Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0011298

Physical Location & Seq

Genomic Coordinates Reverse (-)

5273707 .. 5276271

Gene Structure 2565 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g09140.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCAGCCTTTTCTTTCCAACATCTACTCCACCACCCTTTTCTCTTTGACTCTATTCTCTTTCCAGGCACTCCCAACAGTACTAATACCAACAACCTCCATTTCTCTCAATCTCATTACCCATCTGAGCCTTTAGTCGAGCAAATGAATATTCCTGGTGATCAGAGTGCAAGAGTTGCCGAGAGCAGCTCATGTATTGACCAAAGCTCCGCAAAGATTGCCACTTTTAGTGACAATGAGCCTTCTGTGACCAAGAAACAGAGCCCTGAGTCCTCATCTGTGGTGGATAAGCTCGAGACCGGTGAACAGGTTACTCAGAAAGTAACGACTCCCATTGAAAGGAAGAGAAGAACCAGAAACTGCTCATCACCCAGTTCTGCTCAATCCAAGGTTAAGAAGCAAAAGAAAGCTGAAGAGGAAAAGAAATCAAAAGCTGAGAAGAAAGAGCAAAAGAAAGCTGTACAAGAGGTGGAACCTCCAACAGGTTACATTCATGTTAGAGCAAGAAGGGGTCAAGCTACAGATAGCCATAGCCTTGCAGAGAGGGTAAGAAGAGAAAAAATCAGTGAGAGGATGAAGATGTTGCAAAGACTTGTTCCTGGTTGTGACAAGGTAACTGGAAGGGCTGTGATGTTGGATGAGATTATCAATTATGTTCAGTCCCTACAAAATCAAGTGGAGTTCCTCTCAATGAAGCTTGCTTCTGTGAATCCAATGTTCTATGAGTTTGGACCAGACCTTGGTGATTTGATGGTCAAACAAGAGGCATCACCATTTTCAACTGGACCACAATGCAGCCCAACACAGCCAACAAATTTTGCTGATACCTCTACCACCGCTGCCACCACCACTTTCACAGCAGCTACTAACAACTATCCTTTTCTGGATTCACTTCTACATCAATCGCCGAGGCCGACTGCCTTCCATCAGGACAATGAGAGCCTATTGTGGGATGGGGAAGATCAAAGACAAAGCTTTCTTAATCCATCTGGGTTCAACAACTTGTGTTCTTTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

340

Amino Acids

37.87

Weight (kDa)

7.12

Isoelectric Point (pI)

61.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	176 - 223	2.6e-06	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	181 - 225	4.5e-07	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50915 AT5G50915 AT5G50915 AT5G50915
fragaria_vesca	FvH4_5g09140 FvH4_5g09140
malus_domestica	MD06G1133200.v1.1 MD14G1149600.v1.1
prunus_persica	Prupe.5G144400_v2.0.a1
pyrus_communis	pycom06g12480 pycom14g12420
rosa_chinensis	RchiOBHm_Chr7g0189021
rosa_laevigata	RLG00000004638
rosa_roxburghii	Rroxscaffold_3G00265840
rosa_rugosa	Rorug06G0495700
rosa_samantha	Rh7AG100200 Rh7BG102700 Rh7CG104100 Rh7DG102200
rosa_wichuraiana	Rw7G008660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	740
AciI	CCGC	2 cut(s)	210, 837
AcsI	RAATTY	1 cut(s)	814
AcuI	CTGAAG	1 cut(s)	432
AfaI	GTAC	2 cut(s)	82, 462
AfiI	CCNNNNNNNGG	4 cut(s)	339, 482, 740, 949
AgeI	ACCGGT	1 cut(s)	299
AgsI	TTSAA	4 cut(s)	338, 780, 997, 1015
AjnI	CCWGG	3 cut(s)	64, 154, 598
Alw26I	GTCTC	1 cut(s)	290
AlwNI	CAGNNNCTG	1 cut(s)	360
Ama87I	CYCGRG	1 cut(s)	293
AoxI	GGCC	1 cut(s)	911
ApeKI	GCWGC	5 cut(s)	5, 186, 795, 839, 860
ApoI	RAATTY	1 cut(s)	814
AsiGI	ACCGGT	1 cut(s)	299
AspS9I	GGNCC	2 cut(s)	731, 785
AsuHPI	GGTGA	5 cut(s)	170, 314, 360, 755, 762
AvaI	CYCGRG	1 cut(s)	293
AvaII	GGWCC	2 cut(s)	731, 785
BanII	GRGCYC	1 cut(s)	266
BbvI	GCAGC	5 cut(s)	17, 198, 807, 826, 872
BccI	CCATC	5 cut(s)	130, 745, 933, 947, 994
BciT130I	CCWGG	3 cut(s)	66, 156, 600
BclI	TGATCA	1 cut(s)	160
BcoDI	GTCTC	1 cut(s)	290
BfmI	CTRYAG	1 cut(s)	519
BisI	GCNGC	5 cut(s)	6, 187, 796, 840, 861
BlsI	GCNGC	5 cut(s)	7, 188, 797, 841, 862
BmcAI	AGTACT	1 cut(s)	82
Bme1390I	CCNGG	3 cut(s)	66, 156, 600
Bme18I	GGWCC	2 cut(s)	731, 785
BmeT110I	CYCGRG	1 cut(s)	293
BmgT120I	GGNCC	2 cut(s)	731, 785
BmiI	GGNNCC	1 cut(s)	474
BmrFI	CCNGG	3 cut(s)	66, 156, 600
BmrI	ACTGGG	1 cut(s)	366
BmsI	GCATC	1 cut(s)	776
BmuI	ACTGGG	1 cut(s)	366
BplI	GAGNNNNNCTC	4 cut(s)	173, 205, 671, 703
BsaI	GGTCTC	1 cut(s)	290
BsaJI	CCNNGG	3 cut(s)	387, 739, 908
BsaWI	WCCGGW	1 cut(s)	299
BsaXI	ACNNNNNCTCC	4 cut(s)	12, 42, 191, 221
Bsc4I	CCNNNNNNNGG	4 cut(s)	339, 482, 740, 949
Bse118I	RCCGGY	1 cut(s)	299
Bse1I	ACTGG	3 cut(s)	372, 622, 787
BseBI	CCWGG	3 cut(s)	66, 156, 600
BseDI	CCNNGG	3 cut(s)	387, 739, 908
BseGI	GGATG	3 cut(s)	579, 643, 958
BseLI	CCNNNNNNNGG	4 cut(s)	339, 482, 740, 949
BseMII	CTCAG	4 cut(s)	117, 258, 329, 426
BseNI	ACTGG	3 cut(s)	372, 622, 787
BseXI	GCAGC	5 cut(s)	17, 198, 807, 826, 872
BshFI	GGCC	1 cut(s)	913
BshTI	ACCGGT	1 cut(s)	299
BsiHKCI	CYCGRG	1 cut(s)	293
BsiSI	CCGG	1 cut(s)	300
BslFI	GGGAC	1 cut(s)	646
BslI	CCNNNNNNNGG	4 cut(s)	339, 482, 740, 949
BsmAI	GTCTC	1 cut(s)	290
BsmFI	GGGAC	1 cut(s)	646
BsnI	GGCC	1 cut(s)	913
Bso31I	GGTCTC	1 cut(s)	290
BsoBI	CYCGRG	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp1407I	TGTACA	1 cut(s)	460
Bsp143I	GATC	2 cut(s)	160, 961
BspACI	CCGC	2 cut(s)	210, 837
BspANI	GGCC	1 cut(s)	913
BspCNI	CTCAG	4 cut(s)	118, 259, 328, 427
BspLI	GGNNCC	1 cut(s)	474
BspTNI	GGTCTC	1 cut(s)	290
BsrFI	RCCGGY	1 cut(s)	299
BsrGI	TGTACA	1 cut(s)	460
BsrI	ACTGG	3 cut(s)	372, 622, 787
BssAI	RCCGGY	1 cut(s)	299
BssECI	CCNNGG	3 cut(s)	387, 739, 908
BssMI	GATC	2 cut(s)	160, 961
BssT1I	CCWWGG	2 cut(s)	387, 739
Bst2UI	CCWGG	3 cut(s)	66, 156, 600
Bst4CI	ACNGT	1 cut(s)	80
Bst6I	CTCTTC	3 cut(s)	338, 408, 547
BstAPI	GCANNNNNTGC	2 cut(s)	176, 218
BstAUI	TGTACA	1 cut(s)	460
BstC8I	GCNNGC	1 cut(s)	699
BstDEI	CTNAG	4 cut(s)	126, 267, 315, 435
BstENI	CCTNNNNNAGG	1 cut(s)	480
BstF5I	GGATG	3 cut(s)	579, 643, 958
BstKTI	GATC	2 cut(s)	163, 964
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	2 cut(s)	160, 961
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 218
BstNI	CCWGG	3 cut(s)	66, 156, 600
BstSCI	CCNGG	3 cut(s)	64, 154, 598
BstSFI	CTRYAG	1 cut(s)	519
BstV1I	GCAGC	5 cut(s)	17, 198, 807, 826, 872
BsuRI	GGCC	1 cut(s)	913
BtsCI	GGATG	3 cut(s)	579, 643, 958
BtsIMutI	CAGTG	1 cut(s)	571
Cac8I	GCNNGC	1 cut(s)	699
CaiI	CAGNNNCTG	1 cut(s)	360
Cfr10I	RCCGGY	1 cut(s)	299
Cfr13I	GGNCC	2 cut(s)	731, 785
Csp6I	GTAC	2 cut(s)	81, 461
CspAI	ACCGGT	1 cut(s)	299
CviAII	CATG	2 cut(s)	192, 494
CviQI	GTAC	2 cut(s)	81, 461
DdeI	CTNAG	4 cut(s)	126, 267, 315, 435
DpnI	GATC	2 cut(s)	162, 963
DpnII	GATC	2 cut(s)	160, 961
Eam1104I	CTCTTC	3 cut(s)	338, 408, 547
EarI	CTCTTC	3 cut(s)	338, 408, 547
Eco130I	CCWWGG	2 cut(s)	387, 739
Eco24I	GRGCYC	1 cut(s)	266
Eco31I	GGTCTC	1 cut(s)	290
Eco47I	GGWCC	2 cut(s)	731, 785
Eco57I	CTGAAG	1 cut(s)	432
Eco88I	CYCGRG	1 cut(s)	293
EcoNI	CCTNNNNNAGG	1 cut(s)	480
EcoRII	CCWGG	3 cut(s)	64, 154, 598
EcoT14I	CCWWGG	2 cut(s)	387, 739
EcoT38I	GRGCYC	1 cut(s)	266
ErhI	CCWWGG	2 cut(s)	387, 739
FaeI	CATG	2 cut(s)	195, 497
FaiI	YATR	5 cut(s)	193, 495, 531, 654, 723
FaqI	GGGAC	1 cut(s)	646
FatI	CATG	2 cut(s)	191, 493
FbaI	TGATCA	1 cut(s)	160
Fnu4HI	GCNGC	5 cut(s)	6, 187, 796, 840, 861
FokI	GGATG	3 cut(s)	586, 650, 965
FriOI	GRGCYC	1 cut(s)	266
Fsp4HI	GCNGC	5 cut(s)	6, 187, 796, 840, 861
GluI	GCNGC	5 cut(s)	6, 187, 796, 840, 861
HaeIII	GGCC	1 cut(s)	913
HapII	CCGG	1 cut(s)	300
Hin1II	CATG	2 cut(s)	195, 497
HindIII	AAGCTT	2 cut(s)	695, 973
HinfI	GANTC	5 cut(s)	50, 269, 328, 709, 887
HpaII	CCGG	1 cut(s)	300
HphI	GGTGA	5 cut(s)	170, 314, 360, 755, 762
Hpy166II	GTNNAC	1 cut(s)	305
Hpy188I	TCNGA	3 cut(s)	127, 165, 318
Hpy188III	TCNNGA	3 cut(s)	295, 884, 929
Hpy8I	GTNNAC	1 cut(s)	305
HpyAV	CCTTC	4 cut(s)	252, 501, 615, 931
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4V	TGCA	4 cut(s)	170, 539, 586, 795
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 218
HpyF3I	CTNAG	4 cut(s)	126, 267, 315, 435
Hsp92II	CATG	2 cut(s)	195, 497
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	2 cut(s)	160, 961
LmnI	GCTCC	1 cut(s)	212
Lsp1109I	GCAGC	5 cut(s)	17, 198, 807, 826, 872
LweI	GCATC	1 cut(s)	776
MaeIII	GTNAC	7 cut(s)	230, 247, 310, 322, 485, 605, 613
MalI	GATC	2 cut(s)	162, 963
MboI	GATC	2 cut(s)	160, 961
MboII	GAAGA	7 cut(s)	355, 360, 425, 451, 564, 589, 971
MhlI	GDGCHC	1 cut(s)	266
MluCI	AATT	3 cut(s)	649, 814, 1015
MlyI	GAGTC	3 cut(s)	44, 278, 322
MmeI	TCCRAC	3 cut(s)	43, 503, 615
MseI	TTAA	3 cut(s)	393, 981, 1018
MspA1I	CMGCKG	1 cut(s)	839
MspI	CCGG	1 cut(s)	300
MspR9I	CCNGG	3 cut(s)	66, 156, 600
MvaI	CCWGG	3 cut(s)	66, 156, 600
MwoI	GCNNNNNNNGC	2 cut(s)	176, 218
NdeII	GATC	2 cut(s)	160, 961
NlaIII	CATG	2 cut(s)	195, 497
NlaIV	GGNNCC	1 cut(s)	474
NmeAIII	GCCGAG	2 cut(s)	205, 933
NmuCI	GTSAC	3 cut(s)	230, 247, 605
PaeR7I	CTCGAG	1 cut(s)	293
PcsI	WCGNNNNNNNCGW	1 cut(s)	911
PfeI	GAWTC	2 cut(s)	709, 887
PflMI	CCANNNNNTGG	1 cut(s)	740
PinAI	ACCGGT	1 cut(s)	299
PkrI	GCNGC	5 cut(s)	7, 188, 797, 841, 862
PleI	GAGTC	3 cut(s)	44, 277, 322
PpsI	GAGTC	3 cut(s)	44, 277, 322
Psp6I	CCWGG	3 cut(s)	64, 154, 598
PspGI	CCWGG	3 cut(s)	64, 154, 598
PspN4I	GGNNCC	1 cut(s)	474
PspPI	GGNCC	2 cut(s)	731, 785
PstNI	CAGNNNCTG	1 cut(s)	360
RsaI	GTAC	2 cut(s)	82, 462
RsaNI	GTAC	2 cut(s)	81, 461
SaqAI	TTAA	3 cut(s)	393, 981, 1018
SatI	GCNGC	5 cut(s)	6, 187, 796, 840, 861
Sau3AI	GATC	2 cut(s)	160, 961
Sau96I	GGNCC	2 cut(s)	731, 785
ScaI	AGTACT	1 cut(s)	82
SchI	GAGTC	3 cut(s)	44, 278, 322
ScrFI	CCNGG	3 cut(s)	66, 156, 600
SduI	GDGCHC	1 cut(s)	266
SfaNI	GCATC	1 cut(s)	776
SfcI	CTRYAG	1 cut(s)	519
Sfr274I	CTCGAG	1 cut(s)	293
SinI	GGWCC	2 cut(s)	731, 785
SlaI	CTCGAG	1 cut(s)	293
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	3 cut(s)	649, 814, 1015
SsiI	CCGC	2 cut(s)	210, 837
SspI	AATATT	1 cut(s)	151
StyD4I	CCNGG	3 cut(s)	64, 154, 598
StyI	CCWWGG	2 cut(s)	387, 739
TaaI	ACNGT	1 cut(s)	80
TaqI	TCGA	2 cut(s)	138, 294
TasI	AATT	3 cut(s)	649, 814, 1015
TatI	WGTACW	2 cut(s)	80, 460
TfiI	GAWTC	2 cut(s)	709, 887
Tru1I	TTAA	3 cut(s)	393, 981, 1018
Tru9I	TTAA	3 cut(s)	393, 981, 1018
TscAI	CASTG	1 cut(s)	571
TseFI	GTSAC	3 cut(s)	230, 247, 605
TseI	GCWGC	5 cut(s)	5, 186, 795, 839, 860
Tsp45I	GTSAC	3 cut(s)	230, 247, 605
TspDTI	ATGAA	4 cut(s)	161, 482, 590, 707
TspRI	CASTG	1 cut(s)	571
Van91I	CCANNNNNTGG	1 cut(s)	740
VpaK11BI	GGWCC	2 cut(s)	731, 785
XagI	CCTNNNNNAGG	1 cut(s)	480
XapI	RAATTY	1 cut(s)	814
XhoI	CTCGAG	1 cut(s)	293
ZrmI	AGTACT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.