Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0011298

Physical Location & Seq

Genomic Coordinates Reverse (-)

61031778 .. 61033375

Gene Structure 1598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004638

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGAATATTCCTGTTGAGAGTGCAAGAGTTGCCGAGAGCAGCTCATGTATTGACCAGAGCTCCACAAAGATTGTAACTTTTAGTGACAATGAGCCTTCTGTGACCAAAAAACAGAGCCCAGAGTCCTCAGCTGTGGTGGATAAGCTTGAGACTGGTGAGCAGGTTACTCAGAAAGTGATGACTCCCATGGAAAGGAAGAGAAGAACCAGAAATGGGTCATCACCCAATTCTGCTCAATCCAAGGTCAAGAAGCCAAAGAAAGCTGAAGAGGAAAAGAAGCCCAAAGCTGAAAAGAAAGAGCAAGTGAAAGCTGTACAAGAAGTGGAACCTCCAACAGGTTACATTCATGTTAGAGCAAGAAGGGGTCAAGCTACAGATAGCCATAGCCTTGCAGAGAGGGTAAGAAGAGAAAAAATCAGTGAGAGGATGAAGATGTTGCAAAGACTTGTTCCTGGTTGTGACAAGGTAACCGGAAGGGCTGTGATGTTGGATGAGATTATCAATTATGTTCAGTCCCTACAAAATCAAGTGGAGTTTCTCTCAATGAAGCTTGCTTCTGTGAATCCAATGTTCTATGACTTTGGACCAGACCTTGGTGATTTGATGGTCAAACAAGAGGCATCACCATTTTCAACTGGACCACAATGCAGCCCAACACAGCCAACAGATTTTGCTGATACCTCTACTAATTTTGTCACGACCACCACTGCCGCCGCCACCAGCTTCTCGGCGGCTACTAACAACTATCCATTTCTGGATTCACTTCTACTTCAGCAATCGCAGAGGCCGACTGCCTTCCATCAGGACAGTGAGAGCCTATTGTGGGATGTGGAAGATCAAAGACAAAGCTTTCTTAATCCATCTGGGTTCAGCTACAACTTGTGTTCTTTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

299

Amino Acids

33.22

Weight (kDa)

7.63

Isoelectric Point (pI)

57.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	127 - 174	2.2e-06	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	132 - 176	3.6e-07	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50915 AT5G50915 AT5G50915 AT5G50915
fragaria_vesca	FvH4_5g09140 FvH4_5g09140
malus_domestica	MD06G1133200.v1.1 MD14G1149600.v1.1
prunus_persica	Prupe.5G144400_v2.0.a1
pyrus_communis	pycom06g12480 pycom14g12420
rosa_chinensis	RchiOBHm_Chr7g0189021
rosa_laevigata	RLG00000004638
rosa_roxburghii	Rroxscaffold_3G00265840
rosa_rugosa	Rorug06G0495700
rosa_samantha	Rh7AG100200 Rh7BG102700 Rh7CG104100 Rh7DG102200
rosa_wichuraiana	Rw7G008660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	151
AccB7I	CCANNNNNTGG	1 cut(s)	593
AciI	CCGC	3 cut(s)	711, 714, 731
AcuI	CTGAAG	2 cut(s)	285, 755
AfaI	GTAC	1 cut(s)	315
AfiI	CCNNNNNNNGG	5 cut(s)	192, 213, 335, 593, 823
AgsI	TTSAA	2 cut(s)	633, 892
AjnI	CCWGG	1 cut(s)	451
Alw21I	GWGCWC	1 cut(s)	62
Alw26I	GTCTC	1 cut(s)	143
AoxI	GGCC	1 cut(s)	785
ApeKI	GCWGC	2 cut(s)	39, 648
AspS9I	GGNCC	2 cut(s)	584, 638
AsuHPI	GGTGA	4 cut(s)	167, 213, 608, 615
AvaII	GGWCC	2 cut(s)	584, 638
BanII	GRGCYC	2 cut(s)	62, 119
Bbv12I	GWGCWC	1 cut(s)	62
BbvCI	CCTCAGC	1 cut(s)	127
BbvI	GCAGC	2 cut(s)	51, 660
BccI	CCATC	3 cut(s)	598, 807, 868
BciT130I	CCWGG	1 cut(s)	453
BcoDI	GTCTC	1 cut(s)	143
BfmI	CTRYAG	1 cut(s)	372
BfuAI	ACCTGC	1 cut(s)	151
BisI	GCNGC	5 cut(s)	40, 649, 711, 714, 732
BlsI	GCNGC	5 cut(s)	41, 650, 712, 715, 733
Bme1390I	CCNGG	1 cut(s)	453
Bme18I	GGWCC	2 cut(s)	584, 638
BmgT120I	GGNCC	2 cut(s)	584, 638
BmiI	GGNNCC	1 cut(s)	327
BmrFI	CCNGG	1 cut(s)	453
BmsI	GCATC	1 cut(s)	629
BplI	GAGNNNNNCTC	4 cut(s)	26, 58, 524, 556
Bpu10I	CCTNAGC	1 cut(s)	127
BpuEI	CTTGAG	1 cut(s)	167
BsaJI	CCNNGG	3 cut(s)	186, 240, 592
BsaWI	WCCGGW	1 cut(s)	470
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	5 cut(s)	192, 213, 335, 593, 823
Bse1I	ACTGG	2 cut(s)	157, 640
BseBI	CCWGG	1 cut(s)	453
BseDI	CCNNGG	3 cut(s)	186, 240, 592
BseGI	GGATG	3 cut(s)	432, 496, 832
BseLI	CCNNNNNNNGG	5 cut(s)	192, 213, 335, 593, 823
BseMII	CTCAG	2 cut(s)	141, 182
BseNI	ACTGG	2 cut(s)	157, 640
BseXI	GCAGC	2 cut(s)	51, 660
BshFI	GGCC	1 cut(s)	787
BsiHKAI	GWGCWC	1 cut(s)	62
BsiSI	CCGG	1 cut(s)	471
BslFI	GGGAC	1 cut(s)	499
BslI	CCNNNNNNNGG	5 cut(s)	192, 213, 335, 593, 823
BsmAI	GTCTC	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	499
BsnI	GGCC	1 cut(s)	787
Bsp1286I	GDGCHC	2 cut(s)	62, 119
Bsp1407I	TGTACA	1 cut(s)	313
Bsp143I	GATC	1 cut(s)	835
Bsp19I	CCATGG	1 cut(s)	186
BspACI	CCGC	3 cut(s)	711, 714, 731
BspANI	GGCC	1 cut(s)	787
BspCNI	CTCAG	2 cut(s)	140, 181
BspLI	GGNNCC	1 cut(s)	327
BspMI	ACCTGC	1 cut(s)	151
BsrGI	TGTACA	1 cut(s)	313
BsrI	ACTGG	2 cut(s)	157, 640
BssECI	CCNNGG	3 cut(s)	186, 240, 592
BssMI	GATC	1 cut(s)	835
BssT1I	CCWWGG	3 cut(s)	186, 240, 592
Bst2UI	CCWGG	1 cut(s)	453
Bst4CI	ACNGT	1 cut(s)	809
Bst6I	CTCTTC	3 cut(s)	191, 261, 400
BstAPI	GCANNNNNTGC	1 cut(s)	29
BstAUI	TGTACA	1 cut(s)	313
BstC8I	GCNNGC	1 cut(s)	552
BstDEI	CTNAG	2 cut(s)	127, 168
BstDSI	CCRYGG	1 cut(s)	186
BstEII	GGTNACC	1 cut(s)	466
BstENI	CCTNNNNNAGG	1 cut(s)	333
BstF5I	GGATG	3 cut(s)	432, 496, 832
BstKTI	GATC	1 cut(s)	838
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	1 cut(s)	835
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstNI	CCWGG	1 cut(s)	453
BstPI	GGTNACC	1 cut(s)	466
BstSCI	CCNGG	1 cut(s)	451
BstSFI	CTRYAG	1 cut(s)	372
BstV1I	GCAGC	2 cut(s)	51, 660
BsuRI	GGCC	1 cut(s)	787
BtgI	CCRYGG	1 cut(s)	186
BtsCI	GGATG	3 cut(s)	432, 496, 832
BtsI	GCAGTG	1 cut(s)	705
BtsIMutI	CAGTG	3 cut(s)	424, 705, 814
BveI	ACCTGC	1 cut(s)	151
Cac8I	GCNNGC	1 cut(s)	552
Cfr13I	GGNCC	2 cut(s)	584, 638
Csp6I	GTAC	1 cut(s)	314
CspCI	CAANNNNNGTGG	2 cut(s)	52, 87
CviAII	CATG	3 cut(s)	45, 187, 347
CviQI	GTAC	1 cut(s)	314
DdeI	CTNAG	2 cut(s)	127, 168
DpnI	GATC	1 cut(s)	837
DpnII	GATC	1 cut(s)	835
Eam1104I	CTCTTC	3 cut(s)	191, 261, 400
EarI	CTCTTC	3 cut(s)	191, 261, 400
Ecl136II	GAGCTC	1 cut(s)	60
Eco130I	CCWWGG	3 cut(s)	186, 240, 592
Eco24I	GRGCYC	2 cut(s)	62, 119
Eco47I	GGWCC	2 cut(s)	584, 638
Eco53kI	GAGCTC	1 cut(s)	60
Eco57I	CTGAAG	2 cut(s)	285, 755
Eco91I	GGTNACC	1 cut(s)	466
EcoICRI	GAGCTC	1 cut(s)	60
EcoNI	CCTNNNNNAGG	1 cut(s)	333
EcoO65I	GGTNACC	1 cut(s)	466
EcoRII	CCWGG	1 cut(s)	451
EcoT14I	CCWWGG	3 cut(s)	186, 240, 592
EcoT38I	GRGCYC	2 cut(s)	62, 119
ErhI	CCWWGG	3 cut(s)	186, 240, 592
FaeI	CATG	3 cut(s)	48, 190, 350
FaiI	YATR	6 cut(s)	46, 188, 348, 384, 507, 576
FaqI	GGGAC	1 cut(s)	499
FatI	CATG	3 cut(s)	44, 186, 346
Fnu4HI	GCNGC	5 cut(s)	40, 649, 711, 714, 732
FokI	GGATG	3 cut(s)	439, 503, 839
FriOI	GRGCYC	2 cut(s)	62, 119
Fsp4HI	GCNGC	5 cut(s)	40, 649, 711, 714, 732
GluI	GCNGC	5 cut(s)	40, 649, 711, 714, 732
HaeIII	GGCC	1 cut(s)	787
HapII	CCGG	1 cut(s)	471
Hin1II	CATG	3 cut(s)	48, 190, 350
HindIII	AAGCTT	3 cut(s)	143, 548, 847
HinfI	GANTC	4 cut(s)	122, 181, 562, 758
HpaII	CCGG	1 cut(s)	471
HphI	GGTGA	4 cut(s)	167, 213, 608, 615
Hpy188I	TCNGA	1 cut(s)	171
Hpy188III	TCNNGA	4 cut(s)	247, 697, 755, 803
HpyAV	CCTTC	4 cut(s)	105, 354, 468, 805
HpyCH4III	ACNGT	1 cut(s)	809
HpyCH4V	TGCA	4 cut(s)	23, 392, 439, 648
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	2 cut(s)	127, 168
Hsp92II	CATG	3 cut(s)	48, 190, 350
Kzo9I	GATC	1 cut(s)	835
LmnI	GCTCC	1 cut(s)	65
Lsp1109I	GCAGC	2 cut(s)	51, 660
LweI	GCATC	1 cut(s)	629
MaeIII	GTNAC	8 cut(s)	73, 83, 100, 163, 338, 458, 466, 694
MalI	GATC	1 cut(s)	837
MboI	GATC	1 cut(s)	835
MboII	GAAGA	6 cut(s)	208, 213, 278, 417, 442, 845
MhlI	GDGCHC	2 cut(s)	62, 119
MluCI	AATT	4 cut(s)	226, 502, 688, 892
MlyI	GAGTC	2 cut(s)	131, 175
MmeI	TCCRAC	2 cut(s)	356, 468
MnlI	CCTC	8 cut(s)	136, 262, 339, 390, 417, 610, 691, 777
MseI	TTAA	2 cut(s)	855, 895
MspA1I	CMGCKG	1 cut(s)	131
MspI	CCGG	1 cut(s)	471
MspR9I	CCNGG	1 cut(s)	453
MvaI	CCWGG	1 cut(s)	453
MwoI	GCNNNNNNNGC	1 cut(s)	29
NcoI	CCATGG	1 cut(s)	186
NdeII	GATC	1 cut(s)	835
NlaIII	CATG	3 cut(s)	48, 190, 350
NlaIV	GGNNCC	1 cut(s)	327
NmeAIII	GCCGAG	2 cut(s)	58, 707
NmuCI	GTSAC	4 cut(s)	83, 100, 458, 694
PcsI	WCGNNNNNNNCGW	1 cut(s)	785
PfeI	GAWTC	2 cut(s)	562, 758
PflMI	CCANNNNNTGG	1 cut(s)	593
PkrI	GCNGC	5 cut(s)	41, 650, 712, 715, 733
PleI	GAGTC	2 cut(s)	130, 175
PpsI	GAGTC	2 cut(s)	130, 175
Psp124BI	GAGCTC	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	451
PspEI	GGTNACC	1 cut(s)	466
PspGI	CCWGG	1 cut(s)	451
PspN4I	GGNNCC	1 cut(s)	327
PspPI	GGNCC	2 cut(s)	584, 638
PvuII	CAGCTG	1 cut(s)	131
RsaI	GTAC	1 cut(s)	315
RsaNI	GTAC	1 cut(s)	314
SacI	GAGCTC	1 cut(s)	62
SaqAI	TTAA	2 cut(s)	855, 895
SatI	GCNGC	5 cut(s)	40, 649, 711, 714, 732
Sau3AI	GATC	1 cut(s)	835
Sau96I	GGNCC	2 cut(s)	584, 638
SchI	GAGTC	2 cut(s)	131, 175
ScrFI	CCNGG	1 cut(s)	453
SduI	GDGCHC	2 cut(s)	62, 119
SfaNI	GCATC	1 cut(s)	629
SfcI	CTRYAG	1 cut(s)	372
SinI	GGWCC	2 cut(s)	584, 638
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	4 cut(s)	226, 502, 688, 892
SsiI	CCGC	3 cut(s)	711, 714, 731
SspI	AATATT	1 cut(s)	7
SstI	GAGCTC	1 cut(s)	62
StyD4I	CCNGG	1 cut(s)	451
StyI	CCWWGG	3 cut(s)	186, 240, 592
TaaI	ACNGT	1 cut(s)	809
TasI	AATT	4 cut(s)	226, 502, 688, 892
TatI	WGTACW	1 cut(s)	313
TauI	GCSGC	3 cut(s)	713, 716, 734
TfiI	GAWTC	2 cut(s)	562, 758
Tru1I	TTAA	2 cut(s)	855, 895
Tru9I	TTAA	2 cut(s)	855, 895
TscAI	CASTG	3 cut(s)	424, 712, 814
TseFI	GTSAC	4 cut(s)	83, 100, 458, 694
TseI	GCWGC	2 cut(s)	39, 648
Tsp45I	GTSAC	4 cut(s)	83, 100, 458, 694
TspDTI	ATGAA	4 cut(s)	17, 335, 443, 560
TspRI	CASTG	3 cut(s)	424, 712, 814
Van91I	CCANNNNNTGG	1 cut(s)	593
VpaK11BI	GGWCC	2 cut(s)	584, 638
XagI	CCTNNNNNAGG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.