Prupe.1G577000_v2.0.a1

NifU-like protein 2

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
46977682 .. 46981241
3560 bp
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UTR
Exon/CDS
Intron
Prupe.1G577000.1

Sequence Viewer

Length: 678 bp
ATGAGAGCCATGCTTTTAACTTCACCGTCATACTGCAGACCCCAACAAGCCCTTCAGCAACAACCTTCCACGAGTTGGAGTTTATTTTTAGGAGGCTCCCATGTATCGTTCAGTAGAGGGCATAATCTGGCGCGGCCTTGCTCACGGGTTCGATTGCGTTCAGCTTCACGCAGCCTAGTGGTTAAGGCAGTTGCTACTCCAAATTCAGCAGTCGAGTTGTCACTGACTGCAGAGAACGTTGAAAGTGTATTGGATGAAATCCGACCATATCTGATTTCCGATGGGGGAAATGTTGCATTACATGAAATTGAAGGAAATGTAGTGCGCTTGAAGCTACAGGGAGCATGTGGCTCCTGTCCAAGCTCTGTTATGACAATGAAAATGGGTATTGAGCGTCGTTTAATGGAAAAAATCCCTGAAATAGTTGCAGTGGAACCAATAGCAGATGGAGAAACAGGGCTTGAACTGAATGAAGAAAATATAGAGAAGGTACTTGAAGAAATTAGACCCTACTTAGTAGGGGCAGCAGGTGGATCTCTTGAACTTGTAACAATCGAGGAGCCTATAGTGAAAGTCCGTATCACAGGTCCAGCAGCCGGGGTAATGACTGTTAGGGTTGCTGTCACACAGAAATTGAGAGAGAAAATCCCATCAATTGCAGCAGTTCAACTACTGTAA

Protein Analysis

226

Amino Acids

24.29

Weight (kDa)

6.85

Isoelectric Point (pI)

57.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 518
Acc36I ACCTGC 1 cut(s) 518
AccB7I CCANNNNNTGG 1 cut(s) 75
AccII CGCG 1 cut(s) 133
AciI CCGC 1 cut(s) 133
AclI AACGTT 1 cut(s) 237
AclWI GGATC 1 cut(s) 541
AcsI RAATTY 1 cut(s) 202
AcuI CTGAAG 1 cut(s) 38
AfaI GTAC 1 cut(s) 492
AfiI CCNNNNNNNGG 2 cut(s) 75, 596
AgsI TTSAA 7 cut(s) 242, 311, 331, 464, 497, 542, 668
AjuI GAANNNNNNNTTGG 2 cut(s) 36, 68
AluBI AGCT 3 cut(s) 164, 334, 363
AluI AGCT 3 cut(s) 164, 334, 363
AlwI GGATC 1 cut(s) 541
AoxI GGCC 1 cut(s) 134
ApeKI GCWGC 4 cut(s) 171, 524, 593, 659
ApoI RAATTY 1 cut(s) 202
AspLEI GCGC 2 cut(s) 133, 327
AspS9I GGNCC 1 cut(s) 587
AsuC2I CCSGG 1 cut(s) 598
AsuHPI GGTGA 1 cut(s) 15
AvaII GGWCC 1 cut(s) 587
BauI CACGAG 1 cut(s) 70
BbvI GCAGC 4 cut(s) 183, 536, 605, 671
BccI CCATC 3 cut(s) 275, 440, 658
BcnI CCSGG 1 cut(s) 598
BfaI CTAG 1 cut(s) 176
BfmI CTRYAG 4 cut(s) 34, 228, 335, 564
BfuAI ACCTGC 1 cut(s) 518
BisI GCNGC 5 cut(s) 134, 172, 525, 594, 660
BlsI GCNGC 5 cut(s) 135, 173, 526, 595, 661
Bme1390I CCNGG 1 cut(s) 598
Bme18I GGWCC 1 cut(s) 587
BmgT120I GGNCC 1 cut(s) 587
BmiI GGNNCC 4 cut(s) 97, 352, 435, 561
BmrFI CCNGG 1 cut(s) 598
BpuMI CCSGG 1 cut(s) 598
BsaJI CCNNGG 1 cut(s) 597
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 596
BseDI CCNNGG 1 cut(s) 597
BseGI GGATG 1 cut(s) 259
BseLI CCNNNNNNNGG 2 cut(s) 75, 596
BseRI GAGGAG 1 cut(s) 572
BseXI GCAGC 4 cut(s) 183, 536, 605, 671
Bsh1236I CGCG 1 cut(s) 133
BshFI GGCC 1 cut(s) 136
BsiSI CCGG 1 cut(s) 597
BslI CCNNNNNNNGG 2 cut(s) 75, 596
BsnI GGCC 1 cut(s) 136
Bsp143I GATC 1 cut(s) 533
BspACI CCGC 1 cut(s) 133
BspANI GGCC 1 cut(s) 136
BspFNI CGCG 1 cut(s) 133
BspLI GGNNCC 4 cut(s) 97, 352, 435, 561
BspMAI CTGCAG 2 cut(s) 38, 232
BspMI ACCTGC 1 cut(s) 518
BspPI GGATC 1 cut(s) 541
BssECI CCNNGG 1 cut(s) 597
BssMI GATC 1 cut(s) 533
BssSI CACGAG 1 cut(s) 70
Bst2BI CACGAG 1 cut(s) 70
Bst4CI ACNGT 3 cut(s) 27, 610, 675
BstDEI CTNAG 1 cut(s) 514
BstF5I GGATG 1 cut(s) 259
BstFNI CGCG 1 cut(s) 133
BstHHI GCGC 2 cut(s) 133, 327
BstKTI GATC 1 cut(s) 536
BstMBI GATC 1 cut(s) 533
BstMWI GCNNNNNNNGC 1 cut(s) 331
BstNSI RCATGY 1 cut(s) 348
BstSCI CCNGG 1 cut(s) 596
BstSFI CTRYAG 4 cut(s) 34, 228, 335, 564
BstUI CGCG 1 cut(s) 133
BstV1I GCAGC 4 cut(s) 183, 536, 605, 671
BstX2I RGATCY 1 cut(s) 533
BstYI RGATCY 1 cut(s) 533
BsuRI GGCC 1 cut(s) 136
BtsCI GGATG 1 cut(s) 259
BtsI GCAGTG 1 cut(s) 435
BtsIMutI CAGTG 2 cut(s) 221, 435
BveI ACCTGC 1 cut(s) 518
CfoI GCGC 2 cut(s) 133, 327
Cfr13I GGNCC 1 cut(s) 587
CseI GACGC 1 cut(s) 383
Csp6I GTAC 1 cut(s) 491
CviAII CATG 4 cut(s) 10, 101, 302, 345
CviQI GTAC 1 cut(s) 491
DdeI CTNAG 1 cut(s) 514
DpnI GATC 1 cut(s) 535
DpnII GATC 1 cut(s) 533
Eco47I GGWCC 1 cut(s) 587
Eco57I CTGAAG 1 cut(s) 38
FaeI CATG 4 cut(s) 13, 104, 305, 348
FatI CATG 4 cut(s) 9, 100, 301, 344
Fnu4HI GCNGC 5 cut(s) 134, 172, 525, 594, 660
FokI GGATG 1 cut(s) 266
Fsp4HI GCNGC 5 cut(s) 134, 172, 525, 594, 660
FspBI CTAG 1 cut(s) 176
GlaI GCGC 2 cut(s) 132, 326
GluI GCNGC 5 cut(s) 134, 172, 525, 594, 660
HaeIII GGCC 1 cut(s) 136
HapII CCGG 1 cut(s) 597
HgaI GACGC 1 cut(s) 383
HhaI GCGC 2 cut(s) 133, 327
Hin1II CATG 4 cut(s) 13, 104, 305, 348
Hin6I GCGC 2 cut(s) 131, 325
HinP1I GCGC 2 cut(s) 131, 325
HpaII CCGG 1 cut(s) 597
HphI GGTGA 1 cut(s) 15
Hpy188I TCNGA 3 cut(s) 263, 273, 280
Hpy188III TCNNGA 1 cut(s) 539
Hpy99I CGWCG 1 cut(s) 399
HpyAV CCTTC 4 cut(s) 62, 75, 305, 481
HpyCH4III ACNGT 3 cut(s) 27, 610, 675
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 5 cut(s) 36, 230, 296, 428, 659
HpyF10VI GCNNNNNNNGC 1 cut(s) 331
HpyF3I CTNAG 1 cut(s) 514
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 4 cut(s) 13, 104, 305, 348
HspAI GCGC 2 cut(s) 131, 325
Kzo9I GATC 1 cut(s) 533
LmnI GCTCC 4 cut(s) 101, 341, 356, 559
LpnPI CCDG 9 cut(s) 113, 323, 367, 429, 441, 513, 570, 603, 610
Lsp1109I GCAGC 4 cut(s) 183, 536, 605, 671
MaeI CTAG 1 cut(s) 176
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 3 cut(s) 219, 547, 622
MalI GATC 1 cut(s) 535
MboI GATC 1 cut(s) 533
MboII GAAGA 2 cut(s) 485, 509
MfeI CAATTG 1 cut(s) 654
MflI RGATCY 1 cut(s) 533
MluCI AATT 5 cut(s) 202, 306, 501, 632, 654
MmeI TCCRAC 2 cut(s) 56, 286
MnlI CCTC 3 cut(s) 86, 110, 550
MseI TTAA 3 cut(s) 17, 183, 401
MspI CCGG 1 cut(s) 597
MspR9I CCNGG 1 cut(s) 598
MunI CAATTG 1 cut(s) 654
MvnI CGCG 1 cut(s) 133
MwoI GCNNNNNNNGC 1 cut(s) 331
NciI CCSGG 1 cut(s) 598
NdeII GATC 1 cut(s) 533
NlaIII CATG 4 cut(s) 13, 104, 305, 348
NlaIV GGNNCC 4 cut(s) 97, 352, 435, 561
NmuCI GTSAC 2 cut(s) 219, 622
NspI RCATGY 1 cut(s) 348
PaqCI CACCTGC 1 cut(s) 518
PflMI CCANNNNNTGG 1 cut(s) 75
PkrI GCNGC 5 cut(s) 135, 173, 526, 595, 661
Psp1406I AACGTT 1 cut(s) 237
PspN4I GGNNCC 4 cut(s) 97, 352, 435, 561
PspPI GGNCC 1 cut(s) 587
PstI CTGCAG 2 cut(s) 38, 232
PsuI RGATCY 1 cut(s) 533
RsaI GTAC 1 cut(s) 492
RsaNI GTAC 1 cut(s) 491
SaqAI TTAA 3 cut(s) 17, 183, 401
SatI GCNGC 5 cut(s) 134, 172, 525, 594, 660
Sau3AI GATC 1 cut(s) 533
Sau96I GGNCC 1 cut(s) 587
ScrFI CCNGG 1 cut(s) 598
SetI ASST 8 cut(s) 67, 166, 240, 336, 365, 492, 532, 589
SfcI CTRYAG 4 cut(s) 34, 228, 335, 564
SinI GGWCC 1 cut(s) 587
Sse9I AATT 5 cut(s) 202, 306, 501, 632, 654
SsiI CCGC 1 cut(s) 133
SspMI CTAG 1 cut(s) 176
StyD4I CCNGG 1 cut(s) 596
TaaI ACNGT 3 cut(s) 27, 610, 675
TaiI ACGT 1 cut(s) 240
TaqI TCGA 3 cut(s) 151, 213, 555
TasI AATT 5 cut(s) 202, 306, 501, 632, 654
TauI GCSGC 1 cut(s) 136
Tru1I TTAA 3 cut(s) 17, 183, 401
Tru9I TTAA 3 cut(s) 17, 183, 401
TscAI CASTG 2 cut(s) 228, 435
TseFI GTSAC 2 cut(s) 219, 622
TseI GCWGC 4 cut(s) 171, 524, 593, 659
Tsp45I GTSAC 2 cut(s) 219, 622
TspDTI ATGAA 4 cut(s) 270, 318, 392, 486
TspGWI ACGGA 1 cut(s) 566
TspRI CASTG 2 cut(s) 228, 435
Van91I CCANNNNNTGG 1 cut(s) 75
VpaK11BI GGWCC 1 cut(s) 587
XapI RAATTY 1 cut(s) 202
XceI RCATGY 1 cut(s) 348
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.