Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0012201

Physical Location & Seq

Genomic Coordinates Reverse (-)

5588284 .. 5590647

Gene Structure 2364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g09710.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGGTATCGGGTCGGAGTCGGGCAGCGGGAGTGGCTCCGACGACTCGTCGTCGTCGTCTTCGGGAGGAGGATGGAGCAGCGTGGCGCGTGGCGTGGTGGTGAAGACGCTGGTGTTGATCGGCGGAGCTTTATTACTGAAGCGACTGACAAAGTCCACAACCCGGTGGGACCACGCCCGCCACGTCACCCGCTCCCTCTCCGGCGAGAAGTTCTCCAAGGACCAAGCCGCCCGGGATCCTGACCACTACTTCAACATCAGACTGAGTAGCTGCCCAGCAGCTGAGATGGTGGATGGGTCTAAAGTGTTGTATTTTGAGCAAGCTTTTTGGAGGAGTCCCCAGAAGCCCTTTAGGCAGAGATTTTATATGGTGAAGCCGTGCCCGAAAGAGTTGAAGTGTGATGTTGAGGTAAGCTCATATGCAATTAGAGATGCAGAGGAGTACAAGAATTTTTGTGATCGCTCAAAGGACCAGCGTCCTCTGCCTGAAGAAGTTATTGGGGACATTGCAGAGCATTTGACAACAGTGCATCTTAAACGCTGTGAGCGTGGAAAACGCTGCTTATATGAAGGGTCAACTCCACCTGCCAGTTTCCCTAATTTATGGAATGGAGCATCATACTGTACTTCAGAACTTGCAATTCTCAAAAACAATGAGATACATTCTTGGGATAGGGGATACAACGATGAAGGAAATCAAGTTTGGGGACCAAAGGAAGGTCCTTATGAATTCAAGCCCGCACCTGCCTCGAGTACCAATGACATGTTTTCTTCTTTAAACTTTCCTATTCAGCAGTCTATCGAAAAAAGAATAGAGGGCTCATTTGTCTTGCAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0006979 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009607 GO:0009615 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0010020 GO:0016020 GO:0016032 GO:0016043 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0040011 GO:0042170 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044000 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044766 GO:0046739 GO:0046741 GO:0046794 GO:0048285 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051302 GO:0051701 GO:0051704 GO:0051707 GO:0051814 GO:0052126 GO:0052192 GO:0065007 GO:0071840 GO:0098586 GO:0098588 GO:0098805 GO:1901700 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CpeT

Protein Analysis

280

Amino Acids

31.18

Weight (kDa)

7.0

Isoelectric Point (pI)

58.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CpeT	PF06206	62 - 245	5.3e-43	CpeT/CpcT family (DUF1001)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51020
fragaria_vesca	FvH4_5g09710 FvH4_5g09710
malus_domestica	MD06G1129000.v1.1 MD14G1145900.v1.1
prunus_persica	Prupe.5G140300_v2.0.a1
pyrus_communis	pycom06g12070 pycom14g12090
rosa_chinensis	RchiOBHm_Chr7g0188531
rosa_laevigata	RLG00000004686
rosa_multiflora	Rmu_sc0001576.1_g000009 Rmu_sc0016427.1_g000007
rosa_roxburghii	Rroxscaffold_3G00266330
rosa_rugosa	Rorug06G0491000
rosa_samantha	Rh7AG095900 Rh7BG097700 Rh7CG098500 Rh7DG097800
rosa_wichuraiana	Rw7G008280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	592, 751
Acc36I	ACCTGC	2 cut(s)	592, 751
AccBSI	CCGCTC	1 cut(s)	192
AccII	CGCG	1 cut(s)	88
AciI	CCGC	6 cut(s)	27, 123, 178, 190, 228, 738
AclWI	GGATC	2 cut(s)	230, 243
AcsI	RAATTY	2 cut(s)	448, 728
AcuI	CTGAAG	3 cut(s)	158, 507, 612
AfaI	GTAC	3 cut(s)	443, 625, 754
AfiI	CCNNNNNNNGG	2 cut(s)	162, 716
AflIII	ACRYGT	1 cut(s)	762
AgsI	TTSAA	3 cut(s)	253, 394, 733
AhdI	GACNNNNNGTC	2 cut(s)	46, 49
AjiI	CACGTC	1 cut(s)	184
AjuI	GAANNNNNNNTTGG	4 cut(s)	480, 512, 685, 717
AluBI	AGCT	5 cut(s)	128, 270, 281, 323, 414
AluI	AGCT	5 cut(s)	128, 270, 281, 323, 414
AlwI	GGATC	2 cut(s)	230, 243
AlwNI	CAGNNNCTG	1 cut(s)	281
Ama87I	CYCGRG	2 cut(s)	231, 748
ApeKI	GCWGC	5 cut(s)	24, 78, 270, 278, 558
ApoI	RAATTY	2 cut(s)	448, 728
AspLEI	GCGC	1 cut(s)	88
AspS9I	GGNCC	5 cut(s)	169, 220, 469, 707, 719
AsuC2I	CCSGG	3 cut(s)	163, 232, 233
AsuHPI	GGTGA	3 cut(s)	112, 178, 382
AvaI	CYCGRG	2 cut(s)	231, 748
AvaII	GGWCC	5 cut(s)	169, 220, 469, 707, 719
BaeGI	GKGCMC	1 cut(s)	383
BamHI	GGATCC	1 cut(s)	235
BanII	GRGCYC	1 cut(s)	821
BbsI	GAAGAC	2 cut(s)	51, 110
BbvI	GCAGC	5 cut(s)	36, 90, 257, 290, 545
BccI	CCATC	3 cut(s)	66, 280, 287
BceAI	ACGGC	1 cut(s)	361
BcgI	CGANNNNNNTGC	2 cut(s)	729, 763
BciVI	GTATCC	1 cut(s)	671
BcnI	CCSGG	3 cut(s)	163, 232, 233
BfuAI	ACCTGC	2 cut(s)	592, 751
BfuI	GTATCC	1 cut(s)	671
BglI	GCCNNNNNGGC	1 cut(s)	352
BisI	GCNGC	6 cut(s)	25, 79, 228, 271, 279, 559
BlsI	GCNGC	6 cut(s)	26, 80, 229, 272, 280, 560
Bme1390I	CCNGG	3 cut(s)	163, 232, 233
Bme18I	GGWCC	5 cut(s)	169, 220, 469, 707, 719
BmeRI	GACNNNNNGTC	2 cut(s)	46, 49
BmeT110I	CYCGRG	2 cut(s)	231, 748
BmgBI	CACGTC	1 cut(s)	184
BmgT120I	GGNCC	5 cut(s)	169, 220, 469, 707, 719
BmiI	GGNNCC	4 cut(s)	37, 170, 237, 708
BmrFI	CCNGG	3 cut(s)	163, 232, 233
BmsI	GCATC	3 cut(s)	421, 538, 623
BoxI	GACNNNNGTC	1 cut(s)	474
BpiI	GAAGAC	2 cut(s)	51, 110
BplI	GAGNNNNNCTC	4 cut(s)	197, 229, 398, 430
BpuMI	CCSGG	3 cut(s)	163, 232, 233
BsaJI	CCNNGG	2 cut(s)	216, 231
Bsc4I	CCNNNNNNNGG	2 cut(s)	162, 716
Bse1I	ACTGG	1 cut(s)	588
Bse3DI	GCAATG	1 cut(s)	504
BseDI	CCNNGG	2 cut(s)	216, 231
BseGI	GGATG	2 cut(s)	77, 298
BseLI	CCNNNNNNNGG	2 cut(s)	162, 716
BseMI	GCAATG	1 cut(s)	504
BseMII	CTCAG	2 cut(s)	254, 273
BseNI	ACTGG	1 cut(s)	588
BseRI	GAGGAG	3 cut(s)	81, 346, 452
BseSI	GKGCMC	1 cut(s)	383
BseXI	GCAGC	5 cut(s)	36, 90, 257, 290, 545
BseYI	CCCAGC	1 cut(s)	274
Bsh1236I	CGCG	1 cut(s)	88
BsiHKCI	CYCGRG	2 cut(s)	231, 748
BsiSI	CCGG	3 cut(s)	163, 201, 232
BslFI	GGGAC	4 cut(s)	182, 321, 515, 720
BslI	CCNNNNNNNGG	2 cut(s)	162, 716
BsmFI	GGGAC	4 cut(s)	182, 321, 515, 720
BsoBI	CYCGRG	2 cut(s)	231, 748
Bsp1286I	GDGCHC	2 cut(s)	383, 821
Bsp143I	GATC	3 cut(s)	117, 235, 457
BspACI	CCGC	6 cut(s)	27, 123, 178, 190, 228, 738
BspCNI	CTCAG	2 cut(s)	255, 274
BspFNI	CGCG	1 cut(s)	88
BspLI	GGNNCC	4 cut(s)	37, 170, 237, 708
BspMI	ACCTGC	2 cut(s)	592, 751
BspPI	GGATC	2 cut(s)	230, 243
BsrBI	CCGCTC	1 cut(s)	192
BsrDI	GCAATG	1 cut(s)	504
BsrI	ACTGG	1 cut(s)	588
BssECI	CCNNGG	2 cut(s)	216, 231
BssMI	GATC	3 cut(s)	117, 235, 457
BssT1I	CCWWGG	1 cut(s)	216
Bst4CI	ACNGT	2 cut(s)	526, 623
BstC8I	GCNNGC	3 cut(s)	178, 321, 738
BstDEI	CTNAG	2 cut(s)	263, 282
BstF5I	GGATG	2 cut(s)	77, 298
BstFNI	CGCG	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	88
BstKTI	GATC	3 cut(s)	120, 238, 460
BstMBI	GATC	3 cut(s)	117, 235, 457
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 352, 481
BstNSI	RCATGY	1 cut(s)	766
BstPAI	GACNNNNGTC	1 cut(s)	474
BstSCI	CCNGG	3 cut(s)	161, 230, 231
BstSLI	GKGCMC	1 cut(s)	383
BstUI	CGCG	1 cut(s)	88
BstV1I	GCAGC	5 cut(s)	36, 90, 257, 290, 545
BstV2I	GAAGAC	2 cut(s)	51, 110
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
BsuI	GTATCC	1 cut(s)	671
BtrI	CACGTC	1 cut(s)	184
BtsCI	GGATG	2 cut(s)	77, 298
BtsIMutI	CAGTG	1 cut(s)	531
BveI	ACCTGC	2 cut(s)	592, 751
Cac8I	GCNNGC	3 cut(s)	178, 321, 738
CaiI	CAGNNNCTG	1 cut(s)	281
CfoI	GCGC	1 cut(s)	88
Cfr13I	GGNCC	5 cut(s)	169, 220, 469, 707, 719
Cfr9I	CCCGGG	1 cut(s)	231
CseI	GACGC	2 cut(s)	115, 464
Csp6I	GTAC	3 cut(s)	442, 624, 753
CviAII	CATG	1 cut(s)	763
CviQI	GTAC	3 cut(s)	442, 624, 753
DdeI	CTNAG	2 cut(s)	263, 282
DpnI	GATC	3 cut(s)	119, 237, 459
DpnII	GATC	3 cut(s)	117, 235, 457
DraI	TTTAAA	1 cut(s)	777
DriI	GACNNNNNGTC	2 cut(s)	46, 49
Eam1105I	GACNNNNNGTC	2 cut(s)	46, 49
EciI	GGCGGA	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	216
Eco24I	GRGCYC	1 cut(s)	821
Eco47I	GGWCC	5 cut(s)	169, 220, 469, 707, 719
Eco57I	CTGAAG	3 cut(s)	158, 507, 612
Eco88I	CYCGRG	2 cut(s)	231, 748
EcoO109I	RGGNCCY	1 cut(s)	719
EcoRI	GAATTC	1 cut(s)	728
EcoT14I	CCWWGG	1 cut(s)	216
EcoT38I	GRGCYC	1 cut(s)	821
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	1 cut(s)	766
FaqI	GGGAC	4 cut(s)	182, 321, 515, 720
FatI	CATG	1 cut(s)	762
FauI	CCCGC	4 cut(s)	20, 185, 197, 745
FauNDI	CATATG	1 cut(s)	418
Fnu4HI	GCNGC	6 cut(s)	25, 79, 228, 271, 279, 559
FokI	GGATG	2 cut(s)	84, 305
FriOI	GRGCYC	1 cut(s)	821
Fsp4HI	GCNGC	6 cut(s)	25, 79, 228, 271, 279, 559
GlaI	GCGC	1 cut(s)	87
GluI	GCNGC	6 cut(s)	25, 79, 228, 271, 279, 559
GsaI	CCCAGC	1 cut(s)	278
HapII	CCGG	3 cut(s)	163, 201, 232
HgaI	GACGC	2 cut(s)	115, 464
HhaI	GCGC	1 cut(s)	88
Hin1II	CATG	1 cut(s)	766
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HincII	GTYRAC	1 cut(s)	576
HindII	GTYRAC	1 cut(s)	576
HindIII	AAGCTT	1 cut(s)	321
HinfI	GANTC	3 cut(s)	17, 44, 334
HpaII	CCGG	3 cut(s)	163, 201, 232
HphI	GGTGA	3 cut(s)	112, 178, 382
Hpy166II	GTNNAC	2 cut(s)	156, 576
Hpy188I	TCNGA	4 cut(s)	16, 40, 260, 631
Hpy188III	TCNNGA	2 cut(s)	63, 239
Hpy8I	GTNNAC	2 cut(s)	156, 576
Hpy99I	CGWCG	4 cut(s)	44, 52, 55, 58
HpyAV	CCTTC	3 cut(s)	563, 683, 710
HpyCH4III	ACNGT	2 cut(s)	526, 623
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	6 cut(s)	422, 434, 509, 529, 638, 832
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 352, 481
HpyF3I	CTNAG	2 cut(s)	263, 282
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	1 cut(s)	766
HspAI	GCGC	1 cut(s)	86
Kzo9I	GATC	3 cut(s)	117, 235, 457
LmnI	GCTCC	5 cut(s)	41, 75, 125, 197, 611
Lsp1109I	GCAGC	5 cut(s)	36, 90, 257, 290, 545
LweI	GCATC	3 cut(s)	421, 538, 623
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	3 cut(s)	119, 237, 459
MbiI	CCGCTC	1 cut(s)	192
MboI	GATC	3 cut(s)	117, 235, 457
MboII	GAAGA	4 cut(s)	51, 115, 500, 762
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	2 cut(s)	383, 821
MluCI	AATT	5 cut(s)	423, 448, 598, 639, 728
MlyI	GAGTC	3 cut(s)	26, 38, 343
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	9 cut(s)	59, 62, 206, 324, 400, 430, 489, 757, 808
MseI	TTAA	2 cut(s)	534, 776
MspA1I	CMGCKG	2 cut(s)	27, 281
MspI	CCGG	3 cut(s)	163, 201, 232
MspR9I	CCNGG	3 cut(s)	163, 232, 233
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	3 cut(s)	33, 352, 481
NciI	CCSGG	3 cut(s)	163, 232, 233
NdeI	CATATG	1 cut(s)	418
NdeII	GATC	3 cut(s)	117, 235, 457
NlaIII	CATG	1 cut(s)	766
NlaIV	GGNNCC	4 cut(s)	37, 170, 237, 708
NmuCI	GTSAC	1 cut(s)	184
NspI	RCATGY	1 cut(s)	766
PaeR7I	CTCGAG	1 cut(s)	748
PaqCI	CACCTGC	2 cut(s)	592, 751
PciI	ACATGT	1 cut(s)	762
PcsI	WCGNNNNNNNCGW	3 cut(s)	53, 180, 544
PflFI	GACNNNGTC	1 cut(s)	151
PkrI	GCNGC	6 cut(s)	26, 80, 229, 272, 280, 560
PleI	GAGTC	3 cut(s)	25, 38, 342
PpsI	GAGTC	3 cut(s)	25, 38, 342
PpuMI	RGGWCCY	1 cut(s)	719
PscI	ACATGT	1 cut(s)	762
PshAI	GACNNNNGTC	1 cut(s)	474
Psp5II	RGGWCCY	1 cut(s)	719
PspFI	CCCAGC	1 cut(s)	274
PspN4I	GGNNCC	4 cut(s)	37, 170, 237, 708
PspPI	GGNCC	5 cut(s)	169, 220, 469, 707, 719
PspPPI	RGGWCCY	1 cut(s)	719
PspXI	VCTCGAGB	1 cut(s)	748
PstNI	CAGNNNCTG	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	235
PsyI	GACNNNGTC	1 cut(s)	151
PvuII	CAGCTG	1 cut(s)	281
RsaI	GTAC	3 cut(s)	443, 625, 754
RsaNI	GTAC	3 cut(s)	442, 624, 753
SaqAI	TTAA	2 cut(s)	534, 776
SatI	GCNGC	6 cut(s)	25, 79, 228, 271, 279, 559
Sau3AI	GATC	3 cut(s)	117, 235, 457
Sau96I	GGNCC	5 cut(s)	169, 220, 469, 707, 719
SchI	GAGTC	3 cut(s)	26, 38, 343
ScrFI	CCNGG	3 cut(s)	163, 232, 233
SduI	GDGCHC	2 cut(s)	383, 821
SfaNI	GCATC	3 cut(s)	421, 538, 623
Sfr274I	CTCGAG	1 cut(s)	748
SinI	GGWCC	5 cut(s)	169, 220, 469, 707, 719
SlaI	CTCGAG	1 cut(s)	748
SmaI	CCCGGG	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	748
SmoI	CTYRAG	1 cut(s)	748
Sse9I	AATT	5 cut(s)	423, 448, 598, 639, 728
SsiI	CCGC	6 cut(s)	27, 123, 178, 190, 228, 738
StyD4I	CCNGG	3 cut(s)	161, 230, 231
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	2 cut(s)	526, 623
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	2 cut(s)	749, 801
TasI	AATT	5 cut(s)	423, 448, 598, 639, 728
TatI	WGTACW	2 cut(s)	441, 623
TauI	GCSGC	1 cut(s)	230
Tru1I	TTAA	2 cut(s)	534, 776
Tru9I	TTAA	2 cut(s)	534, 776
TscAI	CASTG	1 cut(s)	531
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	5 cut(s)	24, 78, 270, 278, 558
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	3 cut(s)	582, 702, 741
TspMI	CCCGGG	1 cut(s)	231
TspRI	CASTG	1 cut(s)	531
Tth111I	GACNNNGTC	1 cut(s)	151
VpaK11BI	GGWCC	5 cut(s)	169, 220, 469, 707, 719
XapI	RAATTY	2 cut(s)	448, 728
XceI	RCATGY	1 cut(s)	766
XhoI	CTCGAG	1 cut(s)	748
XmaI	CCCGGG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.