Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007233

Physical Location & Seq

Genomic Coordinates Reverse (-)

2544005 .. 2544917

Gene Structure 913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0014500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGATTTCCGGTCGTTGTGCTGCTTGCAGGTATTTGAGAAGGAGATGCCCCTCAGATTGCATATTCGCTCCATATTTTCCATCAAATAATCCTCAAAGATTTGCTGCTGTTCATAGAATCTTTGGTGCCAGCAATGTTGGAAGAATGCTCCAGCAACTCCCACCTGATCTTCGAGCTCAAGCTGCAGACACTTTGTATTATGAGGCAGAATGCAGGGTAGAAGATCCTGTGTACGGCTGTGTTGGGGTTATTTCCCGATTACATGAACAAATAGATGAAGCAGAATGTGAATTAGCTAAGACACGAGCTGACATTGTCATCAACTCTGATATTGGACAACAAGCTCAAGTTCAGCATATTCATGATGAAGTTGAACACAACTCAAGCCTTTTGCAGGAGCAAAGCAATGTTGGGCAGACTCAACTTGGTTCTTCCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006790 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016020 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NifU

Protein Analysis

146

Amino Acids

16.28

Weight (kDa)

5.46

Isoelectric Point (pI)

58.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	5 - 102	6.7e-40	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0007233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49940 AT5G49940
fragaria_vesca	FvH4_7g01380 FvH4_7g01380 FvH4_7g01380 FvH4_7g01380 FvH4_7g01380
malus_domestica	MD08G1240400.v1.1 MD15G1433600.v1.1
prunus_persica	Prupe.1G577000_v2.0.a1
pyrus_communis	pycom08g20850 pycom15g38280
rosa_chinensis	RchiOBHm_Chr1g0317081
rosa_laevigata	RLG00000030628
rosa_multiflora	Rmu_co8218640.1_g000001 Rmu_sc0003689.1_g000019
rosa_roxburghii	Rroxscaffold_4G00330680
rosa_rugosa	Rorug01G0014300 Rorug01G0014400 Rorug01G0014500 Rorug01G0014600
rosa_samantha	Rh1AG025400 Rh1CG023800 Rh1DG022600
rosa_wichuraiana	Rw1G001770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	18
AccB1I	GGYRCC	1 cut(s)	125
AclWI	GGATC	1 cut(s)	218
AfaI	GTAC	1 cut(s)	233
AfiI	CCNNNNNNNGG	2 cut(s)	233, 394
AgsI	TTSAA	1 cut(s)	374
AluBI	AGCT	5 cut(s)	176, 182, 296, 308, 344
AluI	AGCT	5 cut(s)	176, 182, 296, 308, 344
Alw21I	GWGCWC	1 cut(s)	178
AlwI	GGATC	1 cut(s)	218
ApeKI	GCWGC	3 cut(s)	20, 104, 182
BanI	GGYRCC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	178
BauI	CACGAG	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	178
BbvI	GCAGC	3 cut(s)	7, 91, 169
BccI	CCATC	1 cut(s)	88
BceAI	ACGGC	1 cut(s)	250
BfmI	CTRYAG	1 cut(s)	183
BfuAI	ACCTGC	1 cut(s)	18
BisI	GCNGC	3 cut(s)	21, 105, 183
BlsI	GCNGC	3 cut(s)	22, 106, 184
BmiI	GGNNCC	1 cut(s)	127
BmsI	GCATC	1 cut(s)	35
BpmI	CTGGAG	1 cut(s)	134
BpuEI	CTTGAG	3 cut(s)	162, 330, 367
BsaWI	WCCGGW	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 394
Bse3DI	GCAATG	2 cut(s)	139, 412
BseLI	CCNNNNNNNGG	2 cut(s)	233, 394
BseMI	GCAATG	2 cut(s)	139, 412
BseMII	CTCAG	1 cut(s)	66
BseXI	GCAGC	3 cut(s)	7, 91, 169
Bsh1285I	CGRYCG	1 cut(s)	13
BshNI	GGYRCC	1 cut(s)	125
BsiEI	CGRYCG	1 cut(s)	13
BsiHKAI	GWGCWC	1 cut(s)	178
BsiSI	CCGG	1 cut(s)	9
BslI	CCNNNNNNNGG	2 cut(s)	233, 394
BsmI	GAATGC	2 cut(s)	150, 215
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp143I	GATC	2 cut(s)	166, 223
BspCNI	CTCAG	1 cut(s)	65
BspHI	TCATGA	1 cut(s)	361
BspLI	GGNNCC	1 cut(s)	127
BspMAI	CTGCAG	1 cut(s)	187
BspMI	ACCTGC	1 cut(s)	18
BspPI	GGATC	1 cut(s)	218
BspT107I	GGYRCC	1 cut(s)	125
BsrDI	GCAATG	2 cut(s)	139, 412
BssMI	GATC	2 cut(s)	166, 223
BssSI	CACGAG	1 cut(s)	303
Bst2BI	CACGAG	1 cut(s)	303
BstC8I	GCNNGC	2 cut(s)	25, 130
BstDEI	CTNAG	2 cut(s)	52, 297
BstENI	CCTNNNNNAGG	1 cut(s)	392
BstKTI	GATC	2 cut(s)	169, 226
BstMBI	GATC	2 cut(s)	166, 223
BstMCI	CGRYCG	1 cut(s)	13
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstSFI	CTRYAG	1 cut(s)	183
BstV1I	GCAGC	3 cut(s)	7, 91, 169
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BveI	ACCTGC	1 cut(s)	18
Cac8I	GCNNGC	2 cut(s)	25, 130
CciI	TCATGA	1 cut(s)	361
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	2 cut(s)	263, 362
CviJI	RGCY	7 cut(s)	176, 182, 237, 296, 308, 344, 387
CviKI_1	RGCY	7 cut(s)	176, 182, 237, 296, 308, 344, 387
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	2 cut(s)	52, 297
DpnI	GATC	2 cut(s)	168, 225
DpnII	GATC	2 cut(s)	166, 223
Ecl136II	GAGCTC	1 cut(s)	176
Eco24I	GRGCYC	1 cut(s)	178
Eco53kI	GAGCTC	1 cut(s)	176
EcoICRI	GAGCTC	1 cut(s)	176
EcoNI	CCTNNNNNAGG	1 cut(s)	392
EcoT38I	GRGCYC	1 cut(s)	178
FaeI	CATG	2 cut(s)	266, 365
FaiI	YATR	7 cut(s)	62, 73, 114, 201, 264, 357, 363
FatI	CATG	2 cut(s)	262, 361
Fnu4HI	GCNGC	3 cut(s)	21, 105, 183
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	3 cut(s)	21, 105, 183
GluI	GCNGC	3 cut(s)	21, 105, 183
GsuI	CTGGAG	1 cut(s)	134
HapII	CCGG	1 cut(s)	9
Hin1II	CATG	2 cut(s)	266, 365
HinfI	GANTC	2 cut(s)	117, 418
HpaII	CCGG	1 cut(s)	9
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	2 cut(s)	55, 328
Hpy188III	TCNNGA	2 cut(s)	255, 362
Hpy8I	GTNNAC	1 cut(s)	232
HpyAV	CCTTC	1 cut(s)	33
HpyCH4V	TGCA	5 cut(s)	27, 60, 185, 213, 394
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	2 cut(s)	52, 297
Hsp92II	CATG	2 cut(s)	266, 365
Kzo9I	GATC	2 cut(s)	166, 223
LmnI	GCTCC	3 cut(s)	73, 153, 397
LpnPI	CCDG	8 cut(s)	13, 22, 142, 164, 177, 199, 240, 380
Lsp1109I	GCAGC	3 cut(s)	7, 91, 169
LweI	GCATC	1 cut(s)	35
MalI	GATC	2 cut(s)	168, 225
MboI	GATC	2 cut(s)	166, 223
MboII	GAAGA	4 cut(s)	153, 161, 233, 423
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	1 cut(s)	178
MluCI	AATT	1 cut(s)	290
MlyI	GAGTC	1 cut(s)	412
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	3 cut(s)	61, 102, 196
MslI	CAYNNNNRTG	1 cut(s)	360
MspI	CCGG	1 cut(s)	9
Mva1269I	GAATGC	2 cut(s)	150, 215
MwoI	GCNNNNNNNGC	1 cut(s)	182
NdeII	GATC	2 cut(s)	166, 223
NlaIII	CATG	2 cut(s)	266, 365
NlaIV	GGNNCC	1 cut(s)	127
PagI	TCATGA	1 cut(s)	361
PctI	GAATGC	2 cut(s)	150, 215
PfeI	GAWTC	1 cut(s)	117
PflFI	GACNNNGTC	1 cut(s)	314
PkrI	GCNGC	3 cut(s)	22, 106, 184
PleI	GAGTC	1 cut(s)	412
PpsI	GAGTC	1 cut(s)	412
Psp124BI	GAGCTC	1 cut(s)	178
PspN4I	GGNNCC	1 cut(s)	127
PstI	CTGCAG	1 cut(s)	187
PsuI	RGATCY	1 cut(s)	223
PsyI	GACNNNGTC	1 cut(s)	314
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
RseI	CAYNNNNRTG	1 cut(s)	360
SacI	GAGCTC	1 cut(s)	178
SatI	GCNGC	3 cut(s)	21, 105, 183
Sau3AI	GATC	2 cut(s)	166, 223
SchI	GAGTC	1 cut(s)	412
SduI	GDGCHC	1 cut(s)	178
SetI	ASST	7 cut(s)	32, 166, 178, 184, 298, 310, 346
SfaNI	GCATC	1 cut(s)	35
SfcI	CTRYAG	1 cut(s)	183
SmiMI	CAYNNNNRTG	1 cut(s)	360
SmlI	CTYRAG	3 cut(s)	177, 345, 382
SmoI	CTYRAG	3 cut(s)	177, 345, 382
Sse9I	AATT	1 cut(s)	290
SstI	GAGCTC	1 cut(s)	178
TaqI	TCGA	1 cut(s)	172
TasI	AATT	1 cut(s)	290
TfiI	GAWTC	1 cut(s)	117
TseI	GCWGC	3 cut(s)	20, 104, 182
TspDTI	ATGAA	5 cut(s)	101, 279, 291, 350, 381
Tth111I	GACNNNGTC	1 cut(s)	314
XagI	CCTNNNNNAGG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.