Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0012201

Physical Location & Seq

Genomic Coordinates Forward (+)

17247484 .. 17249527

Gene Structure 2044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g12070.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGTAATCGGGTCGGAGCCGGGCGGTGGGAGCTCCGATTCCGCCGGAGGATGGGGCGTGGCGCGCGGGTTGGTGGTTAAGACGCTGGTGCTGATAGGCGGAGTTCTGCTGCTGAAGCGACTTACCAAGTCCACCACCCGGTGGGACCACGCCCGCCTGGTTACCCGTTCTCTTTCCGGCGAGAAGTTCTCCAAAGACCAAGCGGCCAGAGATCCTGACCACTACTTCAACATTAGAATGGTAACTTGCCCAGCAGCTGAAATGGTGGATGGTTCTAAGGTCTTGTACTTTGAACAAGCTTTTTGGAGGACTCCCCAGAAGCCGTTTCGACAAAGATTTTATATGGTGAAGCCTTGCCCGAAAGAGTTGAAATGTGATGTTGAGCTAAGCTCATATGCAATCAGAGACGTGGAGGAGTACAAGAATTTCTGTGATCGCTCAAAAGATCAGCGACCGCTTCCTGAAGAAGTTATTAGGGACATTGCAGAGCATTTGACAACAATACATCTGAAACGTTGTGAGCGTGGGAAACGCTGCTTGTATGAAGGTTCAACTCCGCCTGACAGCTTTCCAAATTCATGGAATGGAGCAGCGTACTGTACATCGGAACTTGCAATTCATAAAAATAATGAGATACAAGCCTGGGATCGGGGATTTGATGCTGATGGAAATCAGGTTTGGGGTCCAAAGGAAGGTCCGTACGAATTCAAGCCTGTGCCGGCCTCTAGTACCAATGACATGTTTTCTTCTTTAAATTTTCCTATCCAGCAGTCTATGGAGAAAAGAATAGAGGGTTCATTTGTCTTGCAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0006979 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009607 GO:0009615 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0010020 GO:0016020 GO:0016032 GO:0016043 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0040011 GO:0042170 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044000 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044766 GO:0046739 GO:0046741 GO:0046794 GO:0048285 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051302 GO:0051701 GO:0051704 GO:0051707 GO:0051814 GO:0052126 GO:0052192 GO:0065007 GO:0071840 GO:0098586 GO:0098588 GO:0098805 GO:1901700 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CpeT

Protein Analysis

272

Amino Acids

30.69

Weight (kDa)

7.58

Isoelectric Point (pI)

49.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51020
fragaria_vesca	FvH4_5g09710 FvH4_5g09710
malus_domestica	MD06G1129000.v1.1 MD14G1145900.v1.1
prunus_persica	Prupe.5G140300_v2.0.a1
pyrus_communis	pycom06g12070 pycom14g12090
rosa_chinensis	RchiOBHm_Chr7g0188531
rosa_laevigata	RLG00000004686
rosa_multiflora	Rmu_sc0001576.1_g000009 Rmu_sc0016427.1_g000007
rosa_roxburghii	Rroxscaffold_3G00266330
rosa_rugosa	Rorug06G0491000
rosa_samantha	Rh7AG095900 Rh7BG097700 Rh7CG098500 Rh7DG097800
rosa_wichuraiana	Rw7G008280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	141
AccII	CGCG	2 cut(s)	64, 66
AciI	CCGC	8 cut(s)	24, 42, 66, 99, 154, 203, 455, 557
AclI	AACGTT	1 cut(s)	514
AclWI	GGATC	2 cut(s)	206, 654
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	4 cut(s)	424, 574, 704, 754
AcuI	CTGAAG	2 cut(s)	134, 483
AdeI	CACNNNGTG	1 cut(s)	141
AfaI	GTAC	6 cut(s)	287, 419, 596, 601, 701, 730
AfiI	CCNNNNNNNGG	6 cut(s)	26, 51, 138, 141, 648, 692
AflIII	ACRYGT	1 cut(s)	738
AgsI	TTSAA	5 cut(s)	229, 293, 370, 552, 709
AjiI	CACGTC	1 cut(s)	409
AjnI	CCWGG	2 cut(s)	156, 641
AjuI	GAANNNNNNNTTGG	2 cut(s)	661, 693
AluBI	AGCT	6 cut(s)	33, 257, 299, 385, 390, 567
AluI	AGCT	6 cut(s)	33, 257, 299, 385, 390, 567
Alw21I	GWGCWC	1 cut(s)	35
Alw26I	GTCTC	1 cut(s)	399
AlwI	GGATC	2 cut(s)	206, 654
AlwNI	CAGNNNCTG	1 cut(s)	257
AoxI	GGCC	2 cut(s)	204, 720
ApeKI	GCWGC	4 cut(s)	109, 254, 534, 590
ApoI	RAATTY	4 cut(s)	424, 574, 704, 754
AspLEI	GCGC	2 cut(s)	64, 66
AspS9I	GGNCC	3 cut(s)	145, 683, 695
AsuC2I	CCSGG	2 cut(s)	21, 139
AsuHPI	GGTGA	1 cut(s)	358
AvaII	GGWCC	3 cut(s)	145, 683, 695
BanII	GRGCYC	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	35
BbvI	GCAGC	4 cut(s)	96, 266, 521, 602
BccI	CCATC	3 cut(s)	45, 263, 659
BceAI	ACGGC	1 cut(s)	307
BciT130I	CCWGG	2 cut(s)	158, 643
BcnI	CCSGG	2 cut(s)	21, 139
BcoDI	GTCTC	1 cut(s)	399
BfaI	CTAG	1 cut(s)	726
BisI	GCNGC	5 cut(s)	110, 204, 255, 535, 591
BlpI	GCTNAGC	1 cut(s)	386
BlsI	GCNGC	5 cut(s)	111, 205, 256, 536, 592
Bme1390I	CCNGG	4 cut(s)	21, 139, 158, 643
Bme18I	GGWCC	3 cut(s)	145, 683, 695
BmgBI	CACGTC	1 cut(s)	409
BmgT120I	GGNCC	3 cut(s)	145, 683, 695
BmiI	GGNNCC	3 cut(s)	18, 146, 684
BmrFI	CCNGG	4 cut(s)	21, 139, 158, 643
BmsI	GCATC	1 cut(s)	649
BplI	GAGNNNNNCTC	4 cut(s)	173, 205, 374, 406
Bpu1102I	GCTNAGC	1 cut(s)	386
BpuMI	CCSGG	2 cut(s)	21, 139
BsaBI	GATNNNNATC	1 cut(s)	669
BsaJI	CCNNGG	1 cut(s)	642
Bsc4I	CCNNNNNNNGG	6 cut(s)	26, 51, 138, 141, 648, 692
Bse118I	RCCGGY	1 cut(s)	718
Bse3DI	GCAATG	1 cut(s)	480
Bse8I	GATNNNNATC	1 cut(s)	669
BseBI	CCWGG	2 cut(s)	158, 643
BseDI	CCNNGG	1 cut(s)	642
BseGI	GGATG	2 cut(s)	56, 274
BseJI	GATNNNNATC	1 cut(s)	669
BseLI	CCNNNNNNNGG	6 cut(s)	26, 51, 138, 141, 648, 692
BseMI	GCAATG	1 cut(s)	480
BsePI	GCGCGC	1 cut(s)	62
BseRI	GAGGAG	1 cut(s)	428
BseXI	GCAGC	4 cut(s)	96, 266, 521, 602
BseYI	CCCAGC	1 cut(s)	250
Bsh1236I	CGCG	2 cut(s)	64, 66
Bsh1285I	CGRYCG	1 cut(s)	455
BshFI	GGCC	2 cut(s)	206, 722
BsiEI	CGRYCG	1 cut(s)	455
BsiHKAI	GWGCWC	1 cut(s)	35
BsiSI	CCGG	5 cut(s)	20, 45, 139, 177, 719
BsiWI	CGTACG	1 cut(s)	699
BslFI	GGGAC	2 cut(s)	158, 491
BslI	CCNNNNNNNGG	6 cut(s)	26, 51, 138, 141, 648, 692
BsmAI	GTCTC	1 cut(s)	399
BsmBI	CGTCTC	1 cut(s)	399
BsmFI	GGGAC	2 cut(s)	158, 491
BsnI	GGCC	2 cut(s)	206, 722
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp1407I	TGTACA	1 cut(s)	599
Bsp143I	GATC	4 cut(s)	211, 433, 445, 646
Bsp1720I	GCTNAGC	1 cut(s)	386
BspACI	CCGC	8 cut(s)	24, 42, 66, 99, 154, 203, 455, 557
BspANI	GGCC	2 cut(s)	206, 722
BspFNI	CGCG	2 cut(s)	64, 66
BspLI	GGNNCC	3 cut(s)	18, 146, 684
BspPI	GGATC	2 cut(s)	206, 654
BsrDI	GCAATG	1 cut(s)	480
BsrFI	RCCGGY	1 cut(s)	718
BsrGI	TGTACA	1 cut(s)	599
BssAI	RCCGGY	1 cut(s)	718
BssECI	CCNNGG	1 cut(s)	642
BssHII	GCGCGC	1 cut(s)	62
BssMI	GATC	4 cut(s)	211, 433, 445, 646
Bst2UI	CCWGG	2 cut(s)	158, 643
Bst4CI	ACNGT	1 cut(s)	599
BstAUI	TGTACA	1 cut(s)	599
BstC8I	GCNNGC	3 cut(s)	64, 154, 720
BstDEI	CTNAG	2 cut(s)	276, 386
BstEII	GGTNACC	1 cut(s)	160
BstF5I	GGATG	2 cut(s)	56, 274
BstFNI	CGCG	2 cut(s)	64, 66
BstHHI	GCGC	2 cut(s)	64, 66
BstKTI	GATC	4 cut(s)	214, 436, 448, 649
BstMAI	GTCTC	1 cut(s)	399
BstMBI	GATC	4 cut(s)	211, 433, 445, 646
BstMCI	CGRYCG	1 cut(s)	455
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 63, 115
BstNI	CCWGG	2 cut(s)	158, 643
BstNSI	RCATGY	1 cut(s)	742
BstPI	GGTNACC	1 cut(s)	160
BstSCI	CCNGG	4 cut(s)	19, 137, 156, 641
BstUI	CGCG	2 cut(s)	64, 66
BstV1I	GCAGC	4 cut(s)	96, 266, 521, 602
BstX2I	RGATCY	1 cut(s)	211
BstXI	CCANNNNNNTGG	1 cut(s)	579
BstYI	RGATCY	1 cut(s)	211
BsuRI	GGCC	2 cut(s)	206, 722
BtrI	CACGTC	1 cut(s)	409
BtsCI	GGATG	2 cut(s)	56, 274
Cac8I	GCNNGC	3 cut(s)	64, 154, 720
CaiI	CAGNNNCTG	1 cut(s)	257
CfoI	GCGC	2 cut(s)	64, 66
Cfr10I	RCCGGY	1 cut(s)	718
Cfr13I	GGNCC	3 cut(s)	145, 683, 695
CseI	GACGC	1 cut(s)	91
Csp6I	GTAC	6 cut(s)	286, 418, 595, 600, 700, 729
CviAII	CATG	2 cut(s)	579, 739
CviQI	GTAC	6 cut(s)	286, 418, 595, 600, 700, 729
DdeI	CTNAG	2 cut(s)	276, 386
DpnI	GATC	4 cut(s)	213, 435, 447, 648
DpnII	GATC	4 cut(s)	211, 433, 445, 646
DraI	TTTAAA	1 cut(s)	753
DraIII	CACNNNGTG	1 cut(s)	141
EaeI	YGGCCR	1 cut(s)	204
EciI	GGCGGA	3 cut(s)	31, 114, 546
Ecl136II	GAGCTC	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	35
Eco47I	GGWCC	3 cut(s)	145, 683, 695
Eco53kI	GAGCTC	1 cut(s)	33
Eco57I	CTGAAG	2 cut(s)	134, 483
Eco91I	GGTNACC	1 cut(s)	160
EcoICRI	GAGCTC	1 cut(s)	33
EcoO65I	GGTNACC	1 cut(s)	160
EcoRI	GAATTC	1 cut(s)	704
EcoRII	CCWGG	2 cut(s)	156, 641
EcoT38I	GRGCYC	1 cut(s)	35
Esp3I	CGTCTC	1 cut(s)	399
FaeI	CATG	2 cut(s)	582, 742
FaiI	YATR	9 cut(s)	342, 344, 394, 396, 543, 580, 621, 740, 776
FaqI	GGGAC	2 cut(s)	158, 491
FatI	CATG	2 cut(s)	578, 738
FauI	CCCGC	2 cut(s)	59, 161
FauNDI	CATATG	1 cut(s)	394
Fnu4HI	GCNGC	5 cut(s)	110, 204, 255, 535, 591
FokI	GGATG	2 cut(s)	63, 281
FriOI	GRGCYC	1 cut(s)	35
Fsp4HI	GCNGC	5 cut(s)	110, 204, 255, 535, 591
FspBI	CTAG	1 cut(s)	726
GlaI	GCGC	2 cut(s)	63, 65
GluI	GCNGC	5 cut(s)	110, 204, 255, 535, 591
GsaI	CCCAGC	1 cut(s)	254
HaeIII	GGCC	2 cut(s)	206, 722
HapII	CCGG	5 cut(s)	20, 45, 139, 177, 719
HgaI	GACGC	1 cut(s)	91
HhaI	GCGC	2 cut(s)	64, 66
Hin1II	CATG	2 cut(s)	582, 742
Hin6I	GCGC	2 cut(s)	62, 64
HinP1I	GCGC	2 cut(s)	62, 64
HindIII	AAGCTT	1 cut(s)	297
HinfI	GANTC	2 cut(s)	38, 310
HpaII	CCGG	5 cut(s)	20, 45, 139, 177, 719
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	1 cut(s)	132
Hpy188I	TCNGA	5 cut(s)	16, 37, 404, 510, 607
Hpy188III	TCNNGA	2 cut(s)	215, 461
Hpy8I	GTNNAC	1 cut(s)	132
HpyAV	CCTTC	2 cut(s)	539, 686
HpyCH4III	ACNGT	1 cut(s)	599
HpyCH4IV	ACGT	2 cut(s)	408, 514
HpyCH4V	TGCA	4 cut(s)	398, 485, 614, 808
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 63, 115
HpyF3I	CTNAG	2 cut(s)	276, 386
HpySE526I	ACGT	2 cut(s)	408, 514
Hsp92II	CATG	2 cut(s)	582, 742
HspAI	GCGC	2 cut(s)	62, 64
KroI	GCCGGC	1 cut(s)	718
KroNI	GCCGGC	1 cut(s)	720
Kzo9I	GATC	4 cut(s)	211, 433, 445, 646
LmnI	GCTCC	4 cut(s)	16, 30, 38, 587
Lsp1109I	GCAGC	4 cut(s)	96, 266, 521, 602
LweI	GCATC	1 cut(s)	649
MaeI	CTAG	1 cut(s)	726
MaeII	ACGT	2 cut(s)	408, 514
MaeIII	GTNAC	2 cut(s)	160, 241
MalI	GATC	4 cut(s)	213, 435, 447, 648
MboI	GATC	4 cut(s)	211, 433, 445, 646
MboII	GAAGA	2 cut(s)	476, 738
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	5 cut(s)	424, 574, 615, 704, 754
MlyI	GAGTC	1 cut(s)	304
MnlI	CCTC	5 cut(s)	41, 300, 406, 733, 784
MroNI	GCCGGC	1 cut(s)	718
MseI	TTAA	2 cut(s)	78, 752
MslI	CAYNNNNRTG	1 cut(s)	236
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	5 cut(s)	20, 45, 139, 177, 719
MspR9I	CCNGG	4 cut(s)	21, 139, 158, 643
MvaI	CCWGG	2 cut(s)	158, 643
MvnI	CGCG	2 cut(s)	64, 66
MwoI	GCNNNNNNNGC	3 cut(s)	30, 63, 115
NaeI	GCCGGC	1 cut(s)	720
NciI	CCSGG	2 cut(s)	21, 139
NdeI	CATATG	1 cut(s)	394
NdeII	GATC	4 cut(s)	211, 433, 445, 646
NgoMIV	GCCGGC	1 cut(s)	718
NlaIII	CATG	2 cut(s)	582, 742
NlaIV	GGNNCC	3 cut(s)	18, 146, 684
NspI	RCATGY	1 cut(s)	742
PauI	GCGCGC	1 cut(s)	62
PciI	ACATGT	1 cut(s)	738
PcsI	WCGNNNNNNNCGW	1 cut(s)	520
PdiI	GCCGGC	1 cut(s)	720
PfeI	GAWTC	1 cut(s)	38
Pfl23II	CGTACG	1 cut(s)	699
PflMI	CCANNNNNTGG	1 cut(s)	141
PkrI	GCNGC	5 cut(s)	111, 205, 256, 536, 592
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
PscI	ACATGT	1 cut(s)	738
Psp124BI	GAGCTC	1 cut(s)	35
Psp1406I	AACGTT	1 cut(s)	514
Psp6I	CCWGG	2 cut(s)	156, 641
PspEI	GGTNACC	1 cut(s)	160
PspFI	CCCAGC	1 cut(s)	250
PspGI	CCWGG	2 cut(s)	156, 641
PspLI	CGTACG	1 cut(s)	699
PspN4I	GGNNCC	3 cut(s)	18, 146, 684
PspPI	GGNCC	3 cut(s)	145, 683, 695
PstNI	CAGNNNCTG	1 cut(s)	257
PsuI	RGATCY	1 cut(s)	211
PteI	GCGCGC	1 cut(s)	62
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	6 cut(s)	287, 419, 596, 601, 701, 730
RsaNI	GTAC	6 cut(s)	286, 418, 595, 600, 700, 729
RseI	CAYNNNNRTG	1 cut(s)	236
SacI	GAGCTC	1 cut(s)	35
SaqAI	TTAA	2 cut(s)	78, 752
SatI	GCNGC	5 cut(s)	110, 204, 255, 535, 591
Sau3AI	GATC	4 cut(s)	211, 433, 445, 646
Sau96I	GGNCC	3 cut(s)	145, 683, 695
SchI	GAGTC	1 cut(s)	304
ScrFI	CCNGG	4 cut(s)	21, 139, 158, 643
SduI	GDGCHC	1 cut(s)	35
SfaNI	GCATC	1 cut(s)	649
SinI	GGWCC	3 cut(s)	145, 683, 695
SmiMI	CAYNNNNRTG	1 cut(s)	236
Sse9I	AATT	5 cut(s)	424, 574, 615, 704, 754
SsiI	CCGC	8 cut(s)	24, 42, 66, 99, 154, 203, 455, 557
SspMI	CTAG	1 cut(s)	726
SstI	GAGCTC	1 cut(s)	35
StyD4I	CCNGG	4 cut(s)	19, 137, 156, 641
TaaI	ACNGT	1 cut(s)	599
TaiI	ACGT	2 cut(s)	411, 517
TaqI	TCGA	1 cut(s)	328
TasI	AATT	5 cut(s)	424, 574, 615, 704, 754
TatI	WGTACW	3 cut(s)	285, 417, 599
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	1 cut(s)	38
Tru1I	TTAA	2 cut(s)	78, 752
Tru9I	TTAA	2 cut(s)	78, 752
TseI	GCWGC	4 cut(s)	109, 254, 534, 590
TspDTI	ATGAA	4 cut(s)	558, 567, 608, 786
TspGWI	ACGGA	1 cut(s)	687
Van91I	CCANNNNNTGG	1 cut(s)	141
VpaK11BI	GGWCC	3 cut(s)	145, 683, 695
XapI	RAATTY	4 cut(s)	424, 574, 704, 754
XceI	RCATGY	1 cut(s)	742
XspI	CTAG	1 cut(s)	726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.