Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G50915 AT5G50915 AT5G50915 AT5G50915 |
| fragaria_vesca | FvH4_5g09140 FvH4_5g09140 |
| malus_domestica | MD06G1133200.v1.1 MD14G1149600.v1.1 |
| prunus_persica | Prupe.5G144400_v2.0.a1 |
| pyrus_communis | pycom06g12480 pycom14g12420 |
| rosa_chinensis | RchiOBHm_Chr7g0189021 |
| rosa_laevigata | RLG00000004638 |
| rosa_roxburghii | Rroxscaffold_3G00265840 |
| rosa_rugosa | Rorug06G0495700 |
| rosa_samantha | Rh7AG100200 Rh7BG102700 Rh7CG104100 Rh7DG102200 |
| rosa_wichuraiana | Rw7G008660 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 167 |
| Acc65I | GGTACC | 1 cut(s) | 2495 |
| AccB1I | GGYRCC | 2 cut(s) | 2422, 2495 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2446, 2801 |
| AccI | GTMKAC | 1 cut(s) | 2265 |
| AccII | CGCG | 1 cut(s) | 833 |
| AclI | AACGTT | 1 cut(s) | 2931 |
| AclWI | GGATC | 6 cut(s) | 843, 1734, 1755, 1768, 2013, 2527 |
| AcoI | YGGCCR | 7 cut(s) | 315, 708, 1095, 1182, 1811, 2792, 2893 |
| AcsI | RAATTY | 3 cut(s) | 1551, 1816, 2463 |
| AcuI | CTGAAG | 4 cut(s) | 1317, 2156, 2169, 2957 |
| AcyI | GRCGYC | 1 cut(s) | 971 |
| AfeI | AGCGCT | 2 cut(s) | 44, 2630 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 1943, 2375, 2393, 2446, 2459, 2801, 2968, 3056 |
| AflII | CTTAAG | 1 cut(s) | 839 |
| AflIII | ACRYGT | 1 cut(s) | 3061 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2980 |
| AjiI | CACGTC | 1 cut(s) | 3062 |
| AjnI | CCWGG | 5 cut(s) | 579, 1092, 1126, 2386, 2800 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2402, 2434 |
| Alw21I | GWGCWC | 4 cut(s) | 13, 86, 444, 2947 |
| Alw26I | GTCTC | 4 cut(s) | 1579, 1634, 2487, 2967 |
| AlwI | GGATC | 6 cut(s) | 843, 1734, 1755, 1768, 2013, 2527 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 2801, 3116, 3143 |
| Ama87I | CYCGRG | 2 cut(s) | 2311, 2997 |
| Aor51HI | AGCGCT | 2 cut(s) | 44, 2630 |
| ApoI | RAATTY | 3 cut(s) | 1551, 1816, 2463 |
| Asp718I | GGTACC | 1 cut(s) | 2495 |
| AspLEI | GCGC | 4 cut(s) | 45, 168, 1174, 2631 |
| AspS9I | GGNCC | 6 cut(s) | 231, 1076, 1292, 2384, 2396, 2777 |
| AsuC2I | CCSGG | 9 cut(s) | 29, 214, 229, 894, 1008, 2312, 2313, 2998, 2999 |
| AsuII | TTCGAA | 1 cut(s) | 3038 |
| AvaI | CYCGRG | 2 cut(s) | 2311, 2997 |
| AvaII | GGWCC | 6 cut(s) | 231, 1076, 1292, 2384, 2396, 2777 |
| BaeGI | GKGCMC | 1 cut(s) | 369 |
| BalI | TGGCCA | 5 cut(s) | 710, 1097, 1184, 2794, 2895 |
| BamHI | GGATCC | 1 cut(s) | 1760 |
| BanI | GGYRCC | 2 cut(s) | 2422, 2495 |
| BanII | GRGCYC | 2 cut(s) | 86, 2947 |
| BbsI | GAAGAC | 3 cut(s) | 96, 147, 749 |
| Bbv12I | GWGCWC | 4 cut(s) | 13, 86, 444, 2947 |
| BbvCI | CCTCAGC | 1 cut(s) | 1857 |
| BceAI | ACGGC | 2 cut(s) | 224, 352 |
| BciT130I | CCWGG | 5 cut(s) | 581, 1094, 1128, 2388, 2802 |
| BciVI | GTATCC | 2 cut(s) | 900, 2199 |
| BclI | TGATCA | 2 cut(s) | 633, 1537 |
| BcnI | CCSGG | 9 cut(s) | 29, 214, 229, 894, 1008, 2312, 2313, 2998, 2999 |
| BcoDI | GTCTC | 4 cut(s) | 1579, 1634, 2487, 2967 |
| BfaI | CTAG | 2 cut(s) | 798, 2061 |
| BfmI | CTRYAG | 1 cut(s) | 1845 |
| BfoI | RGCGCY | 2 cut(s) | 46, 2632 |
| BfrI | CTTAAG | 1 cut(s) | 839 |
| BfuI | GTATCC | 2 cut(s) | 900, 2199 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 245 |
| BglII | AGATCT | 1 cut(s) | 2229 |
| Bme18I | GGWCC | 6 cut(s) | 231, 1076, 1292, 2384, 2396, 2777 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2980 |
| BmeT110I | CYCGRG | 2 cut(s) | 2311, 2997 |
| BmgBI | CACGTC | 1 cut(s) | 3062 |
| BmgT120I | GGNCC | 6 cut(s) | 231, 1076, 1292, 2384, 2396, 2777 |
| BmiI | GGNNCC | 9 cut(s) | 688, 1762, 2397, 2424, 2451, 2497, 2569, 2674, 3029 |
| BmrI | ACTGGG | 2 cut(s) | 559, 1920 |
| BmuI | ACTGGG | 2 cut(s) | 559, 1920 |
| BpiI | GAAGAC | 3 cut(s) | 96, 147, 749 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 71, 103 |
| BpmI | CTGGAG | 1 cut(s) | 1974 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1245, 1857, 2109 |
| Bpu14I | TTCGAA | 1 cut(s) | 3038 |
| BpuEI | CTTGAG | 6 cut(s) | 458, 626, 803, 1089, 1492, 2722 |
| BpuMI | CCSGG | 9 cut(s) | 29, 214, 229, 894, 1008, 2312, 2313, 2998, 2999 |
| Bsa29I | ATCGAT | 3 cut(s) | 354, 374, 389 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1536 |
| BsaHI | GRCGYC | 1 cut(s) | 971 |
| BsaI | GGTCTC | 1 cut(s) | 1634 |
| BsaJI | CCNNGG | 9 cut(s) | 705, 831, 893, 1524, 2311, 2513, 2571, 2659, 2997 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 2247, 2277, 2316, 2346 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 1943, 2375, 2393, 2446, 2459, 2801, 2968, 3056 |
| Bse1I | ACTGG | 7 cut(s) | 208, 565, 652, 1802, 1915, 2461, 2795 |
| Bse3DI | GCAATG | 4 cut(s) | 207, 234, 1928, 2023 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1536 |
| BseBI | CCWGG | 5 cut(s) | 581, 1094, 1128, 2388, 2802 |
| BseCI | ATCGAT | 3 cut(s) | 354, 374, 389 |
| BseDI | CCNNGG | 9 cut(s) | 705, 831, 893, 1524, 2311, 2513, 2571, 2659, 2997 |
| BseGI | GGATG | 7 cut(s) | 498, 1125, 1537, 1831, 2278, 2440, 2957 |
| BseJI | GATNNNNATC | 1 cut(s) | 1536 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 1943, 2375, 2393, 2446, 2459, 2801, 2968, 3056 |
| BseMI | GCAATG | 4 cut(s) | 207, 234, 1928, 2023 |
| BseNI | ACTGG | 7 cut(s) | 208, 565, 652, 1802, 1915, 2461, 2795 |
| BseRI | GAGGAG | 3 cut(s) | 76, 100, 2937 |
| BseSI | GKGCMC | 1 cut(s) | 369 |
| BseYI | CCCAGC | 4 cut(s) | 97, 193, 1337, 3016 |
| BsgI | GTGCAG | 4 cut(s) | 2025, 2493, 2508, 3082 |
| Bsh1236I | CGCG | 1 cut(s) | 833 |
| BshNI | GGYRCC | 2 cut(s) | 2422, 2495 |
| BshVI | ATCGAT | 3 cut(s) | 354, 374, 389 |
| BsiHKAI | GWGCWC | 4 cut(s) | 13, 86, 444, 2947 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2311, 2997 |
| BsiSI | CCGG | 8 cut(s) | 28, 213, 229, 893, 1007, 1944, 2312, 2998 |
| BslFI | GGGAC | 4 cut(s) | 910, 1229, 1384, 2589 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 1943, 2375, 2393, 2446, 2459, 2801, 2968, 3056 |
| BsmAI | GTCTC | 4 cut(s) | 1579, 1634, 2487, 2967 |
| BsmFI | GGGAC | 4 cut(s) | 910, 1229, 1384, 2589 |
| BsmI | GAATGC | 5 cut(s) | 943, 1088, 2293, 2364, 2614 |
| Bso31I | GGTCTC | 1 cut(s) | 1634 |
| BsoBI | CYCGRG | 2 cut(s) | 2311, 2997 |
| Bsp119I | TTCGAA | 1 cut(s) | 3038 |
| Bsp1286I | GDGCHC | 5 cut(s) | 13, 86, 369, 444, 2947 |
| Bsp1407I | TGTACA | 2 cut(s) | 123, 1766 |
| Bsp19I | CCATGG | 1 cut(s) | 705 |
| BspDI | ATCGAT | 3 cut(s) | 354, 374, 389 |
| BspFNI | CGCG | 1 cut(s) | 833 |
| BspHI | TCATGA | 2 cut(s) | 2245, 2811 |
| BspLI | GGNNCC | 9 cut(s) | 688, 1762, 2397, 2424, 2451, 2497, 2569, 2674, 3029 |
| BspPI | GGATC | 6 cut(s) | 843, 1734, 1755, 1768, 2013, 2527 |
| BspQI | GCTCTTC | 1 cut(s) | 2124 |
| BspT104I | TTCGAA | 1 cut(s) | 3038 |
| BspT107I | GGYRCC | 2 cut(s) | 2422, 2495 |
| BspTI | CTTAAG | 1 cut(s) | 839 |
| BspTNI | GGTCTC | 1 cut(s) | 1634 |
| BsrDI | GCAATG | 4 cut(s) | 207, 234, 1928, 2023 |
| BsrGI | TGTACA | 2 cut(s) | 123, 1766 |
| BsrI | ACTGG | 7 cut(s) | 208, 565, 652, 1802, 1915, 2461, 2795 |
| BssECI | CCNNGG | 9 cut(s) | 705, 831, 893, 1524, 2311, 2513, 2571, 2659, 2997 |
| BssNAI | GTATAC | 1 cut(s) | 2266 |
| BssNI | GRCGYC | 1 cut(s) | 971 |
| BssT1I | CCWWGG | 4 cut(s) | 705, 1524, 2513, 2571 |
| Bst1107I | GTATAC | 1 cut(s) | 2266 |
| Bst2UI | CCWGG | 5 cut(s) | 581, 1094, 1128, 2388, 2802 |
| Bst4CI | ACNGT | 8 cut(s) | 260, 364, 1408, 1420, 1501, 1745, 2048, 2677 |
| Bst6I | CTCTTC | 3 cut(s) | 2124, 2880, 3108 |
| BstACI | GRCGYC | 1 cut(s) | 971 |
| BstAFI | CTTAAG | 1 cut(s) | 839 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 1236, 1595, 1693, 3143 |
| BstAUI | TGTACA | 2 cut(s) | 123, 1766 |
| BstBI | TTCGAA | 1 cut(s) | 3038 |
| BstC8I | GCNNGC | 5 cut(s) | 9, 274, 602, 1170, 1568 |
| BstDSI | CCRYGG | 3 cut(s) | 705, 831, 2659 |
| BstEII | GGTNACC | 1 cut(s) | 3080 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3054 |
| BstF5I | GGATG | 7 cut(s) | 498, 1125, 1537, 1831, 2278, 2440, 2957 |
| BstFNI | CGCG | 1 cut(s) | 833 |
| BstH2I | RGCGCY | 2 cut(s) | 46, 2632 |
| BstHHI | GCGC | 4 cut(s) | 45, 168, 1174, 2631 |
| BstMAI | GTCTC | 4 cut(s) | 1579, 1634, 2487, 2967 |
| BstNI | CCWGG | 5 cut(s) | 581, 1094, 1128, 2388, 2802 |
| BstNSI | RCATGY | 1 cut(s) | 1436 |
| BstPI | GGTNACC | 1 cut(s) | 3080 |
| BstSFI | CTRYAG | 1 cut(s) | 1845 |
| BstSLI | GKGCMC | 1 cut(s) | 369 |
| BstUI | CGCG | 1 cut(s) | 833 |
| BstV2I | GAAGAC | 3 cut(s) | 96, 147, 749 |
| BstX2I | RGATCY | 5 cut(s) | 835, 1726, 1760, 2229, 2519 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1809, 3024 |
| BstYI | RGATCY | 5 cut(s) | 835, 1726, 1760, 2229, 2519 |
| BstZ17I | GTATAC | 1 cut(s) | 2266 |
| Bsu15I | ATCGAT | 3 cut(s) | 354, 374, 389 |
| BsuI | GTATCC | 2 cut(s) | 900, 2199 |
| BsuTUI | ATCGAT | 3 cut(s) | 354, 374, 389 |
| BtgI | CCRYGG | 3 cut(s) | 705, 831, 2659 |
| BtgZI | GCGATG | 1 cut(s) | 2877 |
| BtrI | CACGTC | 1 cut(s) | 3062 |
| BtsCI | GGATG | 7 cut(s) | 498, 1125, 1537, 1831, 2278, 2440, 2957 |
| BtsI | GCAGTG | 3 cut(s) | 1239, 2718, 3141 |
| Cac8I | GCNNGC | 5 cut(s) | 9, 274, 602, 1170, 1568 |
| CaiI | CAGNNNCTG | 3 cut(s) | 2801, 3116, 3143 |
| CciI | TCATGA | 2 cut(s) | 2245, 2811 |
| CfoI | GCGC | 4 cut(s) | 45, 168, 1174, 2631 |
| Cfr13I | GGNCC | 6 cut(s) | 231, 1076, 1292, 2384, 2396, 2777 |
| Cfr42I | CCGCGG | 1 cut(s) | 834 |
| Cfr9I | CCCGGG | 2 cut(s) | 2311, 2997 |
| ClaI | ATCGAT | 3 cut(s) | 354, 374, 389 |
| CseI | GACGC | 2 cut(s) | 960, 2741 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2980 |
| EaeI | YGGCCR | 7 cut(s) | 315, 708, 1095, 1182, 1811, 2792, 2893 |
| Eam1104I | CTCTTC | 3 cut(s) | 2124, 2880, 3108 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2980 |
| EarI | CTCTTC | 3 cut(s) | 2124, 2880, 3108 |
| EciI | GGCGGA | 2 cut(s) | 507, 1037 |
| Ecl136II | GAGCTC | 2 cut(s) | 84, 2945 |
| Eco130I | CCWWGG | 4 cut(s) | 705, 1524, 2513, 2571 |
| Eco147I | AGGCCT | 2 cut(s) | 248, 1302 |
| Eco24I | GRGCYC | 2 cut(s) | 86, 2947 |
| Eco31I | GGTCTC | 1 cut(s) | 1634 |
| Eco47I | GGWCC | 6 cut(s) | 231, 1076, 1292, 2384, 2396, 2777 |
| Eco47III | AGCGCT | 2 cut(s) | 44, 2630 |
| Eco53kI | GAGCTC | 2 cut(s) | 84, 2945 |
| Eco57I | CTGAAG | 4 cut(s) | 1317, 2156, 2169, 2957 |
| Eco88I | CYCGRG | 2 cut(s) | 2311, 2997 |
| Eco91I | GGTNACC | 1 cut(s) | 3080 |
| EcoICRI | GAGCTC | 2 cut(s) | 84, 2945 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3054 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1076, 2396 |
| EcoO65I | GGTNACC | 1 cut(s) | 3080 |
| EcoRI | GAATTC | 1 cut(s) | 2463 |
| EcoRII | CCWGG | 5 cut(s) | 579, 1092, 1126, 2386, 2800 |
| EcoT14I | CCWWGG | 4 cut(s) | 705, 1524, 2513, 2571 |
| EcoT22I | ATGCAT | 1 cut(s) | 2590 |
| EcoT38I | GRGCYC | 2 cut(s) | 86, 2947 |
| ErhI | CCWWGG | 4 cut(s) | 705, 1524, 2513, 2571 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2402, 2434 |
| FaqI | GGGAC | 4 cut(s) | 910, 1229, 1384, 2589 |
| FbaI | TGATCA | 2 cut(s) | 633, 1537 |
| FblI | GTMKAC | 1 cut(s) | 2265 |
| FokI | GGATG | 7 cut(s) | 505, 1132, 1544, 1818, 2285, 2427, 2944 |
| FriOI | GRGCYC | 2 cut(s) | 86, 2947 |
| FspAI | RTGCGCAY | 1 cut(s) | 167 |
| FspBI | CTAG | 2 cut(s) | 798, 2061 |
| FspI | TGCGCA | 1 cut(s) | 167 |
| GlaI | GCGC | 4 cut(s) | 44, 167, 1173, 2630 |
| GsaI | CCCAGC | 4 cut(s) | 101, 197, 1341, 3020 |
| GsuI | CTGGAG | 1 cut(s) | 1974 |
| HaeII | RGCGCY | 2 cut(s) | 46, 2632 |
| HapII | CCGG | 8 cut(s) | 28, 213, 229, 893, 1007, 1944, 2312, 2998 |
| HgaI | GACGC | 2 cut(s) | 960, 2741 |
| HhaI | GCGC | 4 cut(s) | 45, 168, 1174, 2631 |
| Hin1I | GRCGYC | 1 cut(s) | 971 |
| Hin6I | GCGC | 4 cut(s) | 43, 166, 1172, 2629 |
| HinP1I | GCGC | 4 cut(s) | 43, 166, 1172, 2629 |
| HincII | GTYRAC | 3 cut(s) | 420, 2698, 3067 |
| HindII | GTYRAC | 3 cut(s) | 420, 2698, 3067 |
| HpaII | CCGG | 8 cut(s) | 28, 213, 229, 893, 1007, 1944, 2312, 2998 |
| Hpy166II | GTNNAC | 7 cut(s) | 126, 420, 561, 570, 2266, 2698, 3067 |
| Hpy8I | GTNNAC | 7 cut(s) | 126, 420, 561, 570, 2266, 2698, 3067 |
| HpyCH4III | ACNGT | 8 cut(s) | 260, 364, 1408, 1420, 1501, 1745, 2048, 2677 |
| HpyCH4IV | ACGT | 5 cut(s) | 141, 867, 2186, 2931, 3061 |
| HpySE526I | ACGT | 5 cut(s) | 141, 867, 2186, 2931, 3061 |
| Hsp92I | GRCGYC | 1 cut(s) | 971 |
| HspAI | GCGC | 4 cut(s) | 43, 166, 1172, 2629 |
| KpnI | GGTACC | 1 cut(s) | 2499 |
| Ksp22I | TGATCA | 2 cut(s) | 633, 1537 |
| KspI | CCGCGG | 1 cut(s) | 834 |
| LguI | GCTCTTC | 1 cut(s) | 2124 |
| LmnI | GCTCC | 9 cut(s) | 4, 89, 1198, 1946, 2276, 2324, 2942, 2950, 3033 |
| MaeI | CTAG | 2 cut(s) | 798, 2061 |
| MaeII | ACGT | 5 cut(s) | 141, 867, 2186, 2931, 3061 |
| MfeI | CAATTG | 2 cut(s) | 763, 1437 |
| MflI | RGATCY | 5 cut(s) | 835, 1726, 1760, 2229, 2519 |
| MhlI | GDGCHC | 5 cut(s) | 13, 86, 369, 444, 2947 |
| MlsI | TGGCCA | 5 cut(s) | 710, 1097, 1184, 2794, 2895 |
| MluNI | TGGCCA | 5 cut(s) | 710, 1097, 1184, 2794, 2895 |
| MlyI | GAGTC | 4 cut(s) | 617, 1478, 1913, 2571 |
| MmeI | TCCRAC | 4 cut(s) | 894, 1333, 2297, 2829 |
| Mox20I | TGGCCA | 5 cut(s) | 710, 1097, 1184, 2794, 2895 |
| Mph1103I | ATGCAT | 1 cut(s) | 2590 |
| MscI | TGGCCA | 5 cut(s) | 710, 1097, 1184, 2794, 2895 |
| MseI | TTAA | 7 cut(s) | 840, 933, 1305, 1358, 1467, 1778, 2712 |
| MslI | CAYNNNNRTG | 5 cut(s) | 710, 948, 2016, 2250, 2810 |
| Msp20I | TGGCCA | 5 cut(s) | 710, 1097, 1184, 2794, 2895 |
| MspA1I | CMGCKG | 4 cut(s) | 695, 833, 1376, 2507 |
| MspCI | CTTAAG | 1 cut(s) | 839 |
| MspI | CCGG | 8 cut(s) | 28, 213, 229, 893, 1007, 1944, 2312, 2998 |
| MunI | CAATTG | 2 cut(s) | 763, 1437 |
| Mva1269I | GAATGC | 5 cut(s) | 943, 1088, 2293, 2364, 2614 |
| MvaI | CCWGG | 5 cut(s) | 581, 1094, 1128, 2388, 2802 |
| MvnI | CGCG | 1 cut(s) | 833 |
| NciI | CCSGG | 9 cut(s) | 29, 214, 229, 894, 1008, 2312, 2313, 2998, 2999 |
| NcoI | CCATGG | 1 cut(s) | 705 |
| NlaIV | GGNNCC | 9 cut(s) | 688, 1762, 2397, 2424, 2451, 2497, 2569, 2674, 3029 |
| NmeAIII | GCCGAG | 1 cut(s) | 343 |
| NmuCI | GTSAC | 9 cut(s) | 216, 260, 767, 826, 863, 1804, 2089, 2182, 3080 |
| NsbI | TGCGCA | 1 cut(s) | 167 |
| NsiI | ATGCAT | 1 cut(s) | 2590 |
| NspI | RCATGY | 1 cut(s) | 1436 |
| NspV | TTCGAA | 1 cut(s) | 3038 |
| PagI | TCATGA | 2 cut(s) | 2245, 2811 |
| PceI | AGGCCT | 2 cut(s) | 248, 1302 |
| PciSI | GCTCTTC | 1 cut(s) | 2124 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 360 |
| PctI | GAATGC | 5 cut(s) | 943, 1088, 2293, 2364, 2614 |
| PfeI | GAWTC | 7 cut(s) | 185, 344, 376, 386, 547, 1154, 1750 |
| PflFI | GACNNNGTC | 2 cut(s) | 229, 1406 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2446, 2801 |
| PleI | GAGTC | 4 cut(s) | 616, 1478, 1913, 2571 |
| PpsI | GAGTC | 4 cut(s) | 616, 1478, 1913, 2571 |
| PpuMI | RGGWCCY | 2 cut(s) | 1076, 2396 |
| Psp124BI | GAGCTC | 2 cut(s) | 86, 2947 |
| Psp1406I | AACGTT | 1 cut(s) | 2931 |
| Psp5II | RGGWCCY | 2 cut(s) | 1076, 2396 |
| Psp6I | CCWGG | 5 cut(s) | 579, 1092, 1126, 2386, 2800 |
| PspEI | GGTNACC | 1 cut(s) | 3080 |
| PspFI | CCCAGC | 4 cut(s) | 97, 193, 1337, 3016 |
| PspGI | CCWGG | 5 cut(s) | 579, 1092, 1126, 2386, 2800 |
| PspN4I | GGNNCC | 9 cut(s) | 688, 1762, 2397, 2424, 2451, 2497, 2569, 2674, 3029 |
| PspPI | GGNCC | 6 cut(s) | 231, 1076, 1292, 2384, 2396, 2777 |
| PspPPI | RGGWCCY | 2 cut(s) | 1076, 2396 |
| PstNI | CAGNNNCTG | 3 cut(s) | 2801, 3116, 3143 |
| PsuI | RGATCY | 5 cut(s) | 835, 1726, 1760, 2229, 2519 |
| PsyI | GACNNNGTC | 2 cut(s) | 229, 1406 |
| PvuII | CAGCTG | 1 cut(s) | 695 |
| RseI | CAYNNNNRTG | 5 cut(s) | 710, 948, 2016, 2250, 2810 |
| SacI | GAGCTC | 2 cut(s) | 86, 2947 |
| SacII | CCGCGG | 1 cut(s) | 834 |
| SapI | GCTCTTC | 1 cut(s) | 2124 |
| SaqAI | TTAA | 7 cut(s) | 840, 933, 1305, 1358, 1467, 1778, 2712 |
| Sau96I | GGNCC | 6 cut(s) | 231, 1076, 1292, 2384, 2396, 2777 |
| SchI | GAGTC | 4 cut(s) | 617, 1478, 1913, 2571 |
| SduI | GDGCHC | 5 cut(s) | 13, 86, 369, 444, 2947 |
| SfcI | CTRYAG | 1 cut(s) | 1845 |
| Sfr303I | CCGCGG | 1 cut(s) | 834 |
| SfuI | TTCGAA | 1 cut(s) | 3038 |
| SgrBI | CCGCGG | 1 cut(s) | 834 |
| SinI | GGWCC | 6 cut(s) | 231, 1076, 1292, 2384, 2396, 2777 |
| SmaI | CCCGGG | 2 cut(s) | 2313, 2999 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 710, 948, 2016, 2250, 2810 |
| SmlI | CTYRAG | 7 cut(s) | 437, 605, 818, 839, 1104, 1471, 2701 |
| SmoI | CTYRAG | 7 cut(s) | 437, 605, 818, 839, 1104, 1471, 2701 |
| SseBI | AGGCCT | 2 cut(s) | 248, 1302 |
| SspI | AATATT | 1 cut(s) | 724 |
| SspMI | CTAG | 2 cut(s) | 798, 2061 |
| SstI | GAGCTC | 2 cut(s) | 86, 2947 |
| StuI | AGGCCT | 2 cut(s) | 248, 1302 |
| StyI | CCWWGG | 4 cut(s) | 705, 1524, 2513, 2571 |
| TaaI | ACNGT | 8 cut(s) | 260, 364, 1408, 1420, 1501, 1745, 2048, 2677 |
| TaiI | ACGT | 5 cut(s) | 144, 870, 2189, 2934, 3064 |
| TaqI | TCGA | 9 cut(s) | 342, 354, 374, 389, 408, 813, 1721, 2901, 3038 |
| TatI | WGTACW | 4 cut(s) | 123, 567, 1110, 1766 |
| TauI | GCSGC | 2 cut(s) | 279, 1006 |
| TfiI | GAWTC | 7 cut(s) | 185, 344, 376, 386, 547, 1154, 1750 |
| Tru1I | TTAA | 7 cut(s) | 840, 933, 1305, 1358, 1467, 1778, 2712 |
| Tru9I | TTAA | 7 cut(s) | 840, 933, 1305, 1358, 1467, 1778, 2712 |
| TseFI | GTSAC | 9 cut(s) | 216, 260, 767, 826, 863, 1804, 2089, 2182, 3080 |
| Tsp45I | GTSAC | 9 cut(s) | 216, 260, 767, 826, 863, 1804, 2089, 2182, 3080 |
| TspGWI | ACGGA | 6 cut(s) | 564, 1476, 2388, 2648, 2781, 3020 |
| TspMI | CCCGGG | 2 cut(s) | 2311, 2997 |
| Tth111I | GACNNNGTC | 2 cut(s) | 229, 1406 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2446, 2801 |
| Vha464I | CTTAAG | 1 cut(s) | 839 |
| VpaK11BI | GGWCC | 6 cut(s) | 231, 1076, 1292, 2384, 2396, 2777 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3054 |
| XapI | RAATTY | 3 cut(s) | 1551, 1816, 2463 |
| XceI | RCATGY | 1 cut(s) | 1436 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1325, 2755, 2787 |
| XmaI | CCCGGG | 2 cut(s) | 2311, 2997 |
| XmiI | GTMKAC | 1 cut(s) | 2265 |
| XspI | CTAG | 2 cut(s) | 798, 2061 |
| Zsp2I | ATGCAT | 1 cut(s) | 2590 |