AT5G51020

Chromophore lyase CRL

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012201
Physical Location & Seq
Reverse (-)
20745349 .. 20747305
1957 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G51020.1

Sequence Viewer

Length: 810 bp
ATGGGTACCGAGTCGGGTTCGGATCCAGAATCGAGCTCAAACGGGTGGAGCCGTGCTCGTGGTCTAGTTGTCAAGACTCTGGTTTTAATTGGCGGTGCTCTTCTCATCAAGCGTCTCACTAAATCCACCACTCGTAGAGATCACGCCCGTGTCGTCTCTCGTTCTCTCACCGGAGAGAAGTTTACGAGGGAGCAAGCGTCAAGAGATCCTGATAATTACTTCAACATAAGAATGCTGAGTTGTCCAGCTGCTGAAATGGTGGATGGTTCAGAGGTTTTGTATCTCGAACAGGCATTTTGGAGGACTCCTCAGAAACCGTTTCGACAAAGATTATATATGGTGAAACCGTGTCCAAAAGAGCTAAAATGTGATGTTGAGGTAAGTTCATATGCGATCAGAGATGCTGAGGAATACAAAAATTTCTGTGACCGGCCTAAGGACCAACGCCCACTTCCTGAAGAAGTTATTGGTGACATTGGAGAGCATTTGACGACTATACACCTGAATTGTTGTGACCGTGGGAAACGTTGCTTGTACGAAGGCTCAACTTCACCTGGTGGATTTCCAAATTCATGGAACGGGGCTAGCTATTGTACTTCAGATCTTGCAGTTCTGAAAAACAATGAGATACACCTCTGGGATCGCGGCTTTGATGAGAATCGAAACCAGGTTTGGGGACCAAAGGAAGGTCCGTACGAGTTCAAGCCAGCGACATCATCGAGCATCAACGAAAACTTGTCTGCTTTGAACATCCTTTATCAATCTTCTATCGATAAACCAATCCAAGGGTCCCTCATCTTGCAAGACTAG

Protein Analysis

269

Amino Acids

30.33

Weight (kDa)

6.46

Isoelectric Point (pI)

49.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CpeT PF06206 53 - 235 1e-43 CpeT/CpcT family (DUF1001)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51020
fragaria_vesca FvH4_5g09710 FvH4_5g09710
malus_domestica MD06G1129000.v1.1 MD14G1145900.v1.1
prunus_persica Prupe.5G140300_v2.0.a1
pyrus_communis pycom06g12070 pycom14g12090
rosa_chinensis RchiOBHm_Chr7g0188531
rosa_laevigata RLG00000004686
rosa_multiflora Rmu_sc0001576.1_g000009 Rmu_sc0016427.1_g000007
rosa_roxburghii Rroxscaffold_3G00266330
rosa_rugosa Rorug06G0491000
rosa_samantha Rh7AG095900 Rh7BG097700 Rh7CG098500 Rh7DG097800
rosa_wichuraiana Rw7G008280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 5
AccB1I GGYRCC 1 cut(s) 5
AccII CGCG 1 cut(s) 645
AciI CCGC 2 cut(s) 93, 645
AclI AACGTT 1 cut(s) 526
AclWI GGATC 4 cut(s) 17, 30, 200, 648
AcsI RAATTY 2 cut(s) 418, 568
AcuI CTGAAG 2 cut(s) 477, 582
AdeI CACNNNGTG 1 cut(s) 557
AfaI GTAC 4 cut(s) 7, 536, 595, 695
AfiI CCNNNNNNNGG 4 cut(s) 436, 673, 686, 785
AgsI TTSAA 3 cut(s) 223, 703, 748
AjnI CCWGG 2 cut(s) 553, 666
AjuI GAANNNNNNNTTGG 6 cut(s) 435, 450, 467, 482, 655, 687
AleI CACNNNNGTG 1 cut(s) 147
AluBI AGCT 4 cut(s) 36, 248, 361, 588
AluI AGCT 4 cut(s) 36, 248, 361, 588
Alw21I GWGCWC 3 cut(s) 38, 58, 100
Alw26I GTCTC 2 cut(s) 119, 160
AlwI GGATC 4 cut(s) 17, 30, 200, 648
AlwNI CAGNNNCTG 1 cut(s) 251
AoxI GGCC 1 cut(s) 431
ApeKI GCWGC 1 cut(s) 248
ApoI RAATTY 2 cut(s) 418, 568
Asp718I GGTACC 1 cut(s) 5
AspS9I GGNCC 4 cut(s) 439, 677, 689, 789
AsuHPI GGTGA 4 cut(s) 160, 352, 482, 543
AsuNHI GCTAGC 1 cut(s) 584
AvaII GGWCC 4 cut(s) 439, 677, 689, 789
AxyI CCTNAGG 1 cut(s) 435
BamHI GGATCC 1 cut(s) 22
BanI GGYRCC 1 cut(s) 5
BanII GRGCYC 1 cut(s) 38
BauI CACGAG 1 cut(s) 57
Bbv12I GWGCWC 3 cut(s) 38, 58, 100
BbvCI CCTCAGC 1 cut(s) 405
BbvI GCAGC 1 cut(s) 235
BccI CCATC 1 cut(s) 257
BceAI ACGGC 1 cut(s) 36
BciT130I CCWGG 2 cut(s) 555, 668
BcoDI GTCTC 2 cut(s) 119, 160
BfaI CTAG 3 cut(s) 65, 585, 808
BglII AGATCT 1 cut(s) 601
BisI GCNGC 2 cut(s) 249, 646
BlsI GCNGC 2 cut(s) 250, 647
Bme1390I CCNGG 2 cut(s) 555, 668
Bme18I GGWCC 4 cut(s) 439, 677, 689, 789
BmgT120I GGNCC 4 cut(s) 439, 677, 689, 789
BmiI GGNNCC 6 cut(s) 7, 24, 50, 678, 790, 791
BmrFI CCNGG 2 cut(s) 555, 668
BmsI GCATC 2 cut(s) 391, 732
BmtI GCTAGC 1 cut(s) 588
BplI GAGNNNNNCTC 4 cut(s) 40, 72, 292, 324
Bpu10I CCTNAGC 1 cut(s) 405
Bsa29I ATCGAT 1 cut(s) 771
BsaBI GATNNNNATC 1 cut(s) 657
BsaJI CCNNGG 2 cut(s) 517, 784
BsaWI WCCGGW 1 cut(s) 170
BsaXI ACNNNNNCTCC 2 cut(s) 182, 212
Bsc4I CCNNNNNNNGG 4 cut(s) 436, 673, 686, 785
Bse118I RCCGGY 1 cut(s) 429
Bse21I CCTNAGG 1 cut(s) 435
Bse8I GATNNNNATC 1 cut(s) 657
BseBI CCWGG 2 cut(s) 555, 668
BseCI ATCGAT 1 cut(s) 771
BseDI CCNNGG 2 cut(s) 517, 784
BseGI GGATG 2 cut(s) 268, 750
BseJI GATNNNNATC 1 cut(s) 657
BseLI CCNNNNNNNGG 4 cut(s) 436, 673, 686, 785
BseMII CTCAG 3 cut(s) 227, 323, 396
BseRI GAGGAG 1 cut(s) 297
BseXI GCAGC 1 cut(s) 235
Bsh1236I CGCG 1 cut(s) 645
BshFI GGCC 1 cut(s) 433
BshNI GGYRCC 1 cut(s) 5
BshVI ATCGAT 1 cut(s) 771
BsiHKAI GWGCWC 3 cut(s) 38, 58, 100
BsiSI CCGG 2 cut(s) 171, 430
BsiWI CGTACG 1 cut(s) 693
BslFI GGGAC 2 cut(s) 690, 775
BslI CCNNNNNNNGG 4 cut(s) 436, 673, 686, 785
BsmAI GTCTC 2 cut(s) 119, 160
BsmBI CGTCTC 2 cut(s) 119, 160
BsmFI GGGAC 2 cut(s) 690, 775
BsmI GAATGC 1 cut(s) 237
BsnI GGCC 1 cut(s) 433
Bsp1286I GDGCHC 3 cut(s) 38, 58, 100
Bsp143I GATC 6 cut(s) 22, 139, 205, 393, 601, 640
BspACI CCGC 2 cut(s) 93, 645
BspANI GGCC 1 cut(s) 433
BspCNI CTCAG 3 cut(s) 228, 322, 397
BspDI ATCGAT 1 cut(s) 771
BspFNI CGCG 1 cut(s) 645
BspLI GGNNCC 6 cut(s) 7, 24, 50, 678, 790, 791
BspOI GCTAGC 1 cut(s) 588
BspPI GGATC 4 cut(s) 17, 30, 200, 648
BspQI GCTCTTC 1 cut(s) 105
BspT107I GGYRCC 1 cut(s) 5
BsrFI RCCGGY 1 cut(s) 429
BssAI RCCGGY 1 cut(s) 429
BssECI CCNNGG 2 cut(s) 517, 784
BssMI GATC 6 cut(s) 22, 139, 205, 393, 601, 640
BssSI CACGAG 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 784
Bst2BI CACGAG 1 cut(s) 57
Bst2UI CCWGG 2 cut(s) 555, 668
Bst4CI ACNGT 3 cut(s) 318, 348, 518
Bst6I CTCTTC 1 cut(s) 105
BstC8I GCNNGC 3 cut(s) 195, 586, 708
BstDEI CTNAG 4 cut(s) 236, 309, 405, 435
BstDSI CCRYGG 1 cut(s) 517
BstF5I GGATG 2 cut(s) 268, 750
BstFNI CGCG 1 cut(s) 645
BstKTI GATC 6 cut(s) 25, 142, 208, 396, 604, 643
BstMAI GTCTC 2 cut(s) 119, 160
BstMBI GATC 6 cut(s) 22, 139, 205, 393, 601, 640
BstNI CCWGG 2 cut(s) 555, 668
BstSCI CCNGG 2 cut(s) 553, 666
BstUI CGCG 1 cut(s) 645
BstV1I GCAGC 1 cut(s) 235
BstX2I RGATCY 3 cut(s) 22, 205, 601
BstXI CCANNNNNNTGG 1 cut(s) 573
BstYI RGATCY 3 cut(s) 22, 205, 601
Bsu15I ATCGAT 1 cut(s) 771
Bsu36I CCTNAGG 1 cut(s) 435
BsuRI GGCC 1 cut(s) 433
BsuTUI ATCGAT 1 cut(s) 771
BtgI CCRYGG 1 cut(s) 517
BtsCI GGATG 2 cut(s) 268, 750
Cac8I GCNNGC 3 cut(s) 195, 586, 708
CaiI CAGNNNCTG 1 cut(s) 251
Cfr10I RCCGGY 1 cut(s) 429
Cfr13I GGNCC 4 cut(s) 439, 677, 689, 789
ClaI ATCGAT 1 cut(s) 771
CseI GACGC 2 cut(s) 101, 186
CsiI ACCWGGT 2 cut(s) 553, 666
Csp6I GTAC 4 cut(s) 6, 535, 594, 694
CviAII CATG 1 cut(s) 573
CviQI GTAC 4 cut(s) 6, 535, 594, 694
DdeI CTNAG 4 cut(s) 236, 309, 405, 435
DpnI GATC 6 cut(s) 24, 141, 207, 395, 603, 642
DpnII GATC 6 cut(s) 22, 139, 205, 393, 601, 640
DraIII CACNNNGTG 1 cut(s) 557
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Ecl136II GAGCTC 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 784
Eco24I GRGCYC 1 cut(s) 38
Eco47I GGWCC 4 cut(s) 439, 677, 689, 789
Eco53kI GAGCTC 1 cut(s) 36
Eco57I CTGAAG 2 cut(s) 477, 582
Eco81I CCTNAGG 1 cut(s) 435
EcoICRI GAGCTC 1 cut(s) 36
EcoO109I RGGNCCY 1 cut(s) 789
EcoRII CCWGG 2 cut(s) 553, 666
EcoT14I CCWWGG 1 cut(s) 784
EcoT38I GRGCYC 1 cut(s) 38
ErhI CCWWGG 1 cut(s) 784
Esp3I CGTCTC 2 cut(s) 119, 160
FaeI CATG 1 cut(s) 576
FaiI YATR 8 cut(s) 227, 334, 336, 338, 388, 390, 497, 574
FaqI GGGAC 2 cut(s) 690, 775
FatI CATG 1 cut(s) 572
FauNDI CATATG 1 cut(s) 388
Fnu4HI GCNGC 2 cut(s) 249, 646
FokI GGATG 2 cut(s) 275, 737
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 2 cut(s) 249, 646
FspBI CTAG 3 cut(s) 65, 585, 808
GluI GCNGC 2 cut(s) 249, 646
HaeIII GGCC 1 cut(s) 433
HapII CCGG 2 cut(s) 171, 430
HgaI GACGC 2 cut(s) 101, 186
Hin1II CATG 1 cut(s) 576
HinfI GANTC 5 cut(s) 11, 29, 76, 304, 658
HpaII CCGG 2 cut(s) 171, 430
HphI GGTGA 4 cut(s) 160, 352, 482, 543
Hpy166II GTNNAC 1 cut(s) 183
Hpy188I TCNGA 6 cut(s) 22, 271, 312, 398, 601, 615
Hpy188III TCNNGA 6 cut(s) 26, 73, 201, 209, 284, 455
Hpy8I GTNNAC 1 cut(s) 183
HpyAV CCTTC 2 cut(s) 533, 680
HpyCH4III ACNGT 3 cut(s) 318, 348, 518
HpyCH4IV ACGT 1 cut(s) 526
HpyCH4V TGCA 2 cut(s) 608, 802
HpyF3I CTNAG 4 cut(s) 236, 309, 405, 435
HpySE526I ACGT 1 cut(s) 526
Hsp92II CATG 1 cut(s) 576
KflI GGGWCCC 1 cut(s) 789
KpnI GGTACC 1 cut(s) 9
Kzo9I GATC 6 cut(s) 22, 139, 205, 393, 601, 640
LguI GCTCTTC 1 cut(s) 105
LmnI GCTCC 2 cut(s) 48, 190
Lsp1109I GCAGC 1 cut(s) 235
LweI GCATC 2 cut(s) 391, 732
MabI ACCWGGT 2 cut(s) 553, 666
MaeI CTAG 3 cut(s) 65, 585, 808
MaeII ACGT 1 cut(s) 526
MaeIII GTNAC 3 cut(s) 425, 470, 512
MalI GATC 6 cut(s) 24, 141, 207, 395, 603, 642
MboI GATC 6 cut(s) 22, 139, 205, 393, 601, 640
MboII GAAGA 3 cut(s) 92, 470, 756
MflI RGATCY 3 cut(s) 22, 205, 601
MhlI GDGCHC 3 cut(s) 38, 58, 100
MluCI AATT 5 cut(s) 87, 214, 418, 505, 568
MlyI GAGTC 3 cut(s) 20, 70, 298
MnlI CCTC 8 cut(s) 180, 265, 294, 318, 370, 400, 644, 803
MseI TTAA 1 cut(s) 86
MslI CAYNNNNRTG 2 cut(s) 147, 230
MspA1I CMGCKG 1 cut(s) 248
MspI CCGG 2 cut(s) 171, 430
MspR9I CCNGG 2 cut(s) 555, 668
Mva1269I GAATGC 1 cut(s) 237
MvaI CCWGG 2 cut(s) 555, 668
MvnI CGCG 1 cut(s) 645
NdeI CATATG 1 cut(s) 388
NdeII GATC 6 cut(s) 22, 139, 205, 393, 601, 640
NheI GCTAGC 1 cut(s) 584
NlaIII CATG 1 cut(s) 576
NlaIV GGNNCC 6 cut(s) 7, 24, 50, 678, 790, 791
NmuCI GTSAC 3 cut(s) 425, 470, 512
OliI CACNNNNGTG 1 cut(s) 147
PciSI GCTCTTC 1 cut(s) 105
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PctI GAATGC 1 cut(s) 237
PfeI GAWTC 2 cut(s) 29, 658
Pfl23II CGTACG 1 cut(s) 693
PkrI GCNGC 2 cut(s) 250, 647
PleI GAGTC 3 cut(s) 19, 70, 298
PpsI GAGTC 3 cut(s) 19, 70, 298
PpuMI RGGWCCY 1 cut(s) 789
Psp124BI GAGCTC 1 cut(s) 38
Psp1406I AACGTT 1 cut(s) 526
Psp5II RGGWCCY 1 cut(s) 789
Psp6I CCWGG 2 cut(s) 553, 666
PspGI CCWGG 2 cut(s) 553, 666
PspLI CGTACG 1 cut(s) 693
PspN4I GGNNCC 6 cut(s) 7, 24, 50, 678, 790, 791
PspPI GGNCC 4 cut(s) 439, 677, 689, 789
PspPPI RGGWCCY 1 cut(s) 789
PstNI CAGNNNCTG 1 cut(s) 251
PsuI RGATCY 3 cut(s) 22, 205, 601
PvuII CAGCTG 1 cut(s) 248
RsaI GTAC 4 cut(s) 7, 536, 595, 695
RsaNI GTAC 4 cut(s) 6, 535, 594, 694
RseI CAYNNNNRTG 2 cut(s) 147, 230
SacI GAGCTC 1 cut(s) 38
SapI GCTCTTC 1 cut(s) 105
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 2 cut(s) 249, 646
Sau3AI GATC 6 cut(s) 22, 139, 205, 393, 601, 640
Sau96I GGNCC 4 cut(s) 439, 677, 689, 789
SchI GAGTC 3 cut(s) 20, 70, 298
ScrFI CCNGG 2 cut(s) 555, 668
SduI GDGCHC 3 cut(s) 38, 58, 100
SexAI ACCWGGT 2 cut(s) 553, 666
SfaNI GCATC 2 cut(s) 391, 732
SinI GGWCC 4 cut(s) 439, 677, 689, 789
SmiMI CAYNNNNRTG 2 cut(s) 147, 230
Sse9I AATT 5 cut(s) 87, 214, 418, 505, 568
SsiI CCGC 2 cut(s) 93, 645
SspMI CTAG 3 cut(s) 65, 585, 808
SstI GAGCTC 1 cut(s) 38
StyD4I CCNGG 2 cut(s) 553, 666
StyI CCWWGG 1 cut(s) 784
TaaI ACNGT 3 cut(s) 318, 348, 518
TaiI ACGT 1 cut(s) 529
TaqI TCGA 6 cut(s) 32, 285, 322, 661, 719, 771
TasI AATT 5 cut(s) 87, 214, 418, 505, 568
TatI WGTACW 1 cut(s) 593
TauI GCSGC 1 cut(s) 648
TfiI GAWTC 2 cut(s) 29, 658
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TseFI GTSAC 3 cut(s) 425, 470, 512
TseI GCWGC 1 cut(s) 248
Tsp45I GTSAC 3 cut(s) 425, 470, 512
TspDTI ATGAA 2 cut(s) 375, 561
TspGWI ACGGA 1 cut(s) 681
VpaK11BI GGWCC 4 cut(s) 439, 677, 689, 789
XapI RAATTY 2 cut(s) 418, 568
XspI CTAG 3 cut(s) 65, 585, 808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.