Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0012201

Physical Location & Seq

Genomic Coordinates Forward (+)

23884604 .. 23887051

Gene Structure 2448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1145900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGTAATCGGGTCGGAGCCGGGTAGCGGCAGCTCCGATTCCGCAGGAGGATGGAGCGTGGCTCGCGGGCTGCTGGTGAAGACGCTGGTGATGATAGGCGGAGCTCTGCTGCTGAAGCGGCTCACCAAGTCCACCACCCGGTGGGACCACGCCCGCCTCGTTTCCCGTTCTCTCTCCGGCGAGAAGTTTTCCAAAGACCAAGCGGCCAGAGATCCTGACCACTACTTCAACATCAGAATGGTAACTTGCCCAGCAGCTGAAATGGTAGATGGTTCTAATGTTTTGTACTTTGAGCAAGCTTTTTGGAGGACTCCTCAGAAGCCGTTTCGACAAAGATTTTATATGGTGAAGCCTTGCCCGAAAGAATTGAAATGTGATGTTGAGCTAAGCTCATATGCAATCAGAGATGCGGAGGAGTACAAGAATTTCTGTGATCGCTCAAAGGACCAGCGACCACTTCCTGAAGAAGTTATCGGGGACATTGCAGAGCATTTGACAACAATACATCTGAAACGTTGTGAGCGTGGGAAACGCTGCTTATATGAAGGTTCAACTCCGCCTGACAGCTTTCCTAATTTATGGAATGGAGCAGCGTACTGTACTTCGGAACTTGCAATTCATAAAAATAATGAGATCCATGCCTGGGATAGGGGATTTGATGGTGATGGAAATCAGGTTTGGGGTCCAAAGGAAGGTCCGTACGAATTCAAGCCTGCCCCGGCCTCTAGTACCAACGACATGTTCTCTTCTTTAAATTTTCCCATTCAGCAGTCTATGGAGAAAAGAATAGAGGGTTCTTTTGTTTTACAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0006979 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009607 GO:0009615 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0010020 GO:0016020 GO:0016032 GO:0016043 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0040011 GO:0042170 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044000 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044766 GO:0046739 GO:0046741 GO:0046794 GO:0048285 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051302 GO:0051701 GO:0051704 GO:0051707 GO:0051814 GO:0052126 GO:0052192 GO:0065007 GO:0071840 GO:0098586 GO:0098588 GO:0098805 GO:1901700 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CpeT

Protein Analysis

272

Amino Acids

30.6

Weight (kDa)

6.61

Isoelectric Point (pI)

51.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CpeT	PF06206	55 - 237	1.8e-44	CpeT/CpcT family (DUF1001)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51020
fragaria_vesca	FvH4_5g09710 FvH4_5g09710
malus_domestica	MD06G1129000.v1.1 MD14G1145900.v1.1
prunus_persica	Prupe.5G140300_v2.0.a1
pyrus_communis	pycom06g12070 pycom14g12090
rosa_chinensis	RchiOBHm_Chr7g0188531
rosa_laevigata	RLG00000004686
rosa_multiflora	Rmu_sc0001576.1_g000009 Rmu_sc0016427.1_g000007
rosa_roxburghii	Rroxscaffold_3G00266330
rosa_rugosa	Rorug06G0491000
rosa_samantha	Rh7AG095900 Rh7BG097700 Rh7CG098500 Rh7DG097800
rosa_wichuraiana	Rw7G008280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	141
AccII	CGCG	1 cut(s)	66
AciI	CCGC	9 cut(s)	27, 42, 66, 99, 118, 154, 203, 410, 557
AclI	AACGTT	1 cut(s)	514
AclWI	GGATC	2 cut(s)	206, 628
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	3 cut(s)	424, 704, 754
AcuI	CTGAAG	2 cut(s)	134, 483
AdeI	CACNNNGTG	1 cut(s)	141
AfaI	GTAC	6 cut(s)	287, 419, 596, 601, 701, 730
AfiI	CCNNNNNNNGG	6 cut(s)	26, 138, 141, 643, 648, 692
AflIII	ACRYGT	1 cut(s)	738
AgsI	TTSAA	4 cut(s)	229, 370, 552, 709
AjnI	CCWGG	1 cut(s)	641
AjuI	GAANNNNNNNTTGG	4 cut(s)	661, 693, 725, 757
AluBI	AGCT	7 cut(s)	33, 104, 257, 299, 385, 390, 567
AluI	AGCT	7 cut(s)	33, 104, 257, 299, 385, 390, 567
Alw21I	GWGCWC	1 cut(s)	106
AlwI	GGATC	2 cut(s)	206, 628
AlwNI	CAGNNNCTG	1 cut(s)	257
AoxI	GGCC	2 cut(s)	204, 720
ApeKI	GCWGC	6 cut(s)	30, 70, 109, 254, 534, 590
ApoI	RAATTY	3 cut(s)	424, 704, 754
AspS9I	GGNCC	4 cut(s)	145, 445, 683, 695
AsuC2I	CCSGG	3 cut(s)	21, 139, 719
AsuHPI	GGTGA	5 cut(s)	88, 100, 115, 358, 674
AvaII	GGWCC	4 cut(s)	145, 445, 683, 695
BanII	GRGCYC	1 cut(s)	106
BbsI	GAAGAC	1 cut(s)	86
Bbv12I	GWGCWC	1 cut(s)	106
BbvI	GCAGC	6 cut(s)	42, 57, 96, 266, 521, 602
BccI	CCATC	4 cut(s)	45, 263, 653, 659
BceAI	ACGGC	1 cut(s)	307
BciT130I	CCWGG	1 cut(s)	643
BcnI	CCSGG	3 cut(s)	21, 139, 719
BfaI	CTAG	1 cut(s)	726
BisI	GCNGC	9 cut(s)	28, 31, 71, 110, 119, 204, 255, 535, 591
BlpI	GCTNAGC	1 cut(s)	386
BlsI	GCNGC	9 cut(s)	29, 32, 72, 111, 120, 205, 256, 536, 592
Bme1390I	CCNGG	4 cut(s)	21, 139, 643, 719
Bme18I	GGWCC	4 cut(s)	145, 445, 683, 695
BmgT120I	GGNCC	4 cut(s)	145, 445, 683, 695
BmiI	GGNNCC	3 cut(s)	18, 146, 684
BmrFI	CCNGG	4 cut(s)	21, 139, 643, 719
BmsI	GCATC	1 cut(s)	397
BpiI	GAAGAC	1 cut(s)	86
BplI	GAGNNNNNCTC	6 cut(s)	46, 78, 298, 330, 374, 406
Bpu1102I	GCTNAGC	1 cut(s)	386
BpuMI	CCSGG	3 cut(s)	21, 139, 719
BsaBI	GATNNNNATC	1 cut(s)	669
BsaJI	CCNNGG	2 cut(s)	642, 717
Bsc4I	CCNNNNNNNGG	6 cut(s)	26, 138, 141, 643, 648, 692
Bse3DI	GCAATG	1 cut(s)	480
Bse8I	GATNNNNATC	1 cut(s)	669
BseBI	CCWGG	1 cut(s)	643
BseDI	CCNNGG	2 cut(s)	642, 717
BseGI	GGATG	1 cut(s)	56
BseJI	GATNNNNATC	1 cut(s)	669
BseLI	CCNNNNNNNGG	6 cut(s)	26, 138, 141, 643, 648, 692
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	1 cut(s)	329
BseRI	GAGGAG	2 cut(s)	303, 428
BseXI	GCAGC	6 cut(s)	42, 57, 96, 266, 521, 602
BseYI	CCCAGC	1 cut(s)	250
Bsh1236I	CGCG	1 cut(s)	66
BshFI	GGCC	2 cut(s)	206, 722
BsiHKAI	GWGCWC	1 cut(s)	106
BsiSI	CCGG	4 cut(s)	20, 139, 177, 719
BsiWI	CGTACG	1 cut(s)	699
BslFI	GGGAC	2 cut(s)	158, 491
BslI	CCNNNNNNNGG	6 cut(s)	26, 138, 141, 643, 648, 692
BsmFI	GGGAC	2 cut(s)	158, 491
BsnI	GGCC	2 cut(s)	206, 722
Bsp1286I	GDGCHC	1 cut(s)	106
Bsp143I	GATC	3 cut(s)	211, 433, 633
Bsp1720I	GCTNAGC	1 cut(s)	386
BspACI	CCGC	9 cut(s)	27, 42, 66, 99, 118, 154, 203, 410, 557
BspANI	GGCC	2 cut(s)	206, 722
BspCNI	CTCAG	1 cut(s)	328
BspFNI	CGCG	1 cut(s)	66
BspLI	GGNNCC	3 cut(s)	18, 146, 684
BspPI	GGATC	2 cut(s)	206, 628
BsrDI	GCAATG	1 cut(s)	480
BssECI	CCNNGG	2 cut(s)	642, 717
BssMI	GATC	3 cut(s)	211, 433, 633
Bst2UI	CCWGG	1 cut(s)	643
Bst4CI	ACNGT	1 cut(s)	599
Bst6I	CTCTTC	1 cut(s)	751
BstC8I	GCNNGC	5 cut(s)	64, 68, 154, 297, 714
BstDEI	CTNAG	2 cut(s)	315, 386
BstENI	CCTNNNNNAGG	1 cut(s)	646
BstF5I	GGATG	1 cut(s)	56
BstFNI	CGCG	1 cut(s)	66
BstKTI	GATC	3 cut(s)	214, 436, 636
BstMBI	GATC	3 cut(s)	211, 433, 633
BstMWI	GCNNNNNNNGC	3 cut(s)	63, 115, 118
BstNI	CCWGG	1 cut(s)	643
BstNSI	RCATGY	1 cut(s)	742
BstSCI	CCNGG	4 cut(s)	19, 137, 641, 717
BstUI	CGCG	1 cut(s)	66
BstV1I	GCAGC	6 cut(s)	42, 57, 96, 266, 521, 602
BstV2I	GAAGAC	1 cut(s)	86
BstX2I	RGATCY	2 cut(s)	211, 633
BstYI	RGATCY	2 cut(s)	211, 633
BsuRI	GGCC	2 cut(s)	206, 722
BtsCI	GGATG	1 cut(s)	56
Cac8I	GCNNGC	5 cut(s)	64, 68, 154, 297, 714
CaiI	CAGNNNCTG	1 cut(s)	257
Cfr13I	GGNCC	4 cut(s)	145, 445, 683, 695
CseI	GACGC	1 cut(s)	91
Csp6I	GTAC	6 cut(s)	286, 418, 595, 600, 700, 729
CviAII	CATG	2 cut(s)	638, 739
CviQI	GTAC	6 cut(s)	286, 418, 595, 600, 700, 729
DdeI	CTNAG	2 cut(s)	315, 386
DpnI	GATC	3 cut(s)	213, 435, 635
DpnII	GATC	3 cut(s)	211, 433, 633
DraI	TTTAAA	1 cut(s)	753
DraIII	CACNNNGTG	1 cut(s)	141
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	1 cut(s)	751
EarI	CTCTTC	1 cut(s)	751
EciI	GGCGGA	2 cut(s)	114, 546
Ecl136II	GAGCTC	1 cut(s)	104
Eco24I	GRGCYC	1 cut(s)	106
Eco47I	GGWCC	4 cut(s)	145, 445, 683, 695
Eco53kI	GAGCTC	1 cut(s)	104
Eco57I	CTGAAG	2 cut(s)	134, 483
EcoICRI	GAGCTC	1 cut(s)	104
EcoNI	CCTNNNNNAGG	1 cut(s)	646
EcoRI	GAATTC	1 cut(s)	704
EcoRII	CCWGG	1 cut(s)	641
EcoT38I	GRGCYC	1 cut(s)	106
FaeI	CATG	2 cut(s)	641, 742
FaqI	GGGAC	2 cut(s)	158, 491
FatI	CATG	2 cut(s)	637, 738
FauI	CCCGC	2 cut(s)	59, 161
FauNDI	CATATG	1 cut(s)	394
Fnu4HI	GCNGC	9 cut(s)	28, 31, 71, 110, 119, 204, 255, 535, 591
FokI	GGATG	1 cut(s)	63
FriOI	GRGCYC	1 cut(s)	106
Fsp4HI	GCNGC	9 cut(s)	28, 31, 71, 110, 119, 204, 255, 535, 591
FspBI	CTAG	1 cut(s)	726
GluI	GCNGC	9 cut(s)	28, 31, 71, 110, 119, 204, 255, 535, 591
GsaI	CCCAGC	1 cut(s)	254
HaeIII	GGCC	2 cut(s)	206, 722
HapII	CCGG	4 cut(s)	20, 139, 177, 719
HgaI	GACGC	1 cut(s)	91
Hin1II	CATG	2 cut(s)	641, 742
HindIII	AAGCTT	1 cut(s)	297
HinfI	GANTC	2 cut(s)	38, 310
HpaII	CCGG	4 cut(s)	20, 139, 177, 719
HphI	GGTGA	5 cut(s)	88, 100, 115, 358, 674
Hpy166II	GTNNAC	1 cut(s)	132
Hpy188I	TCNGA	7 cut(s)	16, 37, 236, 318, 404, 510, 607
Hpy188III	TCNNGA	2 cut(s)	215, 461
Hpy8I	GTNNAC	1 cut(s)	132
HpyAV	CCTTC	2 cut(s)	539, 686
HpyCH4III	ACNGT	1 cut(s)	599
HpyCH4IV	ACGT	1 cut(s)	514
HpyCH4V	TGCA	3 cut(s)	398, 485, 614
HpyF10VI	GCNNNNNNNGC	3 cut(s)	63, 115, 118
HpyF3I	CTNAG	2 cut(s)	315, 386
HpySE526I	ACGT	1 cut(s)	514
Hsp92II	CATG	2 cut(s)	641, 742
Kzo9I	GATC	3 cut(s)	211, 433, 633
LmnI	GCTCC	5 cut(s)	16, 38, 54, 101, 587
Lsp1109I	GCAGC	6 cut(s)	42, 57, 96, 266, 521, 602
LweI	GCATC	1 cut(s)	397
MaeI	CTAG	1 cut(s)	726
MaeII	ACGT	1 cut(s)	514
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	3 cut(s)	213, 435, 635
MboI	GATC	3 cut(s)	211, 433, 633
MboII	GAAGA	3 cut(s)	91, 476, 738
MflI	RGATCY	2 cut(s)	211, 633
MhlI	GDGCHC	1 cut(s)	106
MluCI	AATT	6 cut(s)	365, 424, 574, 615, 704, 754
MlyI	GAGTC	1 cut(s)	304
MnlI	CCTC	7 cut(s)	41, 167, 300, 324, 406, 733, 784
MseI	TTAA	1 cut(s)	752
MslI	CAYNNNNRTG	1 cut(s)	236
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	4 cut(s)	20, 139, 177, 719
MspR9I	CCNGG	4 cut(s)	21, 139, 643, 719
MvaI	CCWGG	1 cut(s)	643
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	3 cut(s)	63, 115, 118
NciI	CCSGG	3 cut(s)	21, 139, 719
NdeI	CATATG	1 cut(s)	394
NdeII	GATC	3 cut(s)	211, 433, 633
NlaIII	CATG	2 cut(s)	641, 742
NlaIV	GGNNCC	3 cut(s)	18, 146, 684
NspI	RCATGY	1 cut(s)	742
PciI	ACATGT	1 cut(s)	738
PcsI	WCGNNNNNNNCGW	2 cut(s)	156, 520
PfeI	GAWTC	1 cut(s)	38
Pfl23II	CGTACG	1 cut(s)	699
PflMI	CCANNNNNTGG	1 cut(s)	141
PkrI	GCNGC	9 cut(s)	29, 32, 72, 111, 120, 205, 256, 536, 592
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
PscI	ACATGT	1 cut(s)	738
Psp124BI	GAGCTC	1 cut(s)	106
Psp1406I	AACGTT	1 cut(s)	514
Psp6I	CCWGG	1 cut(s)	641
PspFI	CCCAGC	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	641
PspLI	CGTACG	1 cut(s)	699
PspN4I	GGNNCC	3 cut(s)	18, 146, 684
PspPI	GGNCC	4 cut(s)	145, 445, 683, 695
PstNI	CAGNNNCTG	1 cut(s)	257
PsuI	RGATCY	2 cut(s)	211, 633
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	6 cut(s)	287, 419, 596, 601, 701, 730
RsaNI	GTAC	6 cut(s)	286, 418, 595, 600, 700, 729
RseI	CAYNNNNRTG	1 cut(s)	236
SacI	GAGCTC	1 cut(s)	106
SaqAI	TTAA	1 cut(s)	752
SatI	GCNGC	9 cut(s)	28, 31, 71, 110, 119, 204, 255, 535, 591
Sau3AI	GATC	3 cut(s)	211, 433, 633
Sau96I	GGNCC	4 cut(s)	145, 445, 683, 695
SchI	GAGTC	1 cut(s)	304
ScrFI	CCNGG	4 cut(s)	21, 139, 643, 719
SduI	GDGCHC	1 cut(s)	106
SfaNI	GCATC	1 cut(s)	397
SinI	GGWCC	4 cut(s)	145, 445, 683, 695
SmiMI	CAYNNNNRTG	1 cut(s)	236
Sse9I	AATT	6 cut(s)	365, 424, 574, 615, 704, 754
SsiI	CCGC	9 cut(s)	27, 42, 66, 99, 118, 154, 203, 410, 557
SspMI	CTAG	1 cut(s)	726
SstI	GAGCTC	1 cut(s)	106
StyD4I	CCNGG	4 cut(s)	19, 137, 641, 717
TaaI	ACNGT	1 cut(s)	599
TaiI	ACGT	1 cut(s)	517
TaqI	TCGA	1 cut(s)	328
TasI	AATT	6 cut(s)	365, 424, 574, 615, 704, 754
TatI	WGTACW	3 cut(s)	285, 417, 599
TauI	GCSGC	3 cut(s)	30, 121, 206
TfiI	GAWTC	1 cut(s)	38
Tru1I	TTAA	1 cut(s)	752
Tru9I	TTAA	1 cut(s)	752
TseI	GCWGC	6 cut(s)	30, 70, 109, 254, 534, 590
TspDTI	ATGAA	2 cut(s)	558, 608
TspGWI	ACGGA	1 cut(s)	687
Van91I	CCANNNNNTGG	1 cut(s)	141
VpaK11BI	GGWCC	4 cut(s)	145, 445, 683, 695
XagI	CCTNNNNNAGG	1 cut(s)	646
XapI	RAATTY	3 cut(s)	424, 704, 754
XceI	RCATGY	1 cut(s)	742
XspI	CTAG	1 cut(s)	726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.