Rw7G008660

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0011298
Physical Location & Seq
Forward (+)
7942567 .. 7945128
2562 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G008660.1

Sequence Viewer

Length: 1041 bp
ATGGCAGCCTTTTCTTACCAACATGTACTCCACCACCCCTTTCTCTTTGACTCTATTTTCTTTCCAGGCACTCCTACCAGTACTAATAGCAACAACAACCATTTCTCTCAATCTCAATACCCATCTGAGCCTTTAGTTGAGCAAATGAATATTCCTGTTGAGAGTGCAAGAGTTGCCGAGAGCAGCTCATGTATTGACCAGAGCTCCACAAAGATTGCAACTTTTAGTGACAATGAGCCTTCTGTGACCAAAAAACAGAGCCCAGAGTCCTCAGCTGTGGTGGATAAGCTTGAGACTGGCGAGCAGGTTACTCAGAAAGTGATGACTCCCATGGAAAGGAAGAGAAGAACCAGAAATGGGTCATCACCCAATTCTGCTCAATCCAAGGTCAAGAAGCCAAAGAAAGCTGAAGAGGAAAAGAAGCCCAAAGCTGAAAAGAAAGAGCAAGTGAAAGCTGTACAAGAAGTGGAACCTCCAACAGGTTACATTCATGTTAGAGCAAGAAGGGGTCAAGCTACAGATAGCCATAGCCTTGCAGAGAGGGTAAGAAGAGAAAAAATCAGTGAGAGGATGAAGATGTTGCAAAGACTTGTTCCTGGTTGTGACAAGGTAACCGGAAGGGCTGTGATGTTGGATGAGATTATCAATTATGTTCAGTCCCTACAAAATCAAGTGGAGTTTCTCTCAATGAAGCTTGCTTCTGTGAATCCAATGTTCTATGACTTTGGACCAGACCTTGGTGATTTGATGGTCAAACAAGAGGCATCACCATTTTCAAGTGGACCACAATGCAGCCCAACGCAGCCAACAGATTTTGCTGATACCTCTACCAATTTTGTCACCACCACCACTGCCGCCACCACCAGCTTCACAGCGGCTACTAACAACTATCCTTTTCTGGATTCACTTCTACTTCAGCAATCGCAGAGGCCGACTGCCTTCCATCAGGACAGTGAGAGCCCATTGTGGGATGTGGAAGATCAAAGACAAAGCTTTCTTAATCCATCTGGGTTCAGCAACAACTTGTGTTCTTTCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

346

Amino Acids

38.63

Weight (kDa)

6.41

Isoelectric Point (pI)

59.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 175 - 222 2.7e-06 Helix-loop-helix DNA-binding domain
bHLH_SAC51 PF23173 180 - 224 4.7e-07 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011298)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50915 AT5G50915 AT5G50915 AT5G50915
fragaria_vesca FvH4_5g09140 FvH4_5g09140
malus_domestica MD06G1133200.v1.1 MD14G1149600.v1.1
prunus_persica Prupe.5G144400_v2.0.a1
pyrus_communis pycom06g12480 pycom14g12420
rosa_chinensis RchiOBHm_Chr7g0189021
rosa_laevigata RLG00000004638
rosa_roxburghii Rroxscaffold_3G00265840
rosa_rugosa Rorug06G0495700
rosa_samantha Rh7AG100200 Rh7BG102700 Rh7CG104100 Rh7DG102200
rosa_wichuraiana Rw7G008660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 295
AccB7I CCANNNNNTGG 1 cut(s) 737
AciI CCGC 2 cut(s) 855, 875
AcuI CTGAAG 2 cut(s) 429, 899
AfaI GTAC 3 cut(s) 27, 82, 459
AfiI CCNNNNNNNGG 5 cut(s) 336, 357, 479, 737, 967
AflIII ACRYGT 1 cut(s) 22
AgsI TTSAA 2 cut(s) 777, 1036
AjnI CCWGG 2 cut(s) 64, 595
Alw21I GWGCWC 1 cut(s) 206
Alw26I GTCTC 1 cut(s) 287
AoxI GGCC 1 cut(s) 929
ApeKI GCWGC 4 cut(s) 5, 183, 792, 802
AspS9I GGNCC 2 cut(s) 728, 782
AsuHPI GGTGA 4 cut(s) 357, 752, 759, 832
AvaII GGWCC 2 cut(s) 728, 782
BanII GRGCYC 3 cut(s) 206, 263, 962
Bbv12I GWGCWC 1 cut(s) 206
BbvCI CCTCAGC 1 cut(s) 271
BbvI GCAGC 4 cut(s) 17, 195, 804, 814
BccI CCATC 4 cut(s) 130, 742, 951, 1012
BciT130I CCWGG 2 cut(s) 66, 597
BcoDI GTCTC 1 cut(s) 287
BfmI CTRYAG 1 cut(s) 516
BfuAI ACCTGC 1 cut(s) 295
BisI GCNGC 6 cut(s) 6, 184, 793, 803, 855, 876
BlsI GCNGC 6 cut(s) 7, 185, 794, 804, 856, 877
BmcAI AGTACT 1 cut(s) 82
Bme1390I CCNGG 2 cut(s) 66, 597
Bme18I GGWCC 2 cut(s) 728, 782
BmgT120I GGNCC 2 cut(s) 728, 782
BmiI GGNNCC 1 cut(s) 471
BmrFI CCNGG 2 cut(s) 66, 597
BmsI GCATC 1 cut(s) 773
BplI GAGNNNNNCTC 4 cut(s) 170, 202, 668, 700
Bpu10I CCTNAGC 1 cut(s) 271
BpuEI CTTGAG 1 cut(s) 311
BsaJI CCNNGG 3 cut(s) 330, 384, 736
BsaWI WCCGGW 1 cut(s) 614
BsaXI ACNNNNNCTCC 4 cut(s) 12, 42, 188, 218
Bsc4I CCNNNNNNNGG 5 cut(s) 336, 357, 479, 737, 967
Bse1I ACTGG 2 cut(s) 78, 301
BseBI CCWGG 2 cut(s) 66, 597
BseDI CCNNGG 3 cut(s) 330, 384, 736
BseGI GGATG 3 cut(s) 576, 640, 976
BseLI CCNNNNNNNGG 5 cut(s) 336, 357, 479, 737, 967
BseMII CTCAG 3 cut(s) 117, 285, 326
BseNI ACTGG 2 cut(s) 78, 301
BseXI GCAGC 4 cut(s) 17, 195, 804, 814
BshFI GGCC 1 cut(s) 931
BsiHKAI GWGCWC 1 cut(s) 206
BsiSI CCGG 1 cut(s) 615
BslFI GGGAC 1 cut(s) 643
BslI CCNNNNNNNGG 5 cut(s) 336, 357, 479, 737, 967
BsmAI GTCTC 1 cut(s) 287
BsmFI GGGAC 1 cut(s) 643
BsnI GGCC 1 cut(s) 931
Bsp1286I GDGCHC 3 cut(s) 206, 263, 962
Bsp1407I TGTACA 1 cut(s) 457
Bsp143I GATC 1 cut(s) 979
Bsp19I CCATGG 1 cut(s) 330
BspACI CCGC 2 cut(s) 855, 875
BspANI GGCC 1 cut(s) 931
BspCNI CTCAG 3 cut(s) 118, 284, 325
BspLI GGNNCC 1 cut(s) 471
BspMI ACCTGC 1 cut(s) 295
BsrGI TGTACA 1 cut(s) 457
BsrI ACTGG 2 cut(s) 78, 301
BssECI CCNNGG 3 cut(s) 330, 384, 736
BssMI GATC 1 cut(s) 979
BssT1I CCWWGG 3 cut(s) 330, 384, 736
Bst2UI CCWGG 2 cut(s) 66, 597
Bst4CI ACNGT 1 cut(s) 953
Bst6I CTCTTC 3 cut(s) 335, 405, 544
BstAPI GCANNNNNTGC 1 cut(s) 173
BstAUI TGTACA 1 cut(s) 457
BstC8I GCNNGC 2 cut(s) 302, 696
BstDEI CTNAG 3 cut(s) 126, 271, 312
BstDSI CCRYGG 1 cut(s) 330
BstEII GGTNACC 1 cut(s) 610
BstENI CCTNNNNNAGG 1 cut(s) 477
BstF5I GGATG 3 cut(s) 576, 640, 976
BstKTI GATC 1 cut(s) 982
BstMAI GTCTC 1 cut(s) 287
BstMBI GATC 1 cut(s) 979
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstNI CCWGG 2 cut(s) 66, 597
BstNSI RCATGY 1 cut(s) 26
BstPI GGTNACC 1 cut(s) 610
BstSCI CCNGG 2 cut(s) 64, 595
BstSFI CTRYAG 1 cut(s) 516
BstV1I GCAGC 4 cut(s) 17, 195, 804, 814
BsuRI GGCC 1 cut(s) 931
BtgI CCRYGG 1 cut(s) 330
BtsCI GGATG 3 cut(s) 576, 640, 976
BtsI GCAGTG 1 cut(s) 849
BtsIMutI CAGTG 3 cut(s) 568, 849, 958
BveI ACCTGC 1 cut(s) 295
Cac8I GCNNGC 2 cut(s) 302, 696
Cfr13I GGNCC 2 cut(s) 728, 782
Csp6I GTAC 3 cut(s) 26, 81, 458
CspCI CAANNNNNGTGG 2 cut(s) 196, 231
CviAII CATG 4 cut(s) 23, 189, 331, 491
CviQI GTAC 3 cut(s) 26, 81, 458
DdeI CTNAG 3 cut(s) 126, 271, 312
DpnI GATC 1 cut(s) 981
DpnII GATC 1 cut(s) 979
Eam1104I CTCTTC 3 cut(s) 335, 405, 544
EarI CTCTTC 3 cut(s) 335, 405, 544
Ecl136II GAGCTC 1 cut(s) 204
Eco130I CCWWGG 3 cut(s) 330, 384, 736
Eco24I GRGCYC 3 cut(s) 206, 263, 962
Eco47I GGWCC 2 cut(s) 728, 782
Eco53kI GAGCTC 1 cut(s) 204
Eco57I CTGAAG 2 cut(s) 429, 899
Eco91I GGTNACC 1 cut(s) 610
EcoICRI GAGCTC 1 cut(s) 204
EcoNI CCTNNNNNAGG 1 cut(s) 477
EcoO65I GGTNACC 1 cut(s) 610
EcoRII CCWGG 2 cut(s) 64, 595
EcoT14I CCWWGG 3 cut(s) 330, 384, 736
EcoT38I GRGCYC 3 cut(s) 206, 263, 962
ErhI CCWWGG 3 cut(s) 330, 384, 736
FaeI CATG 4 cut(s) 26, 192, 334, 494
FaiI YATR 7 cut(s) 24, 190, 332, 492, 528, 651, 720
FaqI GGGAC 1 cut(s) 643
FatI CATG 4 cut(s) 22, 188, 330, 490
Fnu4HI GCNGC 6 cut(s) 6, 184, 793, 803, 855, 876
FokI GGATG 3 cut(s) 583, 647, 983
FriOI GRGCYC 3 cut(s) 206, 263, 962
Fsp4HI GCNGC 6 cut(s) 6, 184, 793, 803, 855, 876
GluI GCNGC 6 cut(s) 6, 184, 793, 803, 855, 876
HaeIII GGCC 1 cut(s) 931
HapII CCGG 1 cut(s) 615
Hin1II CATG 4 cut(s) 26, 192, 334, 494
HindIII AAGCTT 3 cut(s) 287, 692, 991
HinfI GANTC 5 cut(s) 50, 266, 325, 706, 902
HpaII CCGG 1 cut(s) 615
HphI GGTGA 4 cut(s) 357, 752, 759, 832
Hpy166II GTNNAC 1 cut(s) 782
Hpy188I TCNGA 2 cut(s) 127, 315
Hpy188III TCNNGA 3 cut(s) 391, 899, 947
Hpy8I GTNNAC 1 cut(s) 782
HpyAV CCTTC 4 cut(s) 249, 498, 612, 949
HpyCH4III ACNGT 1 cut(s) 953
HpyCH4V TGCA 5 cut(s) 167, 218, 536, 583, 792
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpyF3I CTNAG 3 cut(s) 126, 271, 312
Hsp92II CATG 4 cut(s) 26, 192, 334, 494
Kzo9I GATC 1 cut(s) 979
LmnI GCTCC 1 cut(s) 209
Lsp1109I GCAGC 4 cut(s) 17, 195, 804, 814
LweI GCATC 1 cut(s) 773
MaeIII GTNAC 7 cut(s) 227, 244, 307, 482, 602, 610, 838
MalI GATC 1 cut(s) 981
MboI GATC 1 cut(s) 979
MboII GAAGA 6 cut(s) 352, 357, 422, 561, 586, 989
MhlI GDGCHC 3 cut(s) 206, 263, 962
MluCI AATT 4 cut(s) 370, 646, 832, 1036
MlyI GAGTC 3 cut(s) 44, 275, 319
MmeI TCCRAC 2 cut(s) 500, 612
MnlI CCTC 8 cut(s) 280, 406, 483, 534, 561, 754, 835, 921
MseI TTAA 2 cut(s) 999, 1039
MspA1I CMGCKG 2 cut(s) 275, 875
MspI CCGG 1 cut(s) 615
MspR9I CCNGG 2 cut(s) 66, 597
MvaI CCWGG 2 cut(s) 66, 597
MwoI GCNNNNNNNGC 1 cut(s) 173
NcoI CCATGG 1 cut(s) 330
NdeII GATC 1 cut(s) 979
NlaIII CATG 4 cut(s) 26, 192, 334, 494
NlaIV GGNNCC 1 cut(s) 471
NmeAIII GCCGAG 1 cut(s) 202
NmuCI GTSAC 4 cut(s) 227, 244, 602, 838
NspI RCATGY 1 cut(s) 26
PciI ACATGT 1 cut(s) 22
PcsI WCGNNNNNNNCGW 1 cut(s) 929
PfeI GAWTC 2 cut(s) 706, 902
PflMI CCANNNNNTGG 1 cut(s) 737
PkrI GCNGC 6 cut(s) 7, 185, 794, 804, 856, 877
PleI GAGTC 3 cut(s) 44, 274, 319
PpsI GAGTC 3 cut(s) 44, 274, 319
PscI ACATGT 1 cut(s) 22
Psp124BI GAGCTC 1 cut(s) 206
Psp6I CCWGG 2 cut(s) 64, 595
PspEI GGTNACC 1 cut(s) 610
PspGI CCWGG 2 cut(s) 64, 595
PspN4I GGNNCC 1 cut(s) 471
PspPI GGNCC 2 cut(s) 728, 782
PvuII CAGCTG 1 cut(s) 275
RsaI GTAC 3 cut(s) 27, 82, 459
RsaNI GTAC 3 cut(s) 26, 81, 458
SacI GAGCTC 1 cut(s) 206
SaqAI TTAA 2 cut(s) 999, 1039
SatI GCNGC 6 cut(s) 6, 184, 793, 803, 855, 876
Sau3AI GATC 1 cut(s) 979
Sau96I GGNCC 2 cut(s) 728, 782
ScaI AGTACT 1 cut(s) 82
SchI GAGTC 3 cut(s) 44, 275, 319
ScrFI CCNGG 2 cut(s) 66, 597
SduI GDGCHC 3 cut(s) 206, 263, 962
SfaNI GCATC 1 cut(s) 773
SfcI CTRYAG 1 cut(s) 516
SinI GGWCC 2 cut(s) 728, 782
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 4 cut(s) 370, 646, 832, 1036
SsiI CCGC 2 cut(s) 855, 875
SspI AATATT 1 cut(s) 151
SstI GAGCTC 1 cut(s) 206
StyD4I CCNGG 2 cut(s) 64, 595
StyI CCWWGG 3 cut(s) 330, 384, 736
TaaI ACNGT 1 cut(s) 953
TasI AATT 4 cut(s) 370, 646, 832, 1036
TatI WGTACW 3 cut(s) 25, 80, 457
TauI GCSGC 2 cut(s) 857, 878
TfiI GAWTC 2 cut(s) 706, 902
Tru1I TTAA 2 cut(s) 999, 1039
Tru9I TTAA 2 cut(s) 999, 1039
TscAI CASTG 3 cut(s) 568, 856, 958
TseFI GTSAC 4 cut(s) 227, 244, 602, 838
TseI GCWGC 4 cut(s) 5, 183, 792, 802
Tsp45I GTSAC 4 cut(s) 227, 244, 602, 838
TspDTI ATGAA 4 cut(s) 161, 479, 587, 704
TspRI CASTG 3 cut(s) 568, 856, 958
Van91I CCANNNNNTGG 1 cut(s) 737
VpaK11BI GGWCC 2 cut(s) 728, 782
XagI CCTNNNNNAGG 1 cut(s) 477
XceI RCATGY 1 cut(s) 26
ZrmI AGTACT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.