Rmu_sc0016427.1_g000007

Chromophore lyase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016427.1
Physical Location & Seq
Forward (+)
37116 .. 42819
5704 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016427.1_g000007.1.cds

Sequence Viewer

Length: 1326 bp
atggattggcagagagctccaaagaaaagcgatagccgtaggaactactatgacatccttgaagtgcctaagaattcttcacaagatgatctgaaaaaggcttatagaagagcagccatgaagcaccatcccgataagggtggtgatgtagaaaagttcaaagagttgggccatgcatacaaggttctgtgcgatccacagcaacgtgtcatctatgaccgggacggtgaggatcagtttggcgaggacatgtacggtggggaccggtatggcaaggaccaatacggtgagtacaagtacagccagaacagatacggtcaggactggtactggtactggtacggttcgaaccaatacggtcaggactggtatgggaatcggtacgaccagggctggtacggccagaaccggtatggtaaggaaaagtatagcaaggaccgagatcagactggcgagcaaagggatgtagttagactaatctggctttgtttcaccgaaatgggtatcgggtcggagtcgggtagcgggagcggctcggacgactcgtcgtcttcgggaggatggagcgtggcgcgcgggttagtggtgaagacggtggttttgatcggcggagctctgttgctgaagcgactgaccaagtccacgacccggtgggaccccgcccgccacgtcacccgctccctctccggtgagaagttctccaaggaccaagccgccagggatcctgaccactacttcaacatcagaatgagcagttgccctgcagctgagatggtggacggttctaaagttttgtactttgaacaagcgttttggaggagtcctaagaagccatttaggcagagattttatatggtgaagccttgcccgaaagagttgaagtgtgatgttgaggtaagctcgtatgcaattagggatgcggaggagtacaagaatttttgtgatcgctcaaaggaccagcgccccctgcctgaagaagttatcggggacattgcagagcatttgacaacagtgcatcttaaacgttgtgagcgtggaaaacgctgcttatatgaagggtcaactccacctgccagtttccccaattcatggaatggagcatcatactgtacttcggaacttgcaattcttaaaaacaatgagatacattcatgggataggggatataacgatgaaggaaatcaagtttggggaccaaaggaaggtccgtatgaattcaagcccgcacctgcctccagtatgaatgacatgttttcttctttaaattttcctattcagcagtctatcgagaaaagaatagagggttcatttgtcttgcaagaatga

Protein Analysis

441

Amino Acids

51.05

Weight (kDa)

7.52

Isoelectric Point (pI)

47.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012201)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1078, 1237
Acc36I ACCTGC 2 cut(s) 1078, 1237
AccB7I CCANNNNNTGG 1 cut(s) 1089
AccBSI CCGCTC 2 cut(s) 531, 678
AccII CGCG 2 cut(s) 574, 576
AclI AACGTT 1 cut(s) 1024
AclWI GGATC 4 cut(s) 188, 240, 716, 729
AcoI YGGCCR 1 cut(s) 400
AcsI RAATTY 4 cut(s) 73, 934, 1214, 1264
AcuI CTGAAG 2 cut(s) 644, 993
AfiI CCNNNNNNNGG 4 cut(s) 137, 648, 1089, 1202
AflIII ACRYGT 3 cut(s) 205, 249, 1248
AgeI ACCGGT 2 cut(s) 264, 408
AgsI TTSAA 6 cut(s) 62, 160, 739, 803, 880, 1219
AhdI GACNNNNNGTC 2 cut(s) 544, 547
AjiI CACGTC 1 cut(s) 670
AjnI CCWGG 2 cut(s) 387, 716
AjuI GAANNNNNNNTTGG 2 cut(s) 1171, 1203
AluBI AGCT 4 cut(s) 17, 614, 767, 900
AluI AGCT 4 cut(s) 17, 614, 767, 900
Alw21I GWGCWC 2 cut(s) 19, 616
AlwI GGATC 4 cut(s) 188, 240, 716, 729
AoxI GGCC 2 cut(s) 169, 400
ApeKI GCWGC 3 cut(s) 113, 764, 1044
ApoI RAATTY 4 cut(s) 73, 934, 1214, 1264
ArsI GACNNNNNNTTYG 2 cut(s) 583, 615
AsiGI ACCGGT 2 cut(s) 264, 408
AspLEI GCGC 3 cut(s) 574, 576, 963
AspS9I GGNCC 9 cut(s) 169, 262, 277, 436, 655, 706, 955, 1193, 1205
AsuC2I CCSGG 2 cut(s) 221, 649
AsuHPI GGTGA 8 cut(s) 155, 239, 299, 484, 598, 664, 701, 868
AsuII TTCGAA 1 cut(s) 347
AvaII GGWCC 8 cut(s) 262, 277, 436, 655, 706, 955, 1193, 1205
BamHI GGATCC 1 cut(s) 721
BanII GRGCYC 2 cut(s) 19, 616
BbsI GAAGAC 2 cut(s) 543, 596
Bbv12I GWGCWC 2 cut(s) 19, 616
BbvI GCAGC 3 cut(s) 125, 776, 1031
BccI CCATC 3 cut(s) 135, 555, 766
BceAI ACGGC 2 cut(s) 21, 415
BciT130I CCWGG 2 cut(s) 389, 718
BcnI CCSGG 2 cut(s) 221, 649
BfmI CTRYAG 1 cut(s) 762
BfoI RGCGCY 1 cut(s) 964
BfuAI ACCTGC 2 cut(s) 1078, 1237
BglI GCCNNNNNGGC 1 cut(s) 838
BisI GCNGC 5 cut(s) 114, 532, 714, 765, 1045
BlsI GCNGC 5 cut(s) 115, 533, 715, 766, 1046
Bme1390I CCNGG 4 cut(s) 221, 389, 649, 718
Bme18I GGWCC 8 cut(s) 262, 277, 436, 655, 706, 955, 1193, 1205
BmeRI GACNNNNNGTC 2 cut(s) 544, 547
BmgBI CACGTC 1 cut(s) 670
BmgT120I GGNCC 9 cut(s) 169, 262, 277, 436, 655, 706, 955, 1193, 1205
BmiI GGNNCC 5 cut(s) 263, 656, 657, 723, 1194
BmrFI CCNGG 4 cut(s) 221, 389, 649, 718
BmsI GCATC 3 cut(s) 907, 1024, 1109
BpiI GAAGAC 2 cut(s) 543, 596
BplI GAGNNNNNCTC 4 cut(s) 683, 715, 884, 916
BpmI CTGGAG 1 cut(s) 1219
Bpu14I TTCGAA 1 cut(s) 347
BpuMI CCSGG 2 cut(s) 221, 649
BsaJI CCNNGG 3 cut(s) 388, 702, 717
BsaWI WCCGGW 3 cut(s) 264, 408, 686
Bsc4I CCNNNNNNNGG 4 cut(s) 137, 648, 1089, 1202
Bse118I RCCGGY 2 cut(s) 264, 408
Bse1I ACTGG 7 cut(s) 329, 335, 341, 371, 454, 1074, 1236
Bse3DI GCAATG 1 cut(s) 990
BseBI CCWGG 2 cut(s) 389, 718
BseDI CCNNGG 3 cut(s) 388, 702, 717
BseGI GGATG 5 cut(s) 54, 127, 469, 566, 922
BseLI CCNNNNNNNGG 4 cut(s) 137, 648, 1089, 1202
BseMI GCAATG 1 cut(s) 990
BseMII CTCAG 1 cut(s) 759
BseNI ACTGG 7 cut(s) 329, 335, 341, 371, 454, 1074, 1236
BsePI GCGCGC 1 cut(s) 572
BseRI GAGGAG 2 cut(s) 832, 938
BseXI GCAGC 3 cut(s) 125, 776, 1031
Bsh1236I CGCG 2 cut(s) 574, 576
BshFI GGCC 2 cut(s) 171, 402
BshTI ACCGGT 2 cut(s) 264, 408
BsiHKAI GWGCWC 2 cut(s) 19, 616
BsiSI CCGG 5 cut(s) 220, 265, 409, 649, 687
BslFI GGGAC 5 cut(s) 236, 275, 668, 1001, 1206
BslI CCNNNNNNNGG 4 cut(s) 137, 648, 1089, 1202
BsmFI GGGAC 5 cut(s) 236, 275, 668, 1001, 1206
BsnI GGCC 2 cut(s) 171, 402
Bsp119I TTCGAA 1 cut(s) 347
Bsp1286I GDGCHC 2 cut(s) 19, 616
Bsp143I GATC 7 cut(s) 88, 193, 232, 442, 603, 721, 943
BspANI GGCC 2 cut(s) 171, 402
BspCNI CTCAG 1 cut(s) 760
BspFNI CGCG 2 cut(s) 574, 576
BspLI GGNNCC 5 cut(s) 263, 656, 657, 723, 1194
BspMAI CTGCAG 1 cut(s) 766
BspMI ACCTGC 2 cut(s) 1078, 1237
BspPI GGATC 4 cut(s) 188, 240, 716, 729
BspQI GCTCTTC 1 cut(s) 103
BspT104I TTCGAA 1 cut(s) 347
BsrBI CCGCTC 2 cut(s) 531, 678
BsrDI GCAATG 1 cut(s) 990
BsrFI RCCGGY 2 cut(s) 264, 408
BsrI ACTGG 7 cut(s) 329, 335, 341, 371, 454, 1074, 1236
BssAI RCCGGY 2 cut(s) 264, 408
BssECI CCNNGG 3 cut(s) 388, 702, 717
BssHII GCGCGC 1 cut(s) 572
BssMI GATC 7 cut(s) 88, 193, 232, 442, 603, 721, 943
BssT1I CCWWGG 1 cut(s) 702
Bst2UI CCWGG 2 cut(s) 389, 718
Bst6I CTCTTC 1 cut(s) 103
BstBI TTCGAA 1 cut(s) 347
BstC8I GCNNGC 4 cut(s) 455, 574, 664, 1224
BstDEI CTNAG 3 cut(s) 69, 768, 825
BstF5I GGATG 5 cut(s) 54, 127, 469, 566, 922
BstFNI CGCG 2 cut(s) 574, 576
BstH2I RGCGCY 1 cut(s) 964
BstHHI GCGC 3 cut(s) 574, 576, 963
BstKTI GATC 7 cut(s) 91, 196, 235, 445, 606, 724, 946
BstMBI GATC 7 cut(s) 88, 193, 232, 442, 603, 721, 943
BstMWI GCNNNNNNNGC 5 cut(s) 399, 531, 573, 838, 967
BstNI CCWGG 2 cut(s) 389, 718
BstNSI RCATGY 2 cut(s) 253, 1252
BstSCI CCNGG 4 cut(s) 219, 387, 647, 716
BstSFI CTRYAG 1 cut(s) 762
BstUI CGCG 2 cut(s) 574, 576
BstV1I GCAGC 3 cut(s) 125, 776, 1031
BstV2I GAAGAC 2 cut(s) 543, 596
BstX2I RGATCY 1 cut(s) 721
BstYI RGATCY 1 cut(s) 721
BsuRI GGCC 2 cut(s) 171, 402
BtrI CACGTC 1 cut(s) 670
BtsCI GGATG 5 cut(s) 54, 127, 469, 566, 922
BtsIMutI CAGTG 1 cut(s) 1017
BveI ACCTGC 2 cut(s) 1078, 1237
Cac8I GCNNGC 4 cut(s) 455, 574, 664, 1224
CfoI GCGC 3 cut(s) 574, 576, 963
Cfr10I RCCGGY 2 cut(s) 264, 408
Cfr13I GGNCC 9 cut(s) 169, 262, 277, 436, 655, 706, 955, 1193, 1205
CspAI ACCGGT 2 cut(s) 264, 408
CviAII CATG 6 cut(s) 118, 173, 250, 1089, 1152, 1249
DdeI CTNAG 3 cut(s) 69, 768, 825
DpnI GATC 7 cut(s) 90, 195, 234, 444, 605, 723, 945
DpnII GATC 7 cut(s) 88, 193, 232, 442, 603, 721, 943
DraI TTTAAA 1 cut(s) 1263
DriI GACNNNNNGTC 2 cut(s) 544, 547
EaeI YGGCCR 1 cut(s) 400
Eam1104I CTCTTC 1 cut(s) 103
Eam1105I GACNNNNNGTC 2 cut(s) 544, 547
EarI CTCTTC 1 cut(s) 103
EciI GGCGGA 1 cut(s) 624
Ecl136II GAGCTC 2 cut(s) 17, 614
Eco130I CCWWGG 1 cut(s) 702
Eco24I GRGCYC 2 cut(s) 19, 616
Eco47I GGWCC 8 cut(s) 262, 277, 436, 655, 706, 955, 1193, 1205
Eco53kI GAGCTC 2 cut(s) 17, 614
Eco57I CTGAAG 2 cut(s) 644, 993
EcoICRI GAGCTC 2 cut(s) 17, 614
EcoO109I RGGNCCY 1 cut(s) 655
EcoRI GAATTC 2 cut(s) 73, 1214
EcoRII CCWGG 2 cut(s) 387, 716
EcoT14I CCWWGG 1 cut(s) 702
EcoT22I ATGCAT 1 cut(s) 178
EcoT38I GRGCYC 2 cut(s) 19, 616
ErhI CCWWGG 1 cut(s) 702
FaeI CATG 6 cut(s) 121, 176, 253, 1092, 1155, 1252
FaqI GGGAC 5 cut(s) 236, 275, 668, 1001, 1206
FatI CATG 6 cut(s) 117, 172, 249, 1088, 1151, 1248
FauI CCCGC 6 cut(s) 518, 569, 667, 671, 683, 1231
Fnu4HI GCNGC 5 cut(s) 114, 532, 714, 765, 1045
FokI GGATG 5 cut(s) 41, 114, 476, 573, 929
FriOI GRGCYC 2 cut(s) 19, 616
Fsp4HI GCNGC 5 cut(s) 114, 532, 714, 765, 1045
GlaI GCGC 3 cut(s) 573, 575, 962
GluI GCNGC 5 cut(s) 114, 532, 714, 765, 1045
GsuI CTGGAG 1 cut(s) 1219
HaeII RGCGCY 1 cut(s) 964
HaeIII GGCC 2 cut(s) 171, 402
HapII CCGG 5 cut(s) 220, 265, 409, 649, 687
HhaI GCGC 3 cut(s) 574, 576, 963
Hin1II CATG 6 cut(s) 121, 176, 253, 1092, 1155, 1252
Hin6I GCGC 3 cut(s) 572, 574, 961
HinP1I GCGC 3 cut(s) 572, 574, 961
HincII GTYRAC 1 cut(s) 1062
HindII GTYRAC 1 cut(s) 1062
HinfI GANTC 4 cut(s) 376, 515, 542, 820
HpaII CCGG 5 cut(s) 220, 265, 409, 649, 687
HphI GGTGA 8 cut(s) 155, 239, 299, 484, 598, 664, 701, 868
Hpy166II GTNNAC 3 cut(s) 642, 778, 1062
Hpy188I TCNGA 6 cut(s) 93, 447, 514, 538, 746, 1117
Hpy188III TCNNGA 6 cut(s) 131, 320, 362, 555, 725, 1288
Hpy8I GTNNAC 3 cut(s) 642, 778, 1062
Hpy99I CGWCG 1 cut(s) 550
HpyAV CCTTC 3 cut(s) 1049, 1169, 1196
HpyCH4IV ACGT 3 cut(s) 205, 669, 1024
HpyCH4V TGCA 7 cut(s) 176, 764, 908, 995, 1015, 1124, 1318
HpyF10VI GCNNNNNNNGC 5 cut(s) 399, 531, 573, 838, 967
HpyF3I CTNAG 3 cut(s) 69, 768, 825
HpySE526I ACGT 3 cut(s) 205, 669, 1024
Hsp92II CATG 6 cut(s) 121, 176, 253, 1092, 1155, 1252
HspAI GCGC 3 cut(s) 572, 574, 961
KflI GGGWCCC 1 cut(s) 655
Kzo9I GATC 7 cut(s) 88, 193, 232, 442, 603, 721, 943
LguI GCTCTTC 1 cut(s) 103
LmnI GCTCC 6 cut(s) 22, 528, 564, 611, 683, 1097
Lsp1109I GCAGC 3 cut(s) 125, 776, 1031
LweI GCATC 3 cut(s) 907, 1024, 1109
MaeII ACGT 3 cut(s) 205, 669, 1024
MaeIII GTNAC 1 cut(s) 670
MalI GATC 7 cut(s) 90, 195, 234, 444, 605, 723, 945
MbiI CCGCTC 2 cut(s) 531, 678
MboI GATC 7 cut(s) 88, 193, 232, 442, 603, 721, 943
MboII GAAGA 6 cut(s) 69, 120, 543, 601, 986, 1248
MflI RGATCY 1 cut(s) 721
MhlI GDGCHC 2 cut(s) 19, 616
MluCI AATT 7 cut(s) 73, 909, 934, 1084, 1125, 1214, 1264
MlyI GAGTC 3 cut(s) 524, 536, 829
MmeI TCCRAC 1 cut(s) 492
MnlI CCTC 9 cut(s) 223, 238, 551, 692, 810, 886, 916, 1243, 1294
Mph1103I ATGCAT 1 cut(s) 178
MseI TTAA 3 cut(s) 1020, 1131, 1262
MslI CAYNNNNRTG 2 cut(s) 497, 746
MspA1I CMGCKG 1 cut(s) 767
MspI CCGG 5 cut(s) 220, 265, 409, 649, 687
MspR9I CCNGG 4 cut(s) 221, 389, 649, 718
MvaI CCWGG 2 cut(s) 389, 718
MvnI CGCG 2 cut(s) 574, 576
MwoI GCNNNNNNNGC 5 cut(s) 399, 531, 573, 838, 967
NciI CCSGG 2 cut(s) 221, 649
NdeII GATC 7 cut(s) 88, 193, 232, 442, 603, 721, 943
NlaIII CATG 6 cut(s) 121, 176, 253, 1092, 1155, 1252
NlaIV GGNNCC 5 cut(s) 263, 656, 657, 723, 1194
NmuCI GTSAC 1 cut(s) 670
NsiI ATGCAT 1 cut(s) 178
NspI RCATGY 2 cut(s) 253, 1252
NspV TTCGAA 1 cut(s) 347
PaqCI CACCTGC 2 cut(s) 1078, 1237
PauI GCGCGC 1 cut(s) 572
PciI ACATGT 2 cut(s) 249, 1248
PciSI GCTCTTC 1 cut(s) 103
PcsI WCGNNNNNNNCGW 2 cut(s) 542, 1030
PfeI GAWTC 1 cut(s) 376
PflFI GACNNNGTC 1 cut(s) 637
PflMI CCANNNNNTGG 1 cut(s) 1089
PinAI ACCGGT 2 cut(s) 264, 408
PkrI GCNGC 5 cut(s) 115, 533, 715, 766, 1046
PleI GAGTC 3 cut(s) 523, 536, 828
PpsI GAGTC 3 cut(s) 523, 536, 828
PpuMI RGGWCCY 1 cut(s) 655
PscI ACATGT 2 cut(s) 249, 1248
Psp124BI GAGCTC 2 cut(s) 19, 616
Psp1406I AACGTT 1 cut(s) 1024
Psp5II RGGWCCY 1 cut(s) 655
Psp6I CCWGG 2 cut(s) 387, 716
PspGI CCWGG 2 cut(s) 387, 716
PspN4I GGNNCC 5 cut(s) 263, 656, 657, 723, 1194
PspPI GGNCC 9 cut(s) 169, 262, 277, 436, 655, 706, 955, 1193, 1205
PspPPI RGGWCCY 1 cut(s) 655
PstI CTGCAG 1 cut(s) 766
PsuI RGATCY 1 cut(s) 721
PsyI GACNNNGTC 1 cut(s) 637
PteI GCGCGC 1 cut(s) 572
PvuII CAGCTG 1 cut(s) 767
RseI CAYNNNNRTG 2 cut(s) 497, 746
SacI GAGCTC 2 cut(s) 19, 616
SapI GCTCTTC 1 cut(s) 103
SaqAI TTAA 3 cut(s) 1020, 1131, 1262
SatI GCNGC 5 cut(s) 114, 532, 714, 765, 1045
Sau3AI GATC 7 cut(s) 88, 193, 232, 442, 603, 721, 943
Sau96I GGNCC 9 cut(s) 169, 262, 277, 436, 655, 706, 955, 1193, 1205
SchI GAGTC 3 cut(s) 524, 536, 829
ScrFI CCNGG 4 cut(s) 221, 389, 649, 718
SduI GDGCHC 2 cut(s) 19, 616
SfaNI GCATC 3 cut(s) 907, 1024, 1109
SfcI CTRYAG 1 cut(s) 762
SfuI TTCGAA 1 cut(s) 347
SinI GGWCC 8 cut(s) 262, 277, 436, 655, 706, 955, 1193, 1205
SmiMI CAYNNNNRTG 2 cut(s) 497, 746
Sse9I AATT 7 cut(s) 73, 909, 934, 1084, 1125, 1214, 1264
SstI GAGCTC 2 cut(s) 19, 616
StyD4I CCNGG 4 cut(s) 219, 387, 647, 716
StyI CCWWGG 1 cut(s) 702
TaiI ACGT 3 cut(s) 208, 672, 1027
TaqI TCGA 2 cut(s) 347, 1287
TaqII GACCGA 1 cut(s) 453
TasI AATT 7 cut(s) 73, 909, 934, 1084, 1125, 1214, 1264
TatI WGTACW 5 cut(s) 291, 297, 795, 927, 1109
TauI GCSGC 2 cut(s) 534, 716
TfiI GAWTC 1 cut(s) 376
Tru1I TTAA 3 cut(s) 1020, 1131, 1262
Tru9I TTAA 3 cut(s) 1020, 1131, 1262
TscAI CASTG 1 cut(s) 1017
TseFI GTSAC 1 cut(s) 670
TseI GCWGC 3 cut(s) 113, 764, 1044
Tsp45I GTSAC 1 cut(s) 670
TspDTI ATGAA 8 cut(s) 134, 1068, 1077, 1140, 1188, 1227, 1256, 1296
TspGWI ACGGA 1 cut(s) 1197
TspRI CASTG 1 cut(s) 1017
Tth111I GACNNNGTC 1 cut(s) 637
Van91I CCANNNNNTGG 1 cut(s) 1089
VpaK11BI GGWCC 8 cut(s) 262, 277, 436, 655, 706, 955, 1193, 1205
XapI RAATTY 4 cut(s) 73, 934, 1214, 1264
XceI RCATGY 2 cut(s) 253, 1252
XcmI CCANNNNNNNNNTGG 1 cut(s) 410
Zsp2I ATGCAT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.