Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011298

Physical Location & Seq

Genomic Coordinates Reverse (-)

20710103 .. 20712473

Gene Structure 2371 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G50915.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGCAACTTTCTCTTATTTCCAAAACTACCCTCATTCCCTTCTTGATCCTCTTCTCTTCCCTACACCTCACTCCTCCATTAATCTCACTAGTTTCATCGATCAAAACCATCTCTATCCACTACCAAACATTTCCACAGTTGAAGACATTTCCTTTCTTGAATATAATGTTGACAAAACTGAAAACTCTGGTTCAGAGAAACTGGCCAACACAACCAAAACAGCAACCACCGGTTCTTCTTCCTGCGACCAGCTCAGCCACGGACCATCAGCCATCACCAACACCGGAAAAACCCGTGGGAGGAAGGCCAGAAACAGTAATAACTCCAAGGAAGGAGTAGAGGGAAGAAAAAGCAAAAAACAGAAGAGAGGAAGCAAAGAAGAGCCTCCAACAGATTACATTCACGTTCGAGCTAGAAGAGGCCAAGCTACTGATAGCCACAGCCTTGCTGAGAGGGTGAGAAGGGAAAAGATAAGTGAGCGGATGAGGACTCTGCAAAACCTTGTTCCGGGCTGTGATAAGGTAACAGGGAAGGCCCTCATGTTGGATGAGATTATAAATTATGTCCAGACCTTGCAGACTCAAGTTGAGTTTCTCTCAATGAAGCTAACTTCTATAAGTCCGGTGGTCTATGACTTTGGCTCCGACCTTGATGGCCTCATACTTCAATCTGAGATGGGTTCTCCAGAAGTAGGAACGTCTTTTACCAATGCAATGCCAACAACTACTCCTATCTTTCCTTCACTATTGGATAATTCTGTAGTTCCCACACATGCACAAGTTCAGGAAGAGGGAGAAGAAAGAGAGAACTTTGTAGACAGAAGTGGGTTCAACAACAACAACTTCTGTTCTTTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

286

Amino Acids

31.77

Weight (kDa)

6.01

Isoelectric Point (pI)

42.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	146 - 193	7.1e-07	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	151 - 195	3.4e-06	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50915 AT5G50915 AT5G50915 AT5G50915
fragaria_vesca	FvH4_5g09140 FvH4_5g09140
malus_domestica	MD06G1133200.v1.1 MD14G1149600.v1.1
prunus_persica	Prupe.5G144400_v2.0.a1
pyrus_communis	pycom06g12480 pycom14g12420
rosa_chinensis	RchiOBHm_Chr7g0189021
rosa_laevigata	RLG00000004638
rosa_roxburghii	Rroxscaffold_3G00265840
rosa_rugosa	Rorug06G0495700
rosa_samantha	Rh7AG100200 Rh7BG102700 Rh7CG104100 Rh7DG102200
rosa_wichuraiana	Rw7G008660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	557
AccBSI	CCGCTC	1 cut(s)	481
AccI	GTMKAC	1 cut(s)	816
AciI	CCGC	1 cut(s)	481
AclWI	GGATC	1 cut(s)	41
AcoI	YGGCCR	1 cut(s)	204
AfiI	CCNNNNNNNGG	4 cut(s)	300, 508, 544, 692
AgeI	ACCGGT	1 cut(s)	230
AgsI	TTSAA	4 cut(s)	143, 161, 668, 832
AhlI	ACTAGT	1 cut(s)	89
AluBI	AGCT	4 cut(s)	253, 413, 428, 607
AluI	AGCT	4 cut(s)	253, 413, 428, 607
AlwI	GGATC	1 cut(s)	41
AoxI	GGCC	5 cut(s)	204, 306, 421, 534, 655
AseI	ATTAAT	1 cut(s)	81
AsiGI	ACCGGT	1 cut(s)	230
AspS9I	GGNCC	2 cut(s)	263, 535
AsuC2I	CCSGG	1 cut(s)	510
AsuHPI	GGTGA	2 cut(s)	268, 469
AvaII	GGWCC	1 cut(s)	263
BalI	TGGCCA	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	150
BccI	CCATC	5 cut(s)	117, 274, 281, 647, 670
BcnI	CCSGG	1 cut(s)	510
BcuI	ACTAGT	1 cut(s)	89
BfaI	CTAG	2 cut(s)	90, 414
BfmI	CTRYAG	1 cut(s)	759
BlpI	GCTNAGC	1 cut(s)	254
Bme1390I	CCNGG	1 cut(s)	510
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	2 cut(s)	263, 535
BmiI	GGNNCC	1 cut(s)	643
BmrFI	CCNGG	1 cut(s)	510
BpiI	GAAGAC	1 cut(s)	150
BplI	GAGNNNNNCTC	2 cut(s)	581, 613
BpmI	CTGGAG	1 cut(s)	669
Bpu1102I	GCTNAGC	1 cut(s)	254
BpuEI	CTTGAG	1 cut(s)	567
BpuMI	CCSGG	1 cut(s)	510
Bsa29I	ATCGAT	1 cut(s)	99
BsaJI	CCNNGG	3 cut(s)	259, 295, 327
BsaWI	WCCGGW	3 cut(s)	230, 284, 622
BsaXI	ACNNNNNCTCC	4 cut(s)	626, 656, 712, 742
Bsc4I	CCNNNNNNNGG	4 cut(s)	300, 508, 544, 692
Bse118I	RCCGGY	1 cut(s)	230
Bse1I	ACTGG	1 cut(s)	207
Bse3DI	GCAATG	1 cut(s)	720
BseCI	ATCGAT	1 cut(s)	99
BseDI	CCNNGG	3 cut(s)	259, 295, 327
BseGI	GGATG	2 cut(s)	489, 553
BseLI	CCNNNNNNNGG	4 cut(s)	300, 508, 544, 692
BseMI	GCAATG	1 cut(s)	720
BseMII	CTCAG	3 cut(s)	268, 441, 663
BseNI	ACTGG	1 cut(s)	207
BseRI	GAGGAG	1 cut(s)	64
BshFI	GGCC	5 cut(s)	206, 308, 423, 536, 657
BshTI	ACCGGT	1 cut(s)	230
BshVI	ATCGAT	1 cut(s)	99
BsiSI	CCGG	4 cut(s)	231, 285, 509, 623
BslI	CCNNNNNNNGG	4 cut(s)	300, 508, 544, 692
BsnI	GGCC	5 cut(s)	206, 308, 423, 536, 657
Bsp143I	GATC	2 cut(s)	46, 100
Bsp1720I	GCTNAGC	1 cut(s)	254
BspACI	CCGC	1 cut(s)	481
BspANI	GGCC	5 cut(s)	206, 308, 423, 536, 657
BspCNI	CTCAG	3 cut(s)	267, 442, 664
BspDI	ATCGAT	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	643
BspPI	GGATC	1 cut(s)	41
BspQI	GCTCTTC	1 cut(s)	375
BsrBI	CCGCTC	1 cut(s)	481
BsrDI	GCAATG	1 cut(s)	720
BsrFI	RCCGGY	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	207
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	3 cut(s)	259, 295, 327
BssMI	GATC	2 cut(s)	46, 100
BssT1I	CCWWGG	1 cut(s)	327
Bst4CI	ACNGT	2 cut(s)	139, 317
Bst6I	CTCTTC	6 cut(s)	57, 62, 359, 375, 412, 783
BstDEI	CTNAG	3 cut(s)	254, 450, 672
BstDSI	CCRYGG	2 cut(s)	259, 295
BstF5I	GGATG	2 cut(s)	489, 553
BstKTI	GATC	2 cut(s)	49, 103
BstMBI	GATC	2 cut(s)	46, 100
BstNSI	RCATGY	1 cut(s)	776
BstSCI	CCNGG	1 cut(s)	508
BstSFI	CTRYAG	1 cut(s)	759
BstV2I	GAAGAC	1 cut(s)	150
Bsu15I	ATCGAT	1 cut(s)	99
BsuRI	GGCC	5 cut(s)	206, 308, 423, 536, 657
BsuTUI	ATCGAT	1 cut(s)	99
BtgI	CCRYGG	2 cut(s)	259, 295
BtsCI	GGATG	2 cut(s)	489, 553
Cfr10I	RCCGGY	1 cut(s)	230
Cfr13I	GGNCC	2 cut(s)	263, 535
ClaI	ATCGAT	1 cut(s)	99
CspAI	ACCGGT	1 cut(s)	230
CviAII	CATG	2 cut(s)	541, 773
DdeI	CTNAG	3 cut(s)	254, 450, 672
DpnI	GATC	2 cut(s)	48, 102
DpnII	GATC	2 cut(s)	46, 100
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	6 cut(s)	57, 62, 359, 375, 412, 783
EarI	CTCTTC	6 cut(s)	57, 62, 359, 375, 412, 783
Eco130I	CCWWGG	1 cut(s)	327
Eco47I	GGWCC	1 cut(s)	263
EcoO109I	RGGNCCY	1 cut(s)	535
EcoT14I	CCWWGG	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	327
FaeI	CATG	2 cut(s)	544, 776
FaiI	YATR	8 cut(s)	165, 542, 557, 564, 617, 633, 662, 774
FatI	CATG	2 cut(s)	540, 772
FblI	GTMKAC	1 cut(s)	816
FokI	GGATG	2 cut(s)	496, 560
FspBI	CTAG	2 cut(s)	90, 414
GsuI	CTGGAG	1 cut(s)	669
HaeIII	GGCC	5 cut(s)	206, 308, 423, 536, 657
HapII	CCGG	4 cut(s)	231, 285, 509, 623
Hin1II	CATG	2 cut(s)	544, 776
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	2 cut(s)	490, 580
HpaII	CCGG	4 cut(s)	231, 285, 509, 623
HphI	GGTGA	2 cut(s)	268, 469
Hpy166II	GTNNAC	2 cut(s)	172, 817
Hpy188I	TCNGA	3 cut(s)	196, 646, 673
Hpy188III	TCNNGA	5 cut(s)	44, 158, 568, 686, 785
Hpy8I	GTNNAC	2 cut(s)	172, 817
HpyAV	CCTTC	6 cut(s)	50, 298, 326, 456, 526, 750
HpyCH4III	ACNGT	2 cut(s)	139, 317
HpyCH4IV	ACGT	2 cut(s)	405, 698
HpyCH4V	TGCA	4 cut(s)	496, 577, 713, 776
HpyF3I	CTNAG	3 cut(s)	254, 450, 672
HpySE526I	ACGT	2 cut(s)	405, 698
Hsp92II	CATG	2 cut(s)	544, 776
Kzo9I	GATC	2 cut(s)	46, 100
LguI	GCTCTTC	1 cut(s)	375
LmnI	GCTCC	1 cut(s)	647
MaeI	CTAG	2 cut(s)	90, 414
MaeII	ACGT	2 cut(s)	405, 698
MaeIII	GTNAC	1 cut(s)	523
MalI	GATC	2 cut(s)	48, 102
MbiI	CCGCTC	1 cut(s)	481
MboI	GATC	2 cut(s)	46, 100
MlsI	TGGCCA	1 cut(s)	206
MluCI	AATT	2 cut(s)	559, 754
MluNI	TGGCCA	1 cut(s)	206
MlyI	GAGTC	2 cut(s)	484, 574
MmeI	TCCRAC	3 cut(s)	413, 525, 669
Mox20I	TGGCCA	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	206
MseI	TTAA	1 cut(s)	81
Msp20I	TGGCCA	1 cut(s)	206
MspI	CCGG	4 cut(s)	231, 285, 509, 623
MspR9I	CCNGG	1 cut(s)	510
NciI	CCSGG	1 cut(s)	510
NdeII	GATC	2 cut(s)	46, 100
NlaIII	CATG	2 cut(s)	544, 776
NlaIV	GGNNCC	1 cut(s)	643
NspI	RCATGY	1 cut(s)	776
PciSI	GCTCTTC	1 cut(s)	375
PinAI	ACCGGT	1 cut(s)	230
PleI	GAGTC	2 cut(s)	484, 574
PpsI	GAGTC	2 cut(s)	484, 574
PshBI	ATTAAT	1 cut(s)	81
PsiI	TTATAA	1 cut(s)	557
PspN4I	GGNNCC	1 cut(s)	643
PspPI	GGNCC	2 cut(s)	263, 535
PsrI	GAACNNNNNNTAC	2 cut(s)	688, 720
SapI	GCTCTTC	1 cut(s)	375
SaqAI	TTAA	1 cut(s)	81
Sau3AI	GATC	2 cut(s)	46, 100
Sau96I	GGNCC	2 cut(s)	263, 535
SchI	GAGTC	2 cut(s)	484, 574
ScrFI	CCNGG	1 cut(s)	510
SfcI	CTRYAG	1 cut(s)	759
SinI	GGWCC	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	582
SmoI	CTYRAG	1 cut(s)	582
SpeI	ACTAGT	1 cut(s)	89
Sse9I	AATT	2 cut(s)	559, 754
SsiI	CCGC	1 cut(s)	481
SspMI	CTAG	2 cut(s)	90, 414
StyD4I	CCNGG	1 cut(s)	508
StyI	CCWWGG	1 cut(s)	327
TaaI	ACNGT	2 cut(s)	139, 317
TaiI	ACGT	2 cut(s)	408, 701
TaqI	TCGA	2 cut(s)	99, 409
TasI	AATT	2 cut(s)	559, 754
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TspDTI	ATGAA	2 cut(s)	85, 617
TspGWI	ACGGA	1 cut(s)	276
VpaK11BI	GGWCC	1 cut(s)	263
VspI	ATTAAT	1 cut(s)	81
XceI	RCATGY	1 cut(s)	776
XmiI	GTMKAC	1 cut(s)	816
XspI	CTAG	2 cut(s)	90, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.