Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007233

Physical Location & Seq

Genomic Coordinates Reverse (-)

1774739 .. 1778736

Gene Structure 3998 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g01380.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGAAAGCTATTCTTCAAAATCCACCTTCGTACTACATGGCCCGTCAAGCACTTCACCAACCGAGTTGGAGCTTATTGTCAGGAGGCTCCCTTGTTTCATTCACTAGAGGGCATAACTTGGTGCGGCGGAGCTCACGGCTTCAGTCACCATCAACTTCACGCAATCTAGTTGTTAAGGCGGTTGCTACTCCAAATTCAGCTCTGGAATTACCGTTGACTGCAGAAAATGTGGAAAGTGTATTGGATGAAATCCGACCATATCTCATTTCTGATGGGGGGAATGTGGCATTACATGAGATTGATGGTAATGTAGTACGGTTAAAGCTACAAGGAGCATGTGGGTCATGTCCGAGCTCTGTTATGACAATGAAAATGGGTATTGAGCGTCGTTTAATGGAAAAAATTCCTGAAATAGTTGCTGTGGAACCAATAGCAGATGAAGAAACAGGCCTTGAGCTGAATGAAGAAAATATAGAGAAGGTACTTGAAGAAATTAGACCCTACTTAGTAGGGGAAGCAGGTGGATCTCTAGAACTTGTTGCAATTGAAGAGCCTATAGTCAAAGTCCGGATAACCGGTCCTGCTGCCGGGGTGATGACTGTTAGAGTTGCAGTCACACAGAAATTGCGTGAAAAAATCCCTACCATTGCAGCAGTTCAACTACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006790 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016020 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NifU

Protein Analysis

223

Amino Acids

24.1

Weight (kDa)

5.74

Isoelectric Point (pI)

64.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NifU	PF01106	77 - 142	1.9e-27	NifU-like domain
NifU	PF01106	158 - 219	8.4e-12	NifU-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49940 AT5G49940
fragaria_vesca	FvH4_7g01380 FvH4_7g01380 FvH4_7g01380 FvH4_7g01380 FvH4_7g01380
malus_domestica	MD08G1240400.v1.1 MD15G1433600.v1.1
prunus_persica	Prupe.1G577000_v2.0.a1
pyrus_communis	pycom08g20850 pycom15g38280
rosa_chinensis	RchiOBHm_Chr1g0317081
rosa_laevigata	RLG00000030628
rosa_multiflora	Rmu_co8218640.1_g000001 Rmu_sc0003689.1_g000019
rosa_roxburghii	Rroxscaffold_4G00330680
rosa_rugosa	Rorug01G0014300 Rorug01G0014400 Rorug01G0014500 Rorug01G0014600
rosa_samantha	Rh1AG025400 Rh1CG023800 Rh1DG022600
rosa_wichuraiana	Rw1G001770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	509
Acc36I	ACCTGC	1 cut(s)	509
AccIII	TCCGGA	1 cut(s)	567
AciI	CCGC	3 cut(s)	124, 127, 179
AclWI	GGATC	1 cut(s)	532
AcsI	RAATTY	2 cut(s)	193, 402
AcuI	CTGAAG	1 cut(s)	125
AfaI	GTAC	3 cut(s)	32, 315, 483
AfiI	CCNNNNNNNGG	1 cut(s)	587
AgeI	ACCGGT	1 cut(s)	575
AgsI	TTSAA	4 cut(s)	17, 488, 548, 659
AluBI	AGCT	7 cut(s)	8, 72, 132, 200, 325, 354, 457
AluI	AGCT	7 cut(s)	8, 72, 132, 200, 325, 354, 457
Alw21I	GWGCWC	2 cut(s)	134, 356
AlwI	GGATC	1 cut(s)	532
Aor13HI	TCCGGA	1 cut(s)	567
AoxI	GGCC	2 cut(s)	39, 448
ApeKI	GCWGC	2 cut(s)	584, 650
ApoI	RAATTY	2 cut(s)	193, 402
AsiGI	ACCGGT	1 cut(s)	575
Asp700I	GAANNNNTTC	1 cut(s)	402
AspS9I	GGNCC	2 cut(s)	40, 578
AsuC2I	CCSGG	1 cut(s)	589
AsuHPI	GGTGA	3 cut(s)	47, 138, 604
AvaII	GGWCC	1 cut(s)	578
BanII	GRGCYC	2 cut(s)	134, 356
Bbv12I	GWGCWC	2 cut(s)	134, 356
BbvI	GCAGC	2 cut(s)	571, 662
BccI	CCATC	3 cut(s)	157, 266, 296
BceAI	ACGGC	1 cut(s)	152
BcnI	CCSGG	1 cut(s)	589
BfaI	CTAG	3 cut(s)	105, 167, 530
BfmI	CTRYAG	2 cut(s)	219, 555
BfuAI	ACCTGC	1 cut(s)	509
BisI	GCNGC	3 cut(s)	125, 585, 651
BlsI	GCNGC	3 cut(s)	126, 586, 652
Bme1390I	CCNGG	1 cut(s)	589
Bme18I	GGWCC	1 cut(s)	578
BmgT120I	GGNCC	2 cut(s)	40, 578
BmiI	GGNNCC	2 cut(s)	88, 426
BmrFI	CCNGG	1 cut(s)	589
BpuEI	CTTGAG	1 cut(s)	473
BpuMI	CCSGG	1 cut(s)	589
BsaJI	CCNNGG	1 cut(s)	588
BsaWI	WCCGGW	2 cut(s)	567, 575
Bsc4I	CCNNNNNNNGG	1 cut(s)	587
Bse118I	RCCGGY	1 cut(s)	575
Bse3DI	GCAATG	1 cut(s)	645
BseAI	TCCGGA	1 cut(s)	567
BseDI	CCNNGG	1 cut(s)	588
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	1 cut(s)	587
BseMI	GCAATG	1 cut(s)	645
BseXI	GCAGC	2 cut(s)	571, 662
BshFI	GGCC	2 cut(s)	41, 450
BshTI	ACCGGT	1 cut(s)	575
BsiHKAI	GWGCWC	2 cut(s)	134, 356
BsiSI	CCGG	3 cut(s)	568, 576, 588
BslI	CCNNNNNNNGG	1 cut(s)	587
BsnI	GGCC	2 cut(s)	41, 450
Bsp1286I	GDGCHC	2 cut(s)	134, 356
Bsp13I	TCCGGA	1 cut(s)	567
Bsp143I	GATC	1 cut(s)	524
BspACI	CCGC	3 cut(s)	124, 127, 179
BspANI	GGCC	2 cut(s)	41, 450
BspEI	TCCGGA	1 cut(s)	567
BspLI	GGNNCC	2 cut(s)	88, 426
BspMAI	CTGCAG	1 cut(s)	223
BspMI	ACCTGC	1 cut(s)	509
BspPI	GGATC	1 cut(s)	532
BspQI	GCTCTTC	1 cut(s)	543
BsrDI	GCAATG	1 cut(s)	645
BsrFI	RCCGGY	1 cut(s)	575
BssAI	RCCGGY	1 cut(s)	575
BssECI	CCNNGG	1 cut(s)	588
BssMI	GATC	1 cut(s)	524
Bst4CI	ACNGT	4 cut(s)	213, 318, 601, 666
Bst6I	CTCTTC	1 cut(s)	543
BstDEI	CTNAG	1 cut(s)	505
BstF5I	GGATG	1 cut(s)	250
BstKTI	GATC	1 cut(s)	527
BstMBI	GATC	1 cut(s)	524
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNSI	RCATGY	1 cut(s)	339
BstSCI	CCNGG	1 cut(s)	587
BstSFI	CTRYAG	2 cut(s)	219, 555
BstV1I	GCAGC	2 cut(s)	571, 662
BstX2I	RGATCY	1 cut(s)	524
BstYI	RGATCY	1 cut(s)	524
BsuRI	GGCC	2 cut(s)	41, 450
BtsCI	GGATG	1 cut(s)	250
BveI	ACCTGC	1 cut(s)	509
Cfr10I	RCCGGY	1 cut(s)	575
Cfr13I	GGNCC	2 cut(s)	40, 578
CseI	GACGC	1 cut(s)	374
Csp6I	GTAC	3 cut(s)	31, 314, 482
CspAI	ACCGGT	1 cut(s)	575
CviAII	CATG	4 cut(s)	37, 293, 336, 345
CviQI	GTAC	3 cut(s)	31, 314, 482
DdeI	CTNAG	1 cut(s)	505
DpnI	GATC	1 cut(s)	526
DpnII	GATC	1 cut(s)	524
Eam1104I	CTCTTC	1 cut(s)	543
EarI	CTCTTC	1 cut(s)	543
EciI	GGCGGA	1 cut(s)	142
Ecl136II	GAGCTC	2 cut(s)	132, 354
Eco147I	AGGCCT	1 cut(s)	450
Eco24I	GRGCYC	2 cut(s)	134, 356
Eco47I	GGWCC	1 cut(s)	578
Eco53kI	GAGCTC	2 cut(s)	132, 354
Eco57I	CTGAAG	1 cut(s)	125
EcoICRI	GAGCTC	2 cut(s)	132, 354
EcoT38I	GRGCYC	2 cut(s)	134, 356
FaeI	CATG	4 cut(s)	40, 296, 339, 348
FaiI	YATR	9 cut(s)	38, 114, 259, 294, 337, 346, 362, 473, 557
FalI	AAGNNNNNCTT	1 cut(s)	29
FatI	CATG	4 cut(s)	36, 292, 335, 344
Fnu4HI	GCNGC	3 cut(s)	125, 585, 651
FokI	GGATG	1 cut(s)	257
FriOI	GRGCYC	2 cut(s)	134, 356
Fsp4HI	GCNGC	3 cut(s)	125, 585, 651
FspBI	CTAG	3 cut(s)	105, 167, 530
GluI	GCNGC	3 cut(s)	125, 585, 651
HaeIII	GGCC	2 cut(s)	41, 450
HapII	CCGG	3 cut(s)	568, 576, 588
HgaI	GACGC	1 cut(s)	374
Hin1II	CATG	4 cut(s)	40, 296, 339, 348
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HpaII	CCGG	3 cut(s)	568, 576, 588
HphI	GGTGA	3 cut(s)	47, 138, 604
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	3 cut(s)	254, 271, 351
Hpy188III	TCNNGA	5 cut(s)	81, 203, 407, 530, 568
Hpy8I	GTNNAC	1 cut(s)	216
Hpy99I	CGWCG	1 cut(s)	390
HpyAV	CCTTC	2 cut(s)	36, 472
HpyCH4III	ACNGT	4 cut(s)	213, 318, 601, 666
HpyCH4V	TGCA	4 cut(s)	221, 542, 611, 650
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	1 cut(s)	505
Hsp92II	CATG	4 cut(s)	40, 296, 339, 348
Kpn2I	TCCGGA	1 cut(s)	567
Kzo9I	GATC	1 cut(s)	524
LguI	GCTCTTC	1 cut(s)	543
LmnI	GCTCC	4 cut(s)	69, 92, 129, 332
LpnPI	CCDG	9 cut(s)	66, 188, 420, 432, 504, 581, 589, 594, 601
Lsp1109I	GCAGC	2 cut(s)	571, 662
MaeI	CTAG	3 cut(s)	105, 167, 530
MaeIII	GTNAC	2 cut(s)	144, 613
MalI	GATC	1 cut(s)	526
MboI	GATC	1 cut(s)	524
MboII	GAAGA	5 cut(s)	5, 452, 476, 500, 560
MfeI	CAATTG	1 cut(s)	543
MflI	RGATCY	1 cut(s)	524
MhlI	GDGCHC	2 cut(s)	134, 356
MluCI	AATT	6 cut(s)	193, 206, 402, 492, 543, 623
MmeI	TCCRAC	2 cut(s)	47, 277
MnlI	CCTC	2 cut(s)	77, 101
MroI	TCCGGA	1 cut(s)	567
MroXI	GAANNNNTTC	1 cut(s)	402
MseI	TTAA	3 cut(s)	174, 320, 392
MspI	CCGG	3 cut(s)	568, 576, 588
MspR9I	CCNGG	1 cut(s)	589
MunI	CAATTG	1 cut(s)	543
MwoI	GCNNNNNNNGC	1 cut(s)	47
NciI	CCSGG	1 cut(s)	589
NdeII	GATC	1 cut(s)	524
NlaIII	CATG	4 cut(s)	40, 296, 339, 348
NlaIV	GGNNCC	2 cut(s)	88, 426
NmuCI	GTSAC	2 cut(s)	144, 613
NspI	RCATGY	1 cut(s)	339
PaqCI	CACCTGC	1 cut(s)	509
PceI	AGGCCT	1 cut(s)	450
PciSI	GCTCTTC	1 cut(s)	543
PdmI	GAANNNNTTC	1 cut(s)	402
PinAI	ACCGGT	1 cut(s)	575
PkrI	GCNGC	3 cut(s)	126, 586, 652
Psp124BI	GAGCTC	2 cut(s)	134, 356
PspN4I	GGNNCC	2 cut(s)	88, 426
PspPI	GGNCC	2 cut(s)	40, 578
PstI	CTGCAG	1 cut(s)	223
PsuI	RGATCY	1 cut(s)	524
RsaI	GTAC	3 cut(s)	32, 315, 483
RsaNI	GTAC	3 cut(s)	31, 314, 482
SacI	GAGCTC	2 cut(s)	134, 356
SapI	GCTCTTC	1 cut(s)	543
SaqAI	TTAA	3 cut(s)	174, 320, 392
SatI	GCNGC	3 cut(s)	125, 585, 651
Sau3AI	GATC	1 cut(s)	524
Sau96I	GGNCC	2 cut(s)	40, 578
ScrFI	CCNGG	1 cut(s)	589
SduI	GDGCHC	2 cut(s)	134, 356
SfcI	CTRYAG	2 cut(s)	219, 555
SinI	GGWCC	1 cut(s)	578
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	6 cut(s)	193, 206, 402, 492, 543, 623
SseBI	AGGCCT	1 cut(s)	450
SsiI	CCGC	3 cut(s)	124, 127, 179
SspMI	CTAG	3 cut(s)	105, 167, 530
SstI	GAGCTC	2 cut(s)	134, 356
StuI	AGGCCT	1 cut(s)	450
StyD4I	CCNGG	1 cut(s)	587
TaaI	ACNGT	4 cut(s)	213, 318, 601, 666
TasI	AATT	6 cut(s)	193, 206, 402, 492, 543, 623
TauI	GCSGC	1 cut(s)	127
Tru1I	TTAA	3 cut(s)	174, 320, 392
Tru9I	TTAA	3 cut(s)	174, 320, 392
TseFI	GTSAC	2 cut(s)	144, 613
TseI	GCWGC	2 cut(s)	584, 650
Tsp45I	GTSAC	2 cut(s)	144, 613
TspDTI	ATGAA	6 cut(s)	17, 87, 261, 383, 453, 477
VpaK11BI	GGWCC	1 cut(s)	578
XapI	RAATTY	2 cut(s)	193, 402
XbaI	TCTAGA	1 cut(s)	529
XceI	RCATGY	1 cut(s)	339
XmnI	GAANNNNTTC	1 cut(s)	402
XspI	CTAG	3 cut(s)	105, 167, 530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.