Rmu_sc0001576.1_g000009

Chromophore lyase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001576.1
Physical Location & Seq
Forward (+)
32560 .. 37599
5040 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001576.1_g000009.1.cds

Sequence Viewer

Length: 1239 bp
atggattggcagagagctccaaagaaaagcgatggccgtaggaactactatgacatccttgaagtgcctaagaattcttcacaagatgatctgaaaaaggcttatagaagagcagccatgaagcaccatcccgataagggtggtgatgtagaaaagttcaaagagttgggccacgcatacaaggttctgtgcgatccacagcaacgtgtcatctatgaccgggacggtgaggatcagtttggcgaggacatgtacggtgaggaccggtatggcaaggaccaatacggtgagtacaagtacagccagaacagatacggtcaggactggtactggtactggtactggtacggttcgaaccaatacggtcaggactggtacgggaatcggtacgaccagggctggtacggccagaaccggtatggtaaggaaaagtatagcaaggaccgagatcagactggcgagcaaagggatgtagttagactaatctggctttgtttcaccgaaatgggtatcgggtcggagtcgggtagcgggagcggctcggacgactcgtcgtcttcgggaggatggagcgtggcgcgcgggttagtggtgaagacggtggttttgatcggcggagctctgttgctgaagcgactgaccaagtccacgacccggtgggaccacgcccgccacgtcacccgctccctctccggtgagaagttctccaaggaccaagccgccagggatcctgaccactacttcaacatcagaatgagcagttgccctgcagctgagatggtggacggttctaaagttttgtactttgaacaagcgttttggaggagtcctaagaagccatttaggcagagattttatatggtgaagccttgcccgaaagagttgaagtgtgatgttgaggacattgcagagcatttgacaacagtgcatcttaaacgttgtgagcgtggaaaacgctgcttatatgaagggtcaactccacctgccagtttccctaattcatggaatggagcatcatactgtacttcggaacttgcaattcttaaaaataatgagatacattcatgggataggggatataacgatgaaggaaatcaagtttggggaccaaaggaaggtccgtatgaattcaagcccgcacctgcctccagtatgaatgacatgttttcttctttaaattttcctattcagcagtctatcgagaaaagaatagagggttcatttgtcttgcaagaatga

Protein Analysis

412

Amino Acids

47.88

Weight (kDa)

7.96

Isoelectric Point (pI)

43.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0012201)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 991, 1150
Acc36I ACCTGC 2 cut(s) 991, 1150
AccBSI CCGCTC 2 cut(s) 537, 684
AccII CGCG 2 cut(s) 580, 582
AciI CCGC 8 cut(s) 531, 537, 582, 615, 670, 682, 720, 1137
AclI AACGTT 1 cut(s) 937
AclWI GGATC 4 cut(s) 188, 240, 722, 735
AcoI YGGCCR 2 cut(s) 34, 406
AcsI RAATTY 3 cut(s) 73, 1127, 1177
AcuI CTGAAG 1 cut(s) 650
AfiI CCNNNNNNNGG 3 cut(s) 137, 654, 1115
AflIII ACRYGT 3 cut(s) 205, 249, 1161
AgeI ACCGGT 2 cut(s) 264, 414
AgsI TTSAA 6 cut(s) 62, 160, 745, 809, 886, 1132
AhdI GACNNNNNGTC 2 cut(s) 550, 553
AjiI CACGTC 1 cut(s) 676
AjnI CCWGG 2 cut(s) 393, 722
AjuI GAANNNNNNNTTGG 2 cut(s) 1084, 1116
AluBI AGCT 3 cut(s) 17, 620, 773
AluI AGCT 3 cut(s) 17, 620, 773
Alw21I GWGCWC 2 cut(s) 19, 622
AlwI GGATC 4 cut(s) 188, 240, 722, 735
AoxI GGCC 3 cut(s) 34, 169, 406
ApeKI GCWGC 3 cut(s) 113, 770, 957
ApoI RAATTY 3 cut(s) 73, 1127, 1177
ArsI GACNNNNNNTTYG 2 cut(s) 589, 621
AsiGI ACCGGT 2 cut(s) 264, 414
AspLEI GCGC 2 cut(s) 580, 582
AspS9I GGNCC 8 cut(s) 169, 262, 277, 442, 661, 712, 1106, 1118
AsuC2I CCSGG 2 cut(s) 221, 655
AsuHPI GGTGA 9 cut(s) 155, 239, 269, 299, 490, 604, 670, 707, 874
AsuII TTCGAA 1 cut(s) 353
AvaII GGWCC 7 cut(s) 262, 277, 442, 661, 712, 1106, 1118
BamHI GGATCC 1 cut(s) 727
BanII GRGCYC 2 cut(s) 19, 622
BbsI GAAGAC 2 cut(s) 549, 602
Bbv12I GWGCWC 2 cut(s) 19, 622
BbvI GCAGC 3 cut(s) 125, 782, 944
BccI CCATC 4 cut(s) 26, 135, 561, 772
BceAI ACGGC 2 cut(s) 21, 421
BciT130I CCWGG 2 cut(s) 395, 724
BcnI CCSGG 2 cut(s) 221, 655
BfmI CTRYAG 1 cut(s) 768
BfuAI ACCTGC 2 cut(s) 991, 1150
BglI GCCNNNNNGGC 1 cut(s) 844
BisI GCNGC 5 cut(s) 114, 538, 720, 771, 958
BlsI GCNGC 5 cut(s) 115, 539, 721, 772, 959
Bme1390I CCNGG 4 cut(s) 221, 395, 655, 724
Bme18I GGWCC 7 cut(s) 262, 277, 442, 661, 712, 1106, 1118
BmeRI GACNNNNNGTC 2 cut(s) 550, 553
BmgBI CACGTC 1 cut(s) 676
BmgT120I GGNCC 8 cut(s) 169, 262, 277, 442, 661, 712, 1106, 1118
BmiI GGNNCC 3 cut(s) 662, 729, 1107
BmrFI CCNGG 4 cut(s) 221, 395, 655, 724
BmsI GCATC 2 cut(s) 937, 1022
BpiI GAAGAC 2 cut(s) 549, 602
BplI GAGNNNNNCTC 2 cut(s) 689, 721
BpmI CTGGAG 1 cut(s) 1132
Bpu14I TTCGAA 1 cut(s) 353
BpuMI CCSGG 2 cut(s) 221, 655
BsaJI CCNNGG 3 cut(s) 394, 708, 723
BsaWI WCCGGW 3 cut(s) 264, 414, 692
Bsc4I CCNNNNNNNGG 3 cut(s) 137, 654, 1115
Bse118I RCCGGY 2 cut(s) 264, 414
Bse1I ACTGG 8 cut(s) 329, 335, 341, 347, 377, 460, 987, 1149
Bse3DI GCAATG 1 cut(s) 903
BseBI CCWGG 2 cut(s) 395, 724
BseDI CCNNGG 3 cut(s) 394, 708, 723
BseGI GGATG 4 cut(s) 54, 127, 475, 572
BseLI CCNNNNNNNGG 3 cut(s) 137, 654, 1115
BseMI GCAATG 1 cut(s) 903
BseMII CTCAG 1 cut(s) 765
BseNI ACTGG 8 cut(s) 329, 335, 341, 347, 377, 460, 987, 1149
BsePI GCGCGC 1 cut(s) 578
BseRI GAGGAG 1 cut(s) 838
BseXI GCAGC 3 cut(s) 125, 782, 944
Bsh1236I CGCG 2 cut(s) 580, 582
BshFI GGCC 3 cut(s) 36, 171, 408
BshTI ACCGGT 2 cut(s) 264, 414
BsiHKAI GWGCWC 2 cut(s) 19, 622
BsiSI CCGG 5 cut(s) 220, 265, 415, 655, 693
BslFI GGGAC 3 cut(s) 236, 674, 1119
BslI CCNNNNNNNGG 3 cut(s) 137, 654, 1115
BsmFI GGGAC 3 cut(s) 236, 674, 1119
BsnI GGCC 3 cut(s) 36, 171, 408
Bsp119I TTCGAA 1 cut(s) 353
Bsp1286I GDGCHC 2 cut(s) 19, 622
Bsp143I GATC 6 cut(s) 88, 193, 232, 448, 609, 727
BspACI CCGC 8 cut(s) 531, 537, 582, 615, 670, 682, 720, 1137
BspANI GGCC 3 cut(s) 36, 171, 408
BspCNI CTCAG 1 cut(s) 766
BspFNI CGCG 2 cut(s) 580, 582
BspLI GGNNCC 3 cut(s) 662, 729, 1107
BspMAI CTGCAG 1 cut(s) 772
BspMI ACCTGC 2 cut(s) 991, 1150
BspPI GGATC 4 cut(s) 188, 240, 722, 735
BspQI GCTCTTC 1 cut(s) 103
BspT104I TTCGAA 1 cut(s) 353
BsrBI CCGCTC 2 cut(s) 537, 684
BsrDI GCAATG 1 cut(s) 903
BsrFI RCCGGY 2 cut(s) 264, 414
BsrI ACTGG 8 cut(s) 329, 335, 341, 347, 377, 460, 987, 1149
BssAI RCCGGY 2 cut(s) 264, 414
BssECI CCNNGG 3 cut(s) 394, 708, 723
BssHII GCGCGC 1 cut(s) 578
BssMI GATC 6 cut(s) 88, 193, 232, 448, 609, 727
BssT1I CCWWGG 1 cut(s) 708
Bst2UI CCWGG 2 cut(s) 395, 724
Bst6I CTCTTC 1 cut(s) 103
BstBI TTCGAA 1 cut(s) 353
BstC8I GCNNGC 4 cut(s) 461, 580, 670, 1137
BstDEI CTNAG 3 cut(s) 69, 774, 831
BstF5I GGATG 4 cut(s) 54, 127, 475, 572
BstFNI CGCG 2 cut(s) 580, 582
BstHHI GCGC 2 cut(s) 580, 582
BstKTI GATC 6 cut(s) 91, 196, 235, 451, 612, 730
BstMBI GATC 6 cut(s) 88, 193, 232, 448, 609, 727
BstMWI GCNNNNNNNGC 4 cut(s) 405, 537, 579, 844
BstNI CCWGG 2 cut(s) 395, 724
BstNSI RCATGY 2 cut(s) 253, 1165
BstSCI CCNGG 4 cut(s) 219, 393, 653, 722
BstSFI CTRYAG 1 cut(s) 768
BstUI CGCG 2 cut(s) 580, 582
BstV1I GCAGC 3 cut(s) 125, 782, 944
BstV2I GAAGAC 2 cut(s) 549, 602
BstX2I RGATCY 1 cut(s) 727
BstYI RGATCY 1 cut(s) 727
BsuRI GGCC 3 cut(s) 36, 171, 408
BtgZI GCGATG 1 cut(s) 45
BtrI CACGTC 1 cut(s) 676
BtsCI GGATG 4 cut(s) 54, 127, 475, 572
BtsIMutI CAGTG 1 cut(s) 930
BveI ACCTGC 2 cut(s) 991, 1150
Cac8I GCNNGC 4 cut(s) 461, 580, 670, 1137
CfoI GCGC 2 cut(s) 580, 582
Cfr10I RCCGGY 2 cut(s) 264, 414
Cfr13I GGNCC 8 cut(s) 169, 262, 277, 442, 661, 712, 1106, 1118
CspAI ACCGGT 2 cut(s) 264, 414
CviAII CATG 5 cut(s) 118, 250, 1002, 1065, 1162
DdeI CTNAG 3 cut(s) 69, 774, 831
DpnI GATC 6 cut(s) 90, 195, 234, 450, 611, 729
DpnII GATC 6 cut(s) 88, 193, 232, 448, 609, 727
DraI TTTAAA 1 cut(s) 1176
DriI GACNNNNNGTC 2 cut(s) 550, 553
EaeI YGGCCR 2 cut(s) 34, 406
Eam1104I CTCTTC 1 cut(s) 103
Eam1105I GACNNNNNGTC 2 cut(s) 550, 553
EarI CTCTTC 1 cut(s) 103
EciI GGCGGA 1 cut(s) 630
Ecl136II GAGCTC 2 cut(s) 17, 620
Eco130I CCWWGG 1 cut(s) 708
Eco24I GRGCYC 2 cut(s) 19, 622
Eco47I GGWCC 7 cut(s) 262, 277, 442, 661, 712, 1106, 1118
Eco53kI GAGCTC 2 cut(s) 17, 620
Eco57I CTGAAG 1 cut(s) 650
EcoICRI GAGCTC 2 cut(s) 17, 620
EcoRI GAATTC 2 cut(s) 73, 1127
EcoRII CCWGG 2 cut(s) 393, 722
EcoT14I CCWWGG 1 cut(s) 708
EcoT38I GRGCYC 2 cut(s) 19, 622
ErhI CCWWGG 1 cut(s) 708
FaeI CATG 5 cut(s) 121, 253, 1005, 1068, 1165
FaqI GGGAC 3 cut(s) 236, 674, 1119
FatI CATG 5 cut(s) 117, 249, 1001, 1064, 1161
FauI CCCGC 5 cut(s) 524, 575, 677, 689, 1144
Fnu4HI GCNGC 5 cut(s) 114, 538, 720, 771, 958
FokI GGATG 4 cut(s) 41, 114, 482, 579
FriOI GRGCYC 2 cut(s) 19, 622
Fsp4HI GCNGC 5 cut(s) 114, 538, 720, 771, 958
GlaI GCGC 2 cut(s) 579, 581
GluI GCNGC 5 cut(s) 114, 538, 720, 771, 958
GsuI CTGGAG 1 cut(s) 1132
HaeIII GGCC 3 cut(s) 36, 171, 408
HapII CCGG 5 cut(s) 220, 265, 415, 655, 693
HhaI GCGC 2 cut(s) 580, 582
Hin1II CATG 5 cut(s) 121, 253, 1005, 1068, 1165
Hin6I GCGC 2 cut(s) 578, 580
HinP1I GCGC 2 cut(s) 578, 580
HincII GTYRAC 1 cut(s) 975
HindII GTYRAC 1 cut(s) 975
HinfI GANTC 4 cut(s) 382, 521, 548, 826
HpaII CCGG 5 cut(s) 220, 265, 415, 655, 693
HphI GGTGA 9 cut(s) 155, 239, 269, 299, 490, 604, 670, 707, 874
Hpy166II GTNNAC 3 cut(s) 648, 784, 975
Hpy188I TCNGA 6 cut(s) 93, 453, 520, 544, 752, 1030
Hpy188III TCNNGA 6 cut(s) 131, 320, 368, 561, 731, 1201
Hpy8I GTNNAC 3 cut(s) 648, 784, 975
Hpy99I CGWCG 1 cut(s) 556
HpyAV CCTTC 3 cut(s) 962, 1082, 1109
HpyCH4IV ACGT 3 cut(s) 205, 675, 937
HpyCH4V TGCA 5 cut(s) 770, 908, 928, 1037, 1231
HpyF10VI GCNNNNNNNGC 4 cut(s) 405, 537, 579, 844
HpyF3I CTNAG 3 cut(s) 69, 774, 831
HpySE526I ACGT 3 cut(s) 205, 675, 937
Hsp92II CATG 5 cut(s) 121, 253, 1005, 1068, 1165
HspAI GCGC 2 cut(s) 578, 580
Kzo9I GATC 6 cut(s) 88, 193, 232, 448, 609, 727
LguI GCTCTTC 1 cut(s) 103
LmnI GCTCC 6 cut(s) 22, 534, 570, 617, 689, 1010
Lsp1109I GCAGC 3 cut(s) 125, 782, 944
LweI GCATC 2 cut(s) 937, 1022
MaeII ACGT 3 cut(s) 205, 675, 937
MaeIII GTNAC 1 cut(s) 676
MalI GATC 6 cut(s) 90, 195, 234, 450, 611, 729
MbiI CCGCTC 2 cut(s) 537, 684
MboI GATC 6 cut(s) 88, 193, 232, 448, 609, 727
MboII GAAGA 5 cut(s) 69, 120, 549, 607, 1161
MflI RGATCY 1 cut(s) 727
MhlI GDGCHC 2 cut(s) 19, 622
MluCI AATT 5 cut(s) 73, 997, 1038, 1127, 1177
MlyI GAGTC 3 cut(s) 530, 542, 835
MmeI TCCRAC 1 cut(s) 498
MnlI CCTC 9 cut(s) 223, 238, 253, 557, 698, 816, 892, 1156, 1207
MseI TTAA 3 cut(s) 933, 1044, 1175
MslI CAYNNNNRTG 2 cut(s) 503, 752
MspA1I CMGCKG 1 cut(s) 773
MspI CCGG 5 cut(s) 220, 265, 415, 655, 693
MspR9I CCNGG 4 cut(s) 221, 395, 655, 724
MvaI CCWGG 2 cut(s) 395, 724
MvnI CGCG 2 cut(s) 580, 582
MwoI GCNNNNNNNGC 4 cut(s) 405, 537, 579, 844
NciI CCSGG 2 cut(s) 221, 655
NdeII GATC 6 cut(s) 88, 193, 232, 448, 609, 727
NlaIII CATG 5 cut(s) 121, 253, 1005, 1068, 1165
NlaIV GGNNCC 3 cut(s) 662, 729, 1107
NmuCI GTSAC 1 cut(s) 676
NspI RCATGY 2 cut(s) 253, 1165
NspV TTCGAA 1 cut(s) 353
PaqCI CACCTGC 2 cut(s) 991, 1150
PauI GCGCGC 1 cut(s) 578
PciI ACATGT 2 cut(s) 249, 1161
PciSI GCTCTTC 1 cut(s) 103
PcsI WCGNNNNNNNCGW 3 cut(s) 548, 672, 943
PfeI GAWTC 1 cut(s) 382
PflFI GACNNNGTC 1 cut(s) 643
PinAI ACCGGT 2 cut(s) 264, 414
PkrI GCNGC 5 cut(s) 115, 539, 721, 772, 959
PleI GAGTC 3 cut(s) 529, 542, 834
PpsI GAGTC 3 cut(s) 529, 542, 834
PscI ACATGT 2 cut(s) 249, 1161
Psp124BI GAGCTC 2 cut(s) 19, 622
Psp1406I AACGTT 1 cut(s) 937
Psp6I CCWGG 2 cut(s) 393, 722
PspGI CCWGG 2 cut(s) 393, 722
PspN4I GGNNCC 3 cut(s) 662, 729, 1107
PspPI GGNCC 8 cut(s) 169, 262, 277, 442, 661, 712, 1106, 1118
PstI CTGCAG 1 cut(s) 772
PsuI RGATCY 1 cut(s) 727
PsyI GACNNNGTC 1 cut(s) 643
PteI GCGCGC 1 cut(s) 578
PvuII CAGCTG 1 cut(s) 773
RseI CAYNNNNRTG 2 cut(s) 503, 752
SacI GAGCTC 2 cut(s) 19, 622
SapI GCTCTTC 1 cut(s) 103
SaqAI TTAA 3 cut(s) 933, 1044, 1175
SatI GCNGC 5 cut(s) 114, 538, 720, 771, 958
Sau3AI GATC 6 cut(s) 88, 193, 232, 448, 609, 727
Sau96I GGNCC 8 cut(s) 169, 262, 277, 442, 661, 712, 1106, 1118
SchI GAGTC 3 cut(s) 530, 542, 835
ScrFI CCNGG 4 cut(s) 221, 395, 655, 724
SduI GDGCHC 2 cut(s) 19, 622
SfaNI GCATC 2 cut(s) 937, 1022
SfcI CTRYAG 1 cut(s) 768
SfuI TTCGAA 1 cut(s) 353
SinI GGWCC 7 cut(s) 262, 277, 442, 661, 712, 1106, 1118
SmiMI CAYNNNNRTG 2 cut(s) 503, 752
Sse9I AATT 5 cut(s) 73, 997, 1038, 1127, 1177
SsiI CCGC 8 cut(s) 531, 537, 582, 615, 670, 682, 720, 1137
SstI GAGCTC 2 cut(s) 19, 622
StyD4I CCNGG 4 cut(s) 219, 393, 653, 722
StyI CCWWGG 1 cut(s) 708
TaiI ACGT 3 cut(s) 208, 678, 940
TaqI TCGA 2 cut(s) 353, 1200
TaqII GACCGA 1 cut(s) 459
TasI AATT 5 cut(s) 73, 997, 1038, 1127, 1177
TatI WGTACW 4 cut(s) 291, 297, 801, 1022
TauI GCSGC 2 cut(s) 540, 722
TfiI GAWTC 1 cut(s) 382
Tru1I TTAA 3 cut(s) 933, 1044, 1175
Tru9I TTAA 3 cut(s) 933, 1044, 1175
TscAI CASTG 1 cut(s) 930
TseFI GTSAC 1 cut(s) 676
TseI GCWGC 3 cut(s) 113, 770, 957
Tsp45I GTSAC 1 cut(s) 676
TspDTI ATGAA 8 cut(s) 134, 981, 990, 1053, 1101, 1140, 1169, 1209
TspGWI ACGGA 1 cut(s) 1110
TspRI CASTG 1 cut(s) 930
Tth111I GACNNNGTC 1 cut(s) 643
VpaK11BI GGWCC 7 cut(s) 262, 277, 442, 661, 712, 1106, 1118
XapI RAATTY 3 cut(s) 73, 1127, 1177
XceI RCATGY 2 cut(s) 253, 1165
XcmI CCANNNNNNNNNTGG 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.