Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007233

Physical Location & Seq

Genomic Coordinates Forward (+)

2507756 .. 2510259

Gene Structure 2504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0014400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGTTTCTCCTCCTTCCTCTACTCAAACCCTCGGCGACAGATCTGATTTCAAGCCAACTGAAAAGGTAACTGTCTACGATTGGTGGTTGGTCAAATCCAAAGAGAATGACCAAAAAAGGAGACTTGCCGTCGCCGGTGTTTCTTCTGCCCCATGCTGCAACTGGCATGTATGCAGAACTGATGCAAAGGTGATTATGAGTACCATCTCAGTTCACTTTCATCGCTTCACTGCTTCCAGTTCACTTTCCAGCGCCAACAACCAGAACCCAGCTCAGGAACTCGCTGTTATTCTTGAAGTTGACGGGGTTCTTATGGATGCGTATCATTTGGGTAACCTCCAACCTTCAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006790 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016020 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NifU

Protein Analysis

117

Amino Acids

12.94

Weight (kDa)

6.89

Isoelectric Point (pI)

48.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49940 AT5G49940
fragaria_vesca	FvH4_7g01380 FvH4_7g01380 FvH4_7g01380 FvH4_7g01380 FvH4_7g01380
malus_domestica	MD08G1240400.v1.1 MD15G1433600.v1.1
prunus_persica	Prupe.1G577000_v2.0.a1
pyrus_communis	pycom08g20850 pycom15g38280
rosa_chinensis	RchiOBHm_Chr1g0317081
rosa_laevigata	RLG00000030628
rosa_multiflora	Rmu_co8218640.1_g000001 Rmu_sc0003689.1_g000019
rosa_roxburghii	Rroxscaffold_4G00330680
rosa_rugosa	Rorug01G0014300 Rorug01G0014400 Rorug01G0014500 Rorug01G0014600
rosa_samantha	Rh1AG025400 Rh1CG023800 Rh1DG022600
rosa_wichuraiana	Rw1G001770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	75
AfaI	GTAC	1 cut(s)	202
AfiI	CCNNNNNNNGG	1 cut(s)	274
AgsI	TTSAA	3 cut(s)	52, 296, 348
AhdI	GACNNNNNGTC	1 cut(s)	128
AluBI	AGCT	1 cut(s)	272
AluI	AGCT	1 cut(s)	272
Alw26I	GTCTC	1 cut(s)	115
ApeKI	GCWGC	1 cut(s)	156
AspLEI	GCGC	1 cut(s)	254
AsuHPI	GGTGA	1 cut(s)	202
BbvI	GCAGC	1 cut(s)	143
BccI	CCATC	1 cut(s)	212
BceAI	ACGGC	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	115
BfoI	RGCGCY	1 cut(s)	255
BglII	AGATCT	1 cut(s)	41
BisI	GCNGC	1 cut(s)	157
BlsI	GCNGC	1 cut(s)	158
BmeRI	GACNNNNNGTC	1 cut(s)	128
BmsI	GCATC	2 cut(s)	172, 307
Bpu10I	CCTNAGC	1 cut(s)	273
BsaBI	GATNNNNATC	1 cut(s)	321
BsaJI	CCNNGG	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
Bse118I	RCCGGY	1 cut(s)	134
Bse1I	ACTGG	2 cut(s)	167, 237
Bse8I	GATNNNNATC	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	1 cut(s)	322
BseJI	GATNNNNATC	1 cut(s)	321
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseMII	CTCAG	2 cut(s)	222, 287
BseNI	ACTGG	2 cut(s)	167, 237
BseXI	GCAGC	1 cut(s)	143
BseYI	CCCAGC	1 cut(s)	268
BsiSI	CCGG	1 cut(s)	135
BslI	CCNNNNNNNGG	1 cut(s)	274
BsmAI	GTCTC	1 cut(s)	115
Bsp143I	GATC	1 cut(s)	41
BspCNI	CTCAG	2 cut(s)	221, 286
BsrFI	RCCGGY	1 cut(s)	134
BsrI	ACTGG	2 cut(s)	167, 237
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	73
BstDEI	CTNAG	2 cut(s)	208, 273
BstEII	GGTNACC	1 cut(s)	332
BstF5I	GGATG	1 cut(s)	322
BstH2I	RGCGCY	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	254
BstKTI	GATC	1 cut(s)	44
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	1 cut(s)	41
BstNSI	RCATGY	1 cut(s)	170
BstPI	GGTNACC	1 cut(s)	332
BstV1I	GCAGC	1 cut(s)	143
BstX2I	RGATCY	1 cut(s)	41
BstYI	RGATCY	1 cut(s)	41
BtgZI	GCGATG	1 cut(s)	206
BtsCI	GGATG	1 cut(s)	322
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	228
CfoI	GCGC	1 cut(s)	254
Cfr10I	RCCGGY	1 cut(s)	134
Csp6I	GTAC	1 cut(s)	201
CviAII	CATG	2 cut(s)	153, 167
CviJI	RGCY	2 cut(s)	55, 272
CviKI_1	RGCY	2 cut(s)	55, 272
CviQI	GTAC	1 cut(s)	201
DdeI	CTNAG	2 cut(s)	208, 273
DpnI	GATC	1 cut(s)	43
DpnII	GATC	1 cut(s)	41
DriI	GACNNNNNGTC	1 cut(s)	128
Eam1105I	GACNNNNNGTC	1 cut(s)	128
Eco91I	GGTNACC	1 cut(s)	332
EcoO65I	GGTNACC	1 cut(s)	332
FaeI	CATG	2 cut(s)	156, 170
FaiI	YATR	5 cut(s)	154, 168, 172, 197, 314
FatI	CATG	2 cut(s)	152, 166
FblI	GTMKAC	1 cut(s)	75
Fnu4HI	GCNGC	1 cut(s)	157
FokI	GGATG	1 cut(s)	329
Fsp4HI	GCNGC	1 cut(s)	157
GlaI	GCGC	1 cut(s)	253
GluI	GCNGC	1 cut(s)	157
GsaI	CCCAGC	1 cut(s)	272
HaeII	RGCGCY	1 cut(s)	255
HapII	CCGG	1 cut(s)	135
HhaI	GCGC	1 cut(s)	254
Hin1II	CATG	2 cut(s)	156, 170
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	4 cut(s)	76, 214, 242, 301
Hpy188I	TCNGA	1 cut(s)	46
Hpy188III	TCNNGA	2 cut(s)	275, 293
Hpy8I	GTNNAC	4 cut(s)	76, 214, 242, 301
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	2 cut(s)	24, 354
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4V	TGCA	3 cut(s)	159, 174, 185
HpyF3I	CTNAG	2 cut(s)	208, 273
Hsp92II	CATG	2 cut(s)	156, 170
HspAI	GCGC	1 cut(s)	252
Kzo9I	GATC	1 cut(s)	41
LpnPI	CCDG	7 cut(s)	148, 148, 250, 260, 262, 275, 282
Lsp1109I	GCAGC	1 cut(s)	143
LweI	GCATC	2 cut(s)	172, 307
MaeIII	GTNAC	2 cut(s)	67, 332
MalI	GATC	1 cut(s)	43
MboI	GATC	1 cut(s)	41
MboII	GAAGA	1 cut(s)	135
MflI	RGATCY	1 cut(s)	41
MnlI	CCTC	4 cut(s)	21, 28, 41, 347
MspI	CCGG	1 cut(s)	135
NdeII	GATC	1 cut(s)	41
NlaIII	CATG	2 cut(s)	156, 170
NmeAIII	GCCGAG	1 cut(s)	12
NspI	RCATGY	1 cut(s)	170
PkrI	GCNGC	1 cut(s)	158
PspEI	GGTNACC	1 cut(s)	332
PspFI	CCCAGC	1 cut(s)	268
PsuI	RGATCY	1 cut(s)	41
RsaI	GTAC	1 cut(s)	202
RsaNI	GTAC	1 cut(s)	201
SatI	GCNGC	1 cut(s)	157
Sau3AI	GATC	1 cut(s)	41
SetI	ASST	5 cut(s)	69, 192, 274, 339, 346
SfaNI	GCATC	2 cut(s)	172, 307
SgrAI	CRCCGGYG	1 cut(s)	134
TaaI	ACNGT	1 cut(s)	73
TscAI	CASTG	1 cut(s)	235
TseI	GCWGC	1 cut(s)	156
TspDTI	ATGAA	1 cut(s)	209
TspRI	CASTG	1 cut(s)	235
XceI	RCATGY	1 cut(s)	170
XcmI	CCANNNNNNNNNTGG	1 cut(s)	159
XmiI	GTMKAC	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.