MD06G1129000.v1.1

Chromophore lyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0012201
Physical Location & Seq
Forward (+)
27268313 .. 27270816
2504 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1129000.v1.1.491

Sequence Viewer

Length: 816 bp
ATGGTAATCGGGTCGGAGCCGGGCGGTGGGAGCTCCGATTCCGCCGGAGGATGGGGCGTGGCGCGCGGGTTGGTGGTTAAGACGCTGGTGCTGATAGGCGGAGCTCTACTGCTGAAGCGACTCACCAAGTCCACCACCCGGTGGGACCACGCCCGCCTGGTTACCCGTTCTCTTTCCGGCGAGAAGTTCTCCAAAGACCAAGCGGCCAGAGATCCTGACCACTACTTCAACATTAGAATGGTAACTTGCCCAGCTGCTGAAATGGTGGATGGTTCTAAGGTTTTGTACTTTGAACAAGCTTTTTGGAGGACTCCTCAGAAGCCGTTTCGACAAAGATTTTATATGGTGAAGCCTTGCCCGAAAGAGTTGAAATGTGATGTTGAGCTAAGCTCATACGCAATCAGAGACGTGGAGGAGTACAAGAATTTCTGTGATCGCTCAAAGGATCAGCGACCGCTTCCTGAAGAAGTTATTGGGGACATTGCAGAGCATTTGACAACAATACATCTGAAACGTTGTGAGCGTGGGAAACGCTGCTTATATGAAGGTTCAACTCCGCCTGACAGCTTTCCAAATTCATGGAATGGAGCAGCGTACTGTACATCGGAACTTGCAATTCATAAAAATAATGAGATACATGCCTGGGATCGGGGATTTGATGCTGATGGAAATCAGGTTTGGGGTCCTAAGGAAGGTCCGTACGAATTCAAGCCTGTGCCGGCCTCTAGTACCAATGACATGTTTTCTTCTTTAAATTTTCCTATCCAGCAGTCTATGGAGAAAAGAATAGAGGGTTCATTTGTCTTGCAAGAATAA

Protein Analysis

272

Amino Acids

30.58

Weight (kDa)

7.0

Isoelectric Point (pI)

49.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CpeT PF06206 55 - 237 6.5e-45 CpeT/CpcT family (DUF1001)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51020
fragaria_vesca FvH4_5g09710 FvH4_5g09710
malus_domestica MD06G1129000.v1.1 MD14G1145900.v1.1
prunus_persica Prupe.5G140300_v2.0.a1
pyrus_communis pycom06g12070 pycom14g12090
rosa_chinensis RchiOBHm_Chr7g0188531
rosa_laevigata RLG00000004686
rosa_multiflora Rmu_sc0001576.1_g000009 Rmu_sc0016427.1_g000007
rosa_roxburghii Rroxscaffold_3G00266330
rosa_rugosa Rorug06G0491000
rosa_samantha Rh7AG095900 Rh7BG097700 Rh7CG098500 Rh7DG097800
rosa_wichuraiana Rw7G008280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 141
AccII CGCG 2 cut(s) 64, 66
AciI CCGC 8 cut(s) 24, 42, 66, 99, 154, 203, 455, 557
AclI AACGTT 1 cut(s) 514
AclWI GGATC 3 cut(s) 206, 453, 654
AcoI YGGCCR 1 cut(s) 204
AcsI RAATTY 4 cut(s) 424, 574, 704, 754
AcuI CTGAAG 2 cut(s) 134, 483
AdeI CACNNNGTG 1 cut(s) 141
AfaI GTAC 6 cut(s) 287, 419, 596, 601, 701, 730
AfiI CCNNNNNNNGG 6 cut(s) 26, 51, 138, 141, 648, 692
AflIII ACRYGT 1 cut(s) 738
AgsI TTSAA 5 cut(s) 229, 293, 370, 552, 709
AjiI CACGTC 1 cut(s) 409
AjnI CCWGG 2 cut(s) 156, 641
AjuI GAANNNNNNNTTGG 4 cut(s) 456, 488, 661, 693
AluBI AGCT 7 cut(s) 33, 104, 254, 299, 385, 390, 567
AluI AGCT 7 cut(s) 33, 104, 254, 299, 385, 390, 567
Alw21I GWGCWC 2 cut(s) 35, 106
Alw26I GTCTC 1 cut(s) 399
AlwI GGATC 3 cut(s) 206, 453, 654
AlwNI CAGNNNCTG 1 cut(s) 257
AoxI GGCC 2 cut(s) 204, 720
ApeKI GCWGC 3 cut(s) 254, 534, 590
ApoI RAATTY 4 cut(s) 424, 574, 704, 754
AspLEI GCGC 2 cut(s) 64, 66
AspS9I GGNCC 3 cut(s) 145, 683, 695
AsuC2I CCSGG 2 cut(s) 21, 139
AsuHPI GGTGA 2 cut(s) 115, 358
AvaII GGWCC 3 cut(s) 145, 683, 695
AxyI CCTNAGG 1 cut(s) 687
BanII GRGCYC 2 cut(s) 35, 106
Bbv12I GWGCWC 2 cut(s) 35, 106
BbvI GCAGC 3 cut(s) 241, 521, 602
BccI CCATC 3 cut(s) 45, 263, 659
BceAI ACGGC 1 cut(s) 307
BciT130I CCWGG 2 cut(s) 158, 643
BcnI CCSGG 2 cut(s) 21, 139
BcoDI GTCTC 1 cut(s) 399
BfaI CTAG 1 cut(s) 726
BisI GCNGC 4 cut(s) 204, 255, 535, 591
BlpI GCTNAGC 1 cut(s) 386
BlsI GCNGC 4 cut(s) 205, 256, 536, 592
Bme1390I CCNGG 4 cut(s) 21, 139, 158, 643
Bme18I GGWCC 3 cut(s) 145, 683, 695
BmgBI CACGTC 1 cut(s) 409
BmgT120I GGNCC 3 cut(s) 145, 683, 695
BmiI GGNNCC 3 cut(s) 18, 146, 684
BmrFI CCNGG 4 cut(s) 21, 139, 158, 643
BmsI GCATC 1 cut(s) 649
BplI GAGNNNNNCTC 6 cut(s) 173, 205, 298, 330, 374, 406
Bpu1102I GCTNAGC 1 cut(s) 386
BpuMI CCSGG 2 cut(s) 21, 139
BsaBI GATNNNNATC 1 cut(s) 669
BsaJI CCNNGG 1 cut(s) 642
Bsc4I CCNNNNNNNGG 6 cut(s) 26, 51, 138, 141, 648, 692
Bse118I RCCGGY 1 cut(s) 718
Bse21I CCTNAGG 1 cut(s) 687
Bse3DI GCAATG 1 cut(s) 480
Bse8I GATNNNNATC 1 cut(s) 669
BseBI CCWGG 2 cut(s) 158, 643
BseDI CCNNGG 1 cut(s) 642
BseGI GGATG 2 cut(s) 56, 274
BseJI GATNNNNATC 1 cut(s) 669
BseLI CCNNNNNNNGG 6 cut(s) 26, 51, 138, 141, 648, 692
BseMI GCAATG 1 cut(s) 480
BseMII CTCAG 1 cut(s) 329
BsePI GCGCGC 1 cut(s) 62
BseRI GAGGAG 2 cut(s) 303, 428
BseXI GCAGC 3 cut(s) 241, 521, 602
BseYI CCCAGC 1 cut(s) 250
Bsh1236I CGCG 2 cut(s) 64, 66
Bsh1285I CGRYCG 1 cut(s) 455
BshFI GGCC 2 cut(s) 206, 722
BsiEI CGRYCG 1 cut(s) 455
BsiHKAI GWGCWC 2 cut(s) 35, 106
BsiSI CCGG 5 cut(s) 20, 45, 139, 177, 719
BsiWI CGTACG 1 cut(s) 699
BslFI GGGAC 2 cut(s) 158, 491
BslI CCNNNNNNNGG 6 cut(s) 26, 51, 138, 141, 648, 692
BsmAI GTCTC 1 cut(s) 399
BsmBI CGTCTC 1 cut(s) 399
BsmFI GGGAC 2 cut(s) 158, 491
BsnI GGCC 2 cut(s) 206, 722
Bsp1286I GDGCHC 2 cut(s) 35, 106
Bsp1407I TGTACA 1 cut(s) 599
Bsp143I GATC 4 cut(s) 211, 433, 445, 646
Bsp1720I GCTNAGC 1 cut(s) 386
BspACI CCGC 8 cut(s) 24, 42, 66, 99, 154, 203, 455, 557
BspANI GGCC 2 cut(s) 206, 722
BspCNI CTCAG 1 cut(s) 328
BspFNI CGCG 2 cut(s) 64, 66
BspLI GGNNCC 3 cut(s) 18, 146, 684
BspPI GGATC 3 cut(s) 206, 453, 654
BsrDI GCAATG 1 cut(s) 480
BsrFI RCCGGY 1 cut(s) 718
BsrGI TGTACA 1 cut(s) 599
BssAI RCCGGY 1 cut(s) 718
BssECI CCNNGG 1 cut(s) 642
BssHII GCGCGC 1 cut(s) 62
BssMI GATC 4 cut(s) 211, 433, 445, 646
Bst2UI CCWGG 2 cut(s) 158, 643
Bst4CI ACNGT 1 cut(s) 599
BstAUI TGTACA 1 cut(s) 599
BstC8I GCNNGC 3 cut(s) 64, 154, 720
BstDEI CTNAG 4 cut(s) 276, 315, 386, 687
BstEII GGTNACC 1 cut(s) 160
BstENI CCTNNNNNAGG 1 cut(s) 690
BstF5I GGATG 2 cut(s) 56, 274
BstFNI CGCG 2 cut(s) 64, 66
BstHHI GCGC 2 cut(s) 64, 66
BstKTI GATC 4 cut(s) 214, 436, 448, 649
BstMAI GTCTC 1 cut(s) 399
BstMBI GATC 4 cut(s) 211, 433, 445, 646
BstMCI CGRYCG 1 cut(s) 455
BstMWI GCNNNNNNNGC 2 cut(s) 30, 63
BstNI CCWGG 2 cut(s) 158, 643
BstNSI RCATGY 2 cut(s) 641, 742
BstPI GGTNACC 1 cut(s) 160
BstSCI CCNGG 4 cut(s) 19, 137, 156, 641
BstUI CGCG 2 cut(s) 64, 66
BstV1I GCAGC 3 cut(s) 241, 521, 602
BstX2I RGATCY 1 cut(s) 211
BstXI CCANNNNNNTGG 1 cut(s) 579
BstYI RGATCY 1 cut(s) 211
Bsu36I CCTNAGG 1 cut(s) 687
BsuRI GGCC 2 cut(s) 206, 722
BtrI CACGTC 1 cut(s) 409
BtsCI GGATG 2 cut(s) 56, 274
Cac8I GCNNGC 3 cut(s) 64, 154, 720
CaiI CAGNNNCTG 1 cut(s) 257
CfoI GCGC 2 cut(s) 64, 66
Cfr10I RCCGGY 1 cut(s) 718
Cfr13I GGNCC 3 cut(s) 145, 683, 695
CseI GACGC 1 cut(s) 91
Csp6I GTAC 6 cut(s) 286, 418, 595, 600, 700, 729
CviAII CATG 3 cut(s) 579, 638, 739
CviQI GTAC 6 cut(s) 286, 418, 595, 600, 700, 729
DdeI CTNAG 4 cut(s) 276, 315, 386, 687
DpnI GATC 4 cut(s) 213, 435, 447, 648
DpnII GATC 4 cut(s) 211, 433, 445, 646
DraI TTTAAA 1 cut(s) 753
DraIII CACNNNGTG 1 cut(s) 141
EaeI YGGCCR 1 cut(s) 204
EciI GGCGGA 3 cut(s) 31, 114, 546
Ecl136II GAGCTC 2 cut(s) 33, 104
Eco24I GRGCYC 2 cut(s) 35, 106
Eco47I GGWCC 3 cut(s) 145, 683, 695
Eco53kI GAGCTC 2 cut(s) 33, 104
Eco57I CTGAAG 2 cut(s) 134, 483
Eco81I CCTNAGG 1 cut(s) 687
Eco91I GGTNACC 1 cut(s) 160
EcoICRI GAGCTC 2 cut(s) 33, 104
EcoNI CCTNNNNNAGG 1 cut(s) 690
EcoO109I RGGNCCY 1 cut(s) 683
EcoO65I GGTNACC 1 cut(s) 160
EcoRI GAATTC 1 cut(s) 704
EcoRII CCWGG 2 cut(s) 156, 641
EcoT38I GRGCYC 2 cut(s) 35, 106
Esp3I CGTCTC 1 cut(s) 399
FaeI CATG 3 cut(s) 582, 641, 742
FaqI GGGAC 2 cut(s) 158, 491
FatI CATG 3 cut(s) 578, 637, 738
FauI CCCGC 2 cut(s) 59, 161
Fnu4HI GCNGC 4 cut(s) 204, 255, 535, 591
FokI GGATG 2 cut(s) 63, 281
FriOI GRGCYC 2 cut(s) 35, 106
Fsp4HI GCNGC 4 cut(s) 204, 255, 535, 591
FspBI CTAG 1 cut(s) 726
GlaI GCGC 2 cut(s) 63, 65
GluI GCNGC 4 cut(s) 204, 255, 535, 591
GsaI CCCAGC 1 cut(s) 254
HaeIII GGCC 2 cut(s) 206, 722
HapII CCGG 5 cut(s) 20, 45, 139, 177, 719
HgaI GACGC 1 cut(s) 91
HhaI GCGC 2 cut(s) 64, 66
Hin1II CATG 3 cut(s) 582, 641, 742
Hin6I GCGC 2 cut(s) 62, 64
HinP1I GCGC 2 cut(s) 62, 64
HindIII AAGCTT 1 cut(s) 297
HinfI GANTC 3 cut(s) 38, 120, 310
HpaII CCGG 5 cut(s) 20, 45, 139, 177, 719
HphI GGTGA 2 cut(s) 115, 358
Hpy166II GTNNAC 1 cut(s) 132
Hpy188I TCNGA 6 cut(s) 16, 37, 318, 404, 510, 607
Hpy188III TCNNGA 2 cut(s) 215, 461
Hpy8I GTNNAC 1 cut(s) 132
HpyAV CCTTC 2 cut(s) 539, 686
HpyCH4III ACNGT 1 cut(s) 599
HpyCH4IV ACGT 2 cut(s) 408, 514
HpyCH4V TGCA 3 cut(s) 485, 614, 808
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 63
HpyF3I CTNAG 4 cut(s) 276, 315, 386, 687
HpySE526I ACGT 2 cut(s) 408, 514
Hsp92II CATG 3 cut(s) 582, 641, 742
HspAI GCGC 2 cut(s) 62, 64
KroI GCCGGC 1 cut(s) 718
KroNI GCCGGC 1 cut(s) 720
Kzo9I GATC 4 cut(s) 211, 433, 445, 646
LmnI GCTCC 5 cut(s) 16, 30, 38, 101, 587
Lsp1109I GCAGC 3 cut(s) 241, 521, 602
LweI GCATC 1 cut(s) 649
MaeI CTAG 1 cut(s) 726
MaeII ACGT 2 cut(s) 408, 514
MaeIII GTNAC 2 cut(s) 160, 241
MalI GATC 4 cut(s) 213, 435, 447, 648
MboI GATC 4 cut(s) 211, 433, 445, 646
MboII GAAGA 2 cut(s) 476, 738
MflI RGATCY 1 cut(s) 211
MhlI GDGCHC 2 cut(s) 35, 106
MluCI AATT 5 cut(s) 424, 574, 615, 704, 754
MlyI GAGTC 2 cut(s) 114, 304
MnlI CCTC 6 cut(s) 41, 300, 324, 406, 733, 784
MroNI GCCGGC 1 cut(s) 718
MseI TTAA 2 cut(s) 78, 752
MslI CAYNNNNRTG 1 cut(s) 236
MspA1I CMGCKG 1 cut(s) 254
MspI CCGG 5 cut(s) 20, 45, 139, 177, 719
MspR9I CCNGG 4 cut(s) 21, 139, 158, 643
MvaI CCWGG 2 cut(s) 158, 643
MvnI CGCG 2 cut(s) 64, 66
MwoI GCNNNNNNNGC 2 cut(s) 30, 63
NaeI GCCGGC 1 cut(s) 720
NciI CCSGG 2 cut(s) 21, 139
NdeII GATC 4 cut(s) 211, 433, 445, 646
NgoMIV GCCGGC 1 cut(s) 718
NlaIII CATG 3 cut(s) 582, 641, 742
NlaIV GGNNCC 3 cut(s) 18, 146, 684
NspI RCATGY 2 cut(s) 641, 742
PauI GCGCGC 1 cut(s) 62
PciI ACATGT 1 cut(s) 738
PcsI WCGNNNNNNNCGW 1 cut(s) 520
PdiI GCCGGC 1 cut(s) 720
PfeI GAWTC 1 cut(s) 38
Pfl23II CGTACG 1 cut(s) 699
PflMI CCANNNNNTGG 1 cut(s) 141
PkrI GCNGC 4 cut(s) 205, 256, 536, 592
PleI GAGTC 2 cut(s) 114, 304
PpsI GAGTC 2 cut(s) 114, 304
PpuMI RGGWCCY 1 cut(s) 683
PscI ACATGT 1 cut(s) 738
Psp124BI GAGCTC 2 cut(s) 35, 106
Psp1406I AACGTT 1 cut(s) 514
Psp5II RGGWCCY 1 cut(s) 683
Psp6I CCWGG 2 cut(s) 156, 641
PspEI GGTNACC 1 cut(s) 160
PspFI CCCAGC 1 cut(s) 250
PspGI CCWGG 2 cut(s) 156, 641
PspLI CGTACG 1 cut(s) 699
PspN4I GGNNCC 3 cut(s) 18, 146, 684
PspPI GGNCC 3 cut(s) 145, 683, 695
PspPPI RGGWCCY 1 cut(s) 683
PstNI CAGNNNCTG 1 cut(s) 257
PsuI RGATCY 1 cut(s) 211
PteI GCGCGC 1 cut(s) 62
PvuII CAGCTG 1 cut(s) 254
RsaI GTAC 6 cut(s) 287, 419, 596, 601, 701, 730
RsaNI GTAC 6 cut(s) 286, 418, 595, 600, 700, 729
RseI CAYNNNNRTG 1 cut(s) 236
SacI GAGCTC 2 cut(s) 35, 106
SaqAI TTAA 2 cut(s) 78, 752
SatI GCNGC 4 cut(s) 204, 255, 535, 591
Sau3AI GATC 4 cut(s) 211, 433, 445, 646
Sau96I GGNCC 3 cut(s) 145, 683, 695
SchI GAGTC 2 cut(s) 114, 304
ScrFI CCNGG 4 cut(s) 21, 139, 158, 643
SduI GDGCHC 2 cut(s) 35, 106
SfaNI GCATC 1 cut(s) 649
SinI GGWCC 3 cut(s) 145, 683, 695
SmiMI CAYNNNNRTG 1 cut(s) 236
Sse9I AATT 5 cut(s) 424, 574, 615, 704, 754
SsiI CCGC 8 cut(s) 24, 42, 66, 99, 154, 203, 455, 557
SspMI CTAG 1 cut(s) 726
SstI GAGCTC 2 cut(s) 35, 106
StyD4I CCNGG 4 cut(s) 19, 137, 156, 641
TaaI ACNGT 1 cut(s) 599
TaiI ACGT 2 cut(s) 411, 517
TaqI TCGA 1 cut(s) 328
TasI AATT 5 cut(s) 424, 574, 615, 704, 754
TatI WGTACW 3 cut(s) 285, 417, 599
TauI GCSGC 1 cut(s) 206
TfiI GAWTC 1 cut(s) 38
Tru1I TTAA 2 cut(s) 78, 752
Tru9I TTAA 2 cut(s) 78, 752
TseI GCWGC 3 cut(s) 254, 534, 590
TspDTI ATGAA 4 cut(s) 558, 567, 608, 786
TspGWI ACGGA 1 cut(s) 687
Van91I CCANNNNNTGG 1 cut(s) 141
VpaK11BI GGWCC 3 cut(s) 145, 683, 695
XagI CCTNNNNNAGG 1 cut(s) 690
XapI RAATTY 4 cut(s) 424, 574, 704, 754
XceI RCATGY 2 cut(s) 641, 742
XspI CTAG 1 cut(s) 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.