pycom06g12480

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0011298
Physical Location & Seq
Forward (+)
17581241 .. 17582715
1475 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g12480.1

Sequence Viewer

Length: 690 bp
ATGGGCAAGAAGAGAAAATCCAGAACTGGATCATCCTTCAATTCTGCTCAATCCAAGGGTACTAAAGAGCAGAAGGGAAAGAAGCAAAAGAAGATTGATGGCGGTACCAAGAAAGATGAGGAAAAGAAGATTAAATCAGATGAAGAAGACCAGGTGAAAGCAAGAGAAGGACCTCCAACTGGCTACATTCATGTTAGAGCAAGGAGGGGTCAGGCTACAGATAGTCACAGCCTTGCAGAAAGGGTAAGAAGACAGAAAATTAGTGAGAGGATGAAGATGTTGCAAAGACTTGTTCCAGGCTGTGACAAGATAACTGGAAGGGCAGTCATGCTGGATGAAATTATCAATTATGTTCAGTCCCTACAAAATCAAGTGGAGTTCCTCTCAATGAAACTTGATTCTTCGAATCCAATGTTCTACGACTTTGGAATGGACCTTGGTGCTTTGTTGGTCAAACCAGAGAGATTGTGTAGCATGGAATCACCATATCAATCTGTGCAAACACAGCCAACACCTTTTGCTGATACATCCATCGACATCACCGCCACCACTGCCGCTGCGGCTGCCGCCTTCACCACAAATAACAACTGTCCTTTTCTAGACAGTTCAGCTTCACTTCTACTTCAAAGGCCAAATACCTTCTCTCAGGACAGTGAGAGCTTGTTGTGGGATGTGGAAGATCTTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

230

Amino Acids

25.55

Weight (kDa)

8.96

Isoelectric Point (pI)

50.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 75 - 122 9.3e-07 Helix-loop-helix DNA-binding domain
bHLH_SAC51 PF23173 80 - 124 2.8e-07 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011298)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50915 AT5G50915 AT5G50915 AT5G50915
fragaria_vesca FvH4_5g09140 FvH4_5g09140
malus_domestica MD06G1133200.v1.1 MD14G1149600.v1.1
prunus_persica Prupe.5G144400_v2.0.a1
pyrus_communis pycom06g12480 pycom14g12420
rosa_chinensis RchiOBHm_Chr7g0189021
rosa_laevigata RLG00000004638
rosa_roxburghii Rroxscaffold_3G00265840
rosa_rugosa Rorug06G0495700
rosa_samantha Rh7AG100200 Rh7BG102700 Rh7CG104100 Rh7DG102200
rosa_wichuraiana Rw7G008660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 104
AccB1I GGYRCC 1 cut(s) 104
AciI CCGC 5 cut(s) 102, 543, 555, 560, 567
AclWI GGATC 1 cut(s) 37
AfaI GTAC 2 cut(s) 61, 106
AfiI CCNNNNNNNGG 1 cut(s) 179
AgsI TTSAA 2 cut(s) 40, 626
AjnI CCWGG 2 cut(s) 150, 295
AluBI AGCT 2 cut(s) 611, 660
AluI AGCT 2 cut(s) 611, 660
AlwI GGATC 1 cut(s) 37
AoxI GGCC 1 cut(s) 629
ApeKI GCWGC 2 cut(s) 557, 563
Asp718I GGTACC 1 cut(s) 104
AspS9I GGNCC 2 cut(s) 170, 433
AsuHPI GGTGA 4 cut(s) 166, 474, 532, 565
AsuII TTCGAA 1 cut(s) 404
AvaII GGWCC 2 cut(s) 170, 433
BanI GGYRCC 1 cut(s) 104
BbsI GAAGAC 2 cut(s) 153, 256
BbvI GCAGC 2 cut(s) 544, 550
BccI CCATC 2 cut(s) 92, 539
BciT130I CCWGG 2 cut(s) 152, 297
BfaI CTAG 1 cut(s) 599
BfmI CTRYAG 1 cut(s) 216
BglI GCCNNNNNGGC 1 cut(s) 560
BglII AGATCT 1 cut(s) 679
BisI GCNGC 5 cut(s) 555, 558, 561, 564, 567
BlsI GCNGC 5 cut(s) 556, 559, 562, 565, 568
Bme1390I CCNGG 2 cut(s) 152, 297
Bme18I GGWCC 2 cut(s) 170, 433
BmgT120I GGNCC 2 cut(s) 170, 433
BmiI GGNNCC 1 cut(s) 106
BmrFI CCNGG 2 cut(s) 152, 297
BpiI GAAGAC 2 cut(s) 153, 256
BplI GAGNNNNNCTC 2 cut(s) 368, 400
Bpu14I TTCGAA 1 cut(s) 404
BsaJI CCNNGG 2 cut(s) 54, 436
Bsc4I CCNNNNNNNGG 1 cut(s) 179
Bse1I ACTGG 3 cut(s) 31, 184, 319
BseBI CCWGG 2 cut(s) 152, 297
BseDI CCNNGG 2 cut(s) 54, 436
BseGI GGATG 5 cut(s) 32, 276, 340, 527, 676
BseLI CCNNNNNNNGG 1 cut(s) 179
BseMII CTCAG 1 cut(s) 659
BseNI ACTGG 3 cut(s) 31, 184, 319
BseXI GCAGC 2 cut(s) 544, 550
BshFI GGCC 1 cut(s) 631
BshNI GGYRCC 1 cut(s) 104
BslFI GGGAC 1 cut(s) 343
BslI CCNNNNNNNGG 1 cut(s) 179
BsmFI GGGAC 1 cut(s) 343
BsnI GGCC 1 cut(s) 631
Bsp119I TTCGAA 1 cut(s) 404
Bsp143I GATC 2 cut(s) 29, 679
BspACI CCGC 5 cut(s) 102, 543, 555, 560, 567
BspANI GGCC 1 cut(s) 631
BspCNI CTCAG 1 cut(s) 658
BspLI GGNNCC 1 cut(s) 106
BspPI GGATC 1 cut(s) 37
BspT104I TTCGAA 1 cut(s) 404
BspT107I GGYRCC 1 cut(s) 104
BsrI ACTGG 3 cut(s) 31, 184, 319
BssECI CCNNGG 2 cut(s) 54, 436
BssMI GATC 2 cut(s) 29, 679
BssT1I CCWWGG 2 cut(s) 54, 436
Bst2UI CCWGG 2 cut(s) 152, 297
Bst4CI ACNGT 3 cut(s) 590, 605, 653
Bst6I CTCTTC 1 cut(s) 5
BstBI TTCGAA 1 cut(s) 404
BstDEI CTNAG 1 cut(s) 645
BstF5I GGATG 5 cut(s) 32, 276, 340, 527, 676
BstKTI GATC 2 cut(s) 32, 682
BstMBI GATC 2 cut(s) 29, 679
BstMWI GCNNNNNNNGC 5 cut(s) 505, 551, 560, 563, 566
BstNI CCWGG 2 cut(s) 152, 297
BstSCI CCNGG 2 cut(s) 150, 295
BstSFI CTRYAG 1 cut(s) 216
BstV1I GCAGC 2 cut(s) 544, 550
BstV2I GAAGAC 2 cut(s) 153, 256
BstX2I RGATCY 1 cut(s) 679
BstYI RGATCY 1 cut(s) 679
BsuRI GGCC 1 cut(s) 631
BtsCI GGATG 5 cut(s) 32, 276, 340, 527, 676
BtsI GCAGTG 1 cut(s) 549
BtsIMutI CAGTG 2 cut(s) 549, 658
Cfr13I GGNCC 2 cut(s) 170, 433
CsiI ACCWGGT 1 cut(s) 150
Csp6I GTAC 2 cut(s) 60, 105
CviAII CATG 3 cut(s) 191, 328, 475
CviJI RGCY 9 cut(s) 183, 215, 231, 300, 508, 563, 611, 631, 660
CviKI_1 RGCY 9 cut(s) 183, 215, 231, 300, 508, 563, 611, 631, 660
CviQI GTAC 2 cut(s) 60, 105
DdeI CTNAG 1 cut(s) 645
DpnI GATC 2 cut(s) 31, 681
DpnII GATC 2 cut(s) 29, 679
Eam1104I CTCTTC 1 cut(s) 5
EarI CTCTTC 1 cut(s) 5
Eco130I CCWWGG 2 cut(s) 54, 436
Eco47I GGWCC 2 cut(s) 170, 433
EcoO109I RGGNCCY 1 cut(s) 170
EcoRII CCWGG 2 cut(s) 150, 295
EcoT14I CCWWGG 2 cut(s) 54, 436
ErhI CCWWGG 2 cut(s) 54, 436
FaeI CATG 3 cut(s) 194, 331, 478
FaiI YATR 5 cut(s) 192, 329, 351, 476, 487
FaqI GGGAC 1 cut(s) 343
FatI CATG 3 cut(s) 190, 327, 474
Fnu4HI GCNGC 5 cut(s) 555, 558, 561, 564, 567
FokI GGATG 5 cut(s) 19, 283, 347, 514, 683
Fsp4HI GCNGC 5 cut(s) 555, 558, 561, 564, 567
FspBI CTAG 1 cut(s) 599
GluI GCNGC 5 cut(s) 555, 558, 561, 564, 567
HaeIII GGCC 1 cut(s) 631
Hin1II CATG 3 cut(s) 194, 331, 478
HinfI GANTC 3 cut(s) 398, 406, 479
HphI GGTGA 4 cut(s) 166, 474, 532, 565
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 3 cut(s) 21, 599, 647
HpyAV CCTTC 6 cut(s) 46, 67, 161, 312, 580, 649
HpyCH4III ACNGT 3 cut(s) 590, 605, 653
HpyCH4V TGCA 3 cut(s) 236, 283, 499
HpyF10VI GCNNNNNNNGC 5 cut(s) 505, 551, 560, 563, 566
HpyF3I CTNAG 1 cut(s) 645
Hsp92II CATG 3 cut(s) 194, 331, 478
KpnI GGTACC 1 cut(s) 108
Kzo9I GATC 2 cut(s) 29, 679
Lsp1109I GCAGC 2 cut(s) 544, 550
MabI ACCWGGT 1 cut(s) 150
MaeI CTAG 1 cut(s) 599
MaeIII GTNAC 2 cut(s) 224, 302
MalI GATC 2 cut(s) 31, 681
MboI GATC 2 cut(s) 29, 679
MboII GAAGA 9 cut(s) 22, 103, 139, 155, 158, 261, 286, 393, 689
MflI RGATCY 1 cut(s) 679
MluCI AATT 4 cut(s) 40, 258, 339, 346
MmeI TCCRAC 1 cut(s) 200
MnlI CCTC 5 cut(s) 112, 183, 198, 261, 392
MseI TTAA 1 cut(s) 132
MspA1I CMGCKG 1 cut(s) 557
MspR9I CCNGG 2 cut(s) 152, 297
MvaI CCWGG 2 cut(s) 152, 297
MwoI GCNNNNNNNGC 5 cut(s) 505, 551, 560, 563, 566
NdeII GATC 2 cut(s) 29, 679
NlaIII CATG 3 cut(s) 194, 331, 478
NlaIV GGNNCC 1 cut(s) 106
NmuCI GTSAC 2 cut(s) 224, 302
NspV TTCGAA 1 cut(s) 404
PfeI GAWTC 3 cut(s) 398, 406, 479
PkrI GCNGC 5 cut(s) 556, 559, 562, 565, 568
PpuMI RGGWCCY 1 cut(s) 170
Psp5II RGGWCCY 1 cut(s) 170
Psp6I CCWGG 2 cut(s) 150, 295
PspGI CCWGG 2 cut(s) 150, 295
PspN4I GGNNCC 1 cut(s) 106
PspPI GGNCC 2 cut(s) 170, 433
PspPPI RGGWCCY 1 cut(s) 170
PsuI RGATCY 1 cut(s) 679
RsaI GTAC 2 cut(s) 61, 106
RsaNI GTAC 2 cut(s) 60, 105
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 5 cut(s) 555, 558, 561, 564, 567
Sau3AI GATC 2 cut(s) 29, 679
Sau96I GGNCC 2 cut(s) 170, 433
ScrFI CCNGG 2 cut(s) 152, 297
SetI ASST 7 cut(s) 156, 175, 438, 517, 613, 641, 662
SexAI ACCWGGT 1 cut(s) 150
SfcI CTRYAG 1 cut(s) 216
SfuI TTCGAA 1 cut(s) 404
SinI GGWCC 2 cut(s) 170, 433
Sse9I AATT 4 cut(s) 40, 258, 339, 346
SsiI CCGC 5 cut(s) 102, 543, 555, 560, 567
SspMI CTAG 1 cut(s) 599
StyD4I CCNGG 2 cut(s) 150, 295
StyI CCWWGG 2 cut(s) 54, 436
TaaI ACNGT 3 cut(s) 590, 605, 653
TaqI TCGA 2 cut(s) 404, 534
TasI AATT 4 cut(s) 40, 258, 339, 346
TauI GCSGC 3 cut(s) 557, 563, 569
TfiI GAWTC 3 cut(s) 398, 406, 479
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 2 cut(s) 556, 658
TseFI GTSAC 2 cut(s) 224, 302
TseI GCWGC 2 cut(s) 557, 563
Tsp45I GTSAC 2 cut(s) 224, 302
TspDTI ATGAA 5 cut(s) 156, 179, 287, 351, 404
TspRI CASTG 2 cut(s) 556, 658
VpaK11BI GGWCC 2 cut(s) 170, 433
XbaI TCTAGA 1 cut(s) 598
XspI CTAG 1 cut(s) 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.