Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0012201

Physical Location & Seq

Genomic Coordinates Reverse (-)

61441924 .. 61444002

Gene Structure 2079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004686

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGGTATCGGGTCGGAGTCGGGTAGCGGGAGCGGGAGCGGCTCGGACGACTCGTCGTCTTCGGGAGGATGGAGCGTGGCGCGGGGGTTAGTGGTGAAGACGGTGGTTTTGATCGGTGGAGCTCTGTTGCTGAAGCGACTGACCAAGTCCACAACCCGGTGGGACCACGCCCGCCACGTCACCCGCTCCCTCTCCGGCGAGAAGTTCTCCAAGGACCAAGCCGCAAGAGATCCTGACCACTACTTCAACATCAGAATGAGTAGTTGCCCTGCAGCTGAGATGGTGGACGGTTCTAAAGTTTTGTACTTTGAACAAGCTTTTTGGAGGAGTCCTCAGAAGCCATTTAGGCAGAGATTTTATATGGTGAAGCCTTGCCCGAAAGAGTTGAAGTGTGATGTTGAGGTAAGCTCGTATGCAATTAGAGATGCGGAGGAGTACAAGAATTTTTGTGATCGCTCAAAGGACCAGCGCCCCCTGCCTGAAGAAGTTATCGGGGACATTGCAGAGCATTTGACAACAGTGCATCTTAAACGTTGTGAGCGTGGAAAACGCTGCTTATATGAAGGGTCAACTCCACCTGCCAGTTTCCCTAATTCATGGAATGGAGCATCATACTGTACTTCGGAACTTGCAATTCTTAAAAACAATGAGATACATTCATGGGATAGGGGATATAACGATGAAGGAAATCAAGTTTGGGGACCAATGGAAGGTCCGTATGAATTCAAGCCCGCACCTGCCTCCAGTACGAATGACATGTTTTCTTCTTTAAATTTTCCTATTCAGCAGTCTATCGAGAAAAGAATAGAGGGTTCATTTGTCTTGCAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0006979 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009607 GO:0009615 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0010020 GO:0016020 GO:0016032 GO:0016043 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0040011 GO:0042170 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044000 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044766 GO:0046739 GO:0046741 GO:0046794 GO:0048285 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051302 GO:0051701 GO:0051704 GO:0051707 GO:0051814 GO:0052126 GO:0052192 GO:0065007 GO:0071840 GO:0098586 GO:0098588 GO:0098805 GO:1901700 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CpeT

Protein Analysis

278

Amino Acids

31.0

Weight (kDa)

6.61

Isoelectric Point (pI)

57.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CpeT	PF06206	60 - 243	1.4e-43	CpeT/CpcT family (DUF1001)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51020
fragaria_vesca	FvH4_5g09710 FvH4_5g09710
malus_domestica	MD06G1129000.v1.1 MD14G1145900.v1.1
prunus_persica	Prupe.5G140300_v2.0.a1
pyrus_communis	pycom06g12070 pycom14g12090
rosa_chinensis	RchiOBHm_Chr7g0188531
rosa_laevigata	RLG00000004686
rosa_multiflora	Rmu_sc0001576.1_g000009 Rmu_sc0016427.1_g000007
rosa_roxburghii	Rroxscaffold_3G00266330
rosa_rugosa	Rorug06G0491000
rosa_samantha	Rh7AG095900 Rh7BG097700 Rh7CG098500 Rh7DG097800
rosa_wichuraiana	Rw7G008280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	586, 745
Acc36I	ACCTGC	2 cut(s)	586, 745
AccBSI	CCGCTC	3 cut(s)	33, 39, 186
AccII	CGCG	1 cut(s)	82
AciI	CCGC	9 cut(s)	27, 33, 39, 82, 172, 184, 222, 428, 732
AclI	AACGTT	1 cut(s)	532
AclWI	GGATC	1 cut(s)	224
AcsI	RAATTY	3 cut(s)	442, 722, 772
AcuI	CTGAAG	2 cut(s)	152, 501
AfaI	GTAC	4 cut(s)	305, 437, 619, 748
AfiI	CCNNNNNNNGG	2 cut(s)	156, 710
AflIII	ACRYGT	1 cut(s)	756
AgsI	TTSAA	4 cut(s)	247, 311, 388, 727
AhdI	GACNNNNNGTC	2 cut(s)	52, 55
AjiI	CACGTC	1 cut(s)	178
AjuI	GAANNNNNNNTTGG	2 cut(s)	679, 711
AluBI	AGCT	4 cut(s)	122, 275, 317, 408
AluI	AGCT	4 cut(s)	122, 275, 317, 408
Alw21I	GWGCWC	1 cut(s)	124
AlwI	GGATC	1 cut(s)	224
ApeKI	GCWGC	2 cut(s)	272, 552
ApoI	RAATTY	3 cut(s)	442, 722, 772
ArsI	GACNNNNNNTTYG	2 cut(s)	91, 123
AspLEI	GCGC	2 cut(s)	82, 471
AspS9I	GGNCC	5 cut(s)	163, 214, 463, 701, 713
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	3 cut(s)	106, 172, 376
AvaII	GGWCC	5 cut(s)	163, 214, 463, 701, 713
BanII	GRGCYC	1 cut(s)	124
BbsI	GAAGAC	2 cut(s)	51, 104
Bbv12I	GWGCWC	1 cut(s)	124
BbvI	GCAGC	2 cut(s)	284, 539
BccI	CCATC	2 cut(s)	63, 274
BcnI	CCSGG	1 cut(s)	157
BfmI	CTRYAG	1 cut(s)	270
BfoI	RGCGCY	1 cut(s)	472
BfuAI	ACCTGC	2 cut(s)	586, 745
BglI	GCCNNNNNGGC	1 cut(s)	346
BisI	GCNGC	4 cut(s)	40, 222, 273, 553
BlsI	GCNGC	4 cut(s)	41, 223, 274, 554
Bme1390I	CCNGG	1 cut(s)	157
Bme18I	GGWCC	5 cut(s)	163, 214, 463, 701, 713
BmeRI	GACNNNNNGTC	2 cut(s)	52, 55
BmgBI	CACGTC	1 cut(s)	178
BmgT120I	GGNCC	5 cut(s)	163, 214, 463, 701, 713
BmiI	GGNNCC	2 cut(s)	164, 702
BmrFI	CCNGG	1 cut(s)	157
BmsI	GCATC	3 cut(s)	415, 532, 617
BpiI	GAAGAC	2 cut(s)	51, 104
BplI	GAGNNNNNCTC	6 cut(s)	191, 223, 316, 348, 392, 424
BpmI	CTGGAG	1 cut(s)	727
BpuMI	CCSGG	1 cut(s)	157
BsaJI	CCNNGG	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 710
Bse1I	ACTGG	2 cut(s)	582, 744
Bse3DI	GCAATG	1 cut(s)	498
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	1 cut(s)	74
BseLI	CCNNNNNNNGG	2 cut(s)	156, 710
BseMI	GCAATG	1 cut(s)	498
BseMII	CTCAG	2 cut(s)	267, 347
BseNI	ACTGG	2 cut(s)	582, 744
BseRI	GAGGAG	2 cut(s)	340, 446
BseXI	GCAGC	2 cut(s)	284, 539
Bsh1236I	CGCG	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	124
BsiSI	CCGG	2 cut(s)	157, 195
BslFI	GGGAC	3 cut(s)	176, 509, 714
BslI	CCNNNNNNNGG	2 cut(s)	156, 710
BsmFI	GGGAC	3 cut(s)	176, 509, 714
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp143I	GATC	3 cut(s)	111, 229, 451
BspACI	CCGC	9 cut(s)	27, 33, 39, 82, 172, 184, 222, 428, 732
BspCNI	CTCAG	2 cut(s)	268, 346
BspFNI	CGCG	1 cut(s)	82
BspLI	GGNNCC	2 cut(s)	164, 702
BspMAI	CTGCAG	1 cut(s)	274
BspMI	ACCTGC	2 cut(s)	586, 745
BspPI	GGATC	1 cut(s)	224
BsrBI	CCGCTC	3 cut(s)	33, 39, 186
BsrDI	GCAATG	1 cut(s)	498
BsrI	ACTGG	2 cut(s)	582, 744
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	3 cut(s)	111, 229, 451
BssT1I	CCWWGG	1 cut(s)	210
Bst4CI	ACNGT	4 cut(s)	103, 290, 520, 617
BstC8I	GCNNGC	2 cut(s)	172, 732
BstDEI	CTNAG	2 cut(s)	276, 333
BstF5I	GGATG	1 cut(s)	74
BstFNI	CGCG	1 cut(s)	82
BstH2I	RGCGCY	1 cut(s)	472
BstHHI	GCGC	2 cut(s)	82, 471
BstKTI	GATC	3 cut(s)	114, 232, 454
BstMBI	GATC	3 cut(s)	111, 229, 451
BstMWI	GCNNNNNNNGC	3 cut(s)	39, 346, 475
BstNSI	RCATGY	1 cut(s)	760
BstSCI	CCNGG	1 cut(s)	155
BstSFI	CTRYAG	1 cut(s)	270
BstUI	CGCG	1 cut(s)	82
BstV1I	GCAGC	2 cut(s)	284, 539
BstV2I	GAAGAC	2 cut(s)	51, 104
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BtrI	CACGTC	1 cut(s)	178
BtsCI	GGATG	1 cut(s)	74
BtsIMutI	CAGTG	1 cut(s)	525
BveI	ACCTGC	2 cut(s)	586, 745
Cac8I	GCNNGC	2 cut(s)	172, 732
CfoI	GCGC	2 cut(s)	82, 471
Cfr13I	GGNCC	5 cut(s)	163, 214, 463, 701, 713
Csp6I	GTAC	4 cut(s)	304, 436, 618, 747
CviAII	CATG	3 cut(s)	597, 660, 757
CviJI	RGCY	9 cut(s)	42, 122, 221, 275, 317, 340, 370, 408, 730
CviKI_1	RGCY	9 cut(s)	42, 122, 221, 275, 317, 340, 370, 408, 730
CviQI	GTAC	4 cut(s)	304, 436, 618, 747
DdeI	CTNAG	2 cut(s)	276, 333
DpnI	GATC	3 cut(s)	113, 231, 453
DpnII	GATC	3 cut(s)	111, 229, 451
DraI	TTTAAA	1 cut(s)	771
DriI	GACNNNNNGTC	2 cut(s)	52, 55
Eam1105I	GACNNNNNGTC	2 cut(s)	52, 55
Ecl136II	GAGCTC	1 cut(s)	122
Eco130I	CCWWGG	1 cut(s)	210
Eco24I	GRGCYC	1 cut(s)	124
Eco47I	GGWCC	5 cut(s)	163, 214, 463, 701, 713
Eco53kI	GAGCTC	1 cut(s)	122
Eco57I	CTGAAG	2 cut(s)	152, 501
EcoICRI	GAGCTC	1 cut(s)	122
EcoRI	GAATTC	1 cut(s)	722
EcoT14I	CCWWGG	1 cut(s)	210
EcoT38I	GRGCYC	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	3 cut(s)	600, 663, 760
FaqI	GGGAC	3 cut(s)	176, 509, 714
FatI	CATG	3 cut(s)	596, 659, 756
FauI	CCCGC	6 cut(s)	20, 26, 75, 179, 191, 739
Fnu4HI	GCNGC	4 cut(s)	40, 222, 273, 553
FokI	GGATG	1 cut(s)	81
FriOI	GRGCYC	1 cut(s)	124
Fsp4HI	GCNGC	4 cut(s)	40, 222, 273, 553
GlaI	GCGC	2 cut(s)	81, 470
GluI	GCNGC	4 cut(s)	40, 222, 273, 553
GsuI	CTGGAG	1 cut(s)	727
HaeII	RGCGCY	1 cut(s)	472
HapII	CCGG	2 cut(s)	157, 195
HhaI	GCGC	2 cut(s)	82, 471
Hin1II	CATG	3 cut(s)	600, 663, 760
Hin6I	GCGC	2 cut(s)	80, 469
HinP1I	GCGC	2 cut(s)	80, 469
HincII	GTYRAC	1 cut(s)	570
HindII	GTYRAC	1 cut(s)	570
HindIII	AAGCTT	1 cut(s)	315
HinfI	GANTC	3 cut(s)	17, 50, 328
HpaII	CCGG	2 cut(s)	157, 195
HphI	GGTGA	3 cut(s)	106, 172, 376
Hpy166II	GTNNAC	3 cut(s)	150, 286, 570
Hpy188I	TCNGA	5 cut(s)	16, 46, 254, 336, 625
Hpy188III	TCNNGA	3 cut(s)	63, 233, 796
Hpy8I	GTNNAC	3 cut(s)	150, 286, 570
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	3 cut(s)	557, 677, 704
HpyCH4III	ACNGT	4 cut(s)	103, 290, 520, 617
HpyCH4IV	ACGT	2 cut(s)	177, 532
HpyCH4V	TGCA	6 cut(s)	272, 416, 503, 523, 632, 826
HpyF10VI	GCNNNNNNNGC	3 cut(s)	39, 346, 475
HpyF3I	CTNAG	2 cut(s)	276, 333
HpySE526I	ACGT	2 cut(s)	177, 532
Hsp92II	CATG	3 cut(s)	600, 663, 760
HspAI	GCGC	2 cut(s)	80, 469
Kzo9I	GATC	3 cut(s)	111, 229, 451
LmnI	GCTCC	6 cut(s)	30, 36, 72, 119, 191, 605
Lsp1109I	GCAGC	2 cut(s)	284, 539
LweI	GCATC	3 cut(s)	415, 532, 617
MaeII	ACGT	2 cut(s)	177, 532
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	3 cut(s)	113, 231, 453
MbiI	CCGCTC	3 cut(s)	33, 39, 186
MboI	GATC	3 cut(s)	111, 229, 451
MboII	GAAGA	4 cut(s)	51, 109, 494, 756
MflI	RGATCY	1 cut(s)	229
MhlI	GDGCHC	1 cut(s)	124
MluCI	AATT	6 cut(s)	417, 442, 592, 633, 722, 772
MlyI	GAGTC	3 cut(s)	26, 44, 337
MnlI	CCTC	8 cut(s)	59, 200, 318, 342, 394, 424, 751, 802
MseI	TTAA	3 cut(s)	528, 639, 770
MslI	CAYNNNNRTG	1 cut(s)	254
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	2 cut(s)	157, 195
MspR9I	CCNGG	1 cut(s)	157
MvnI	CGCG	1 cut(s)	82
MwoI	GCNNNNNNNGC	3 cut(s)	39, 346, 475
NciI	CCSGG	1 cut(s)	157
NdeII	GATC	3 cut(s)	111, 229, 451
NlaIII	CATG	3 cut(s)	600, 663, 760
NlaIV	GGNNCC	2 cut(s)	164, 702
NmuCI	GTSAC	1 cut(s)	178
NspI	RCATGY	1 cut(s)	760
PaqCI	CACCTGC	2 cut(s)	586, 745
PciI	ACATGT	1 cut(s)	756
PcsI	WCGNNNNNNNCGW	3 cut(s)	50, 174, 538
PflFI	GACNNNGTC	1 cut(s)	145
PkrI	GCNGC	4 cut(s)	41, 223, 274, 554
PleI	GAGTC	3 cut(s)	25, 44, 336
PpsI	GAGTC	3 cut(s)	25, 44, 336
PscI	ACATGT	1 cut(s)	756
Psp124BI	GAGCTC	1 cut(s)	124
Psp1406I	AACGTT	1 cut(s)	532
PspN4I	GGNNCC	2 cut(s)	164, 702
PspPI	GGNCC	5 cut(s)	163, 214, 463, 701, 713
PstI	CTGCAG	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	229
PsyI	GACNNNGTC	1 cut(s)	145
PvuII	CAGCTG	1 cut(s)	275
RsaI	GTAC	4 cut(s)	305, 437, 619, 748
RsaNI	GTAC	4 cut(s)	304, 436, 618, 747
RseI	CAYNNNNRTG	1 cut(s)	254
SacI	GAGCTC	1 cut(s)	124
SaqAI	TTAA	3 cut(s)	528, 639, 770
SatI	GCNGC	4 cut(s)	40, 222, 273, 553
Sau3AI	GATC	3 cut(s)	111, 229, 451
Sau96I	GGNCC	5 cut(s)	163, 214, 463, 701, 713
SchI	GAGTC	3 cut(s)	26, 44, 337
ScrFI	CCNGG	1 cut(s)	157
SduI	GDGCHC	1 cut(s)	124
SfaNI	GCATC	3 cut(s)	415, 532, 617
SfcI	CTRYAG	1 cut(s)	270
SinI	GGWCC	5 cut(s)	163, 214, 463, 701, 713
SmiMI	CAYNNNNRTG	1 cut(s)	254
Sse9I	AATT	6 cut(s)	417, 442, 592, 633, 722, 772
SsiI	CCGC	9 cut(s)	27, 33, 39, 82, 172, 184, 222, 428, 732
SstI	GAGCTC	1 cut(s)	124
StyD4I	CCNGG	1 cut(s)	155
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	4 cut(s)	103, 290, 520, 617
TaiI	ACGT	2 cut(s)	180, 535
TaqI	TCGA	1 cut(s)	795
TasI	AATT	6 cut(s)	417, 442, 592, 633, 722, 772
TatI	WGTACW	3 cut(s)	303, 435, 617
TauI	GCSGC	2 cut(s)	42, 224
Tru1I	TTAA	3 cut(s)	528, 639, 770
Tru9I	TTAA	3 cut(s)	528, 639, 770
TscAI	CASTG	1 cut(s)	525
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	2 cut(s)	272, 552
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	6 cut(s)	576, 585, 648, 696, 735, 804
TspGWI	ACGGA	1 cut(s)	705
TspRI	CASTG	1 cut(s)	525
Tth111I	GACNNNGTC	1 cut(s)	145
VpaK11BI	GGWCC	5 cut(s)	163, 214, 463, 701, 713
XapI	RAATTY	3 cut(s)	442, 722, 772
XceI	RCATGY	1 cut(s)	760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.