 375
GsuI	CTGGAG	2 cut(s)	263, 389
HaeIII	GGCC	3 cut(s)	32, 140, 374
HgaI	GACGC	2 cut(s)	296, 307
Hin1I	GRCGYC	2 cut(s)	209, 288
Hin1II	CATG	1 cut(s)	323
HincII	GTYRAC	1 cut(s)	207
HindII	GTYRAC	1 cut(s)	207
HinfI	GANTC	4 cut(s)	49, 155, 262, 448
HphI	GGTGA	1 cut(s)	436
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	3 cut(s)	261, 267, 339
Hpy188III	TCNNGA	1 cut(s)	307
Hpy8I	GTNNAC	1 cut(s)	207
Hpy99I	CGWCG	4 cut(s)	208, 211, 214, 437
HpyAV	CCTTC	2 cut(s)	421, 457
HpyCH4III	ACNGT	1 cut(s)	489
HpyCH4IV	ACGT	2 cut(s)	209, 270
HpyCH4V	TGCA	2 cut(s)	111, 352
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 349
HpyF3I	CTNAG	1 cut(s)	378
HpySE526I	ACGT	2 cut(s)	209, 270
Hsp92I	GRCGYC	2 cut(s)	209, 288
Hsp92II	CATG	1 cut(s)	323
Kzo9I	GATC	4 cut(s)	303, 316, 328, 400
LmnI	GCTCC	1 cut(s)	43
LpnPI	CCDG	9 cut(s)	47, 56, 83, 181, 182, 227, 254, 353, 483
Lsp1109I	GCAGC	1 cut(s)	100
MaeI	CTAG	2 cut(s)	92, 183
MaeII	ACGT	2 cut(s)	209, 270
MaeIII	GTNAC	2 cut(s)	10, 493
MalI	GATC	4 cut(s)	305, 318, 330, 402
MboI	GATC	4 cut(s)	303, 316, 328, 400
MboII	GAAGA	4 cut(s)	374, 397, 454, 472
MhlI	GDGCHC	1 cut(s)	149
MluCI	AATT	1 cut(s)	508
MlyI	GAGTC	1 cut(s)	442
MmeI	TCCRAC	1 cut(s)	336
MroXI	GAANNNNTTC	1 cut(s)	467
MseI	TTAA	1 cut(s)	511
MspA1I	CMGCKG	1 cut(s)	377
MspR9I	CCNGG	2 cut(s)	71, 242
MvaI	CCWGG	2 cut(s)	71, 242
MwoI	GCNNNNNNNGC	2 cut(s)	88, 349
NdeII	GATC	4 cut(s)	303, 316, 328, 400
NlaIII	CATG	1 cut(s)	323
NlaIV	GGNNCC	2 cut(s)	45, 175
NmeAIII	GCCGAG	1 cut(s)	116
PcsI	WCGNNNNNNNCGW	3 cut(s)	44, 209, 312
PdmI	GAANNNNTTC	1 cut(s)	467
PfeI	GAWTC	3 cut(s)	49, 155, 262
PflFI	GACNNNGTC	1 cut(s)	211
PkrI	GCNGC	2 cut(s)	90, 376
PleI	GAGTC	1 cut(s)	442
PpsI	GAGTC	1 cut(s)	442
Psp124BI	GAGCTC	1 cut(s)	149
Psp6I	CCWGG	2 cut(s)	69, 240
PspGI	CCWGG	2 cut(s)	69, 240
PspN4I	GGNNCC	2 cut(s)	45, 175
PspPI	GGNCC	1 cut(s)	64
PsyI	GACNNNGTC	1 cut(s)	211
SacI	GAGCTC	1 cut(s)	149
SalI	GTCGAC	1 cut(s)	205
SaqAI	TTAA	1 cut(s)	511
SatI	GCNGC	2 cut(s)	89, 375
Sau3AI	GATC	4 cut(s)	303, 316, 328, 400
Sau96I	GGNCC	1 cut(s)	64
SchI	GAGTC	1 cut(s)	442
ScrFI	CCNGG	2 cut(s)	71, 242
SduI	GDGCHC	1 cut(s)	149
SetI	ASST	9 cut(s)	93, 149, 201, 212, 273, 345, 414, 426, 432
SgrDI	CGTCGACG	1 cut(s)	205
SinI	GGWCC	1 cut(s)	64
SpeI	ACTAGT	1 cut(s)	182
Sse9I	AATT	1 cut(s)	508
SsiI	CCGC	3 cut(s)	67, 216, 375
SspMI	CTAG	2 cut(s)	92, 183
SstI	GAGCTC	1 cut(s)	149
StyD4I	CCNGG	2 cut(s)	69, 240
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	1 cut(s)	489
TaiI	ACGT	2 cut(s)	212, 273
TaqI	TCGA	5 cut(s)	56, 206, 306, 315, 435
TasI	AATT	1 cut(s)	508
TauI	GCSGC	1 cut(s)	377
TfiI	GAWTC	3 cut(s)	49, 155, 262
Tru1I	TTAA	1 cut(s)	511
Tru9I	TTAA	1 cut(s)	511
TscAI	CASTG	3 cut(s)	175, 257, 494
TseI	GCWGC	1 cut(s)	88
TspGWI	ACGGA	2 cut(s)	53, 299
TspRI	CASTG	3 cut(s)	175, 257, 494
Tth111I	GACNNNGTC	1 cut(s)	211
VpaK11BI	GGWCC	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	206
XmnI	GAANNNNTTC	1 cut(s)	467
XspI	CTAG	2 cut(s)	92, 183
ZraI	GACGTC	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.