AT5G51030

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012340
Physical Location & Seq
Reverse (-)
20747680 .. 20749506
1827 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G51030.1

Sequence Viewer

Length: 945 bp
ATGGTAGGAAGCAAAGAAAAATCGAAAGAGAAACGAGATAAGAGACTCCAAGAGATCTCCCTCCTTCGTACTATTCCCTATTCTGATCACCAGAGGTGGTGGACCTCTGAAACCGTGGCGGTGGTAACAGGTGCGAATAGAGGAATAGGATTTGAGATGGTGAGACAATTGGCTGGACATGGACTAACAGTTATTCTAACATCAAGAGACGAGAATGTAGGCGTCGAAGCCGCCAAGATCCTTCAAGAAGGTGGATTCAATGTTGATTTCCACCGCCTCGATATCTTGGACTCTTCCTCAATCCAAGAGTTTTGCGAATGGATTAAAGAAAAATATGGATTTATTGATGTTTTAATTAATAATGCAGGAGTAAACTACAATGTTGGATCAGATAACTCTGTTGAATTCTCGCATATGGTTATATCTACCAACTACTATGGCACCAAGAACATAATCAACGCCATGATTCCACTAATGAGACATGCTTGTCAAGGAGCTCGTATTGTCAATGTCACTTCAAGGCTCGGTAGATTAAAAGGCCGACACAGTAAACTTGAGAATGAAGACGTGAGAGCCAAGCTTATGGATGTGGACTCTCTAACTGAAGAAATCGTTGACAAAACAGTATCAGAGTTTTTGAAACAAGTGGAAGAAGGAACATGGGAATCTGGAGGTTGGCCACATTCCTTCACAGACTACTCTGTCTCCAAAATGGCGGTGAACGCATACACAAGAGTACTAGCTAAAGAACTATCCGAGAGACCAGAGGGAGAGAAGATATATGCAAACTGTTTTTGTCCCGGTTGGGTGAAAACCGCAATGACAGGCTATGCAGGGAACGTTTCAGCAGAAGATGGAGCTGACACTGGAGTCTGGCTTGCATTGCTTCCTGATCAAGCTATCACCGGAAAGTTCTTCGCCGAGAGACGTGAGATCAGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204
Pfam Domains
Protein Families
adh_short

Protein Analysis

314

Amino Acids

35.19

Weight (kDa)

5.74

Isoelectric Point (pI)

31.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 39 - 180 4e-28 short chain dehydrogenase
KR PF08659 40 - 151 3.9e-08 KR domain
Epimerase PF01370 41 - 156 1.3e-06 NAD dependent epimerase/dehydratase family
adh_short_C2 PF13561 44 - 176 2.5e-19 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 230 - 276 1.2e-06 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012340)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51030
fragaria_vesca FvH4_5g09740 FvH4_5g09740 FvH4_5g09740
malus_domestica MD00G1129700.v1.1 MD14G1145700.v1.1
prunus_persica Prupe.5G140000_v2.0.a1
pyrus_communis pycom06g12030 pycom14g12070
rosa_chinensis RchiOBHm_Chr7g0188491
rosa_laevigata RLG00000004690
rosa_multiflora Rmu_sc0001576.1_g000006 Rmu_sc0016427.1_g000004
rosa_roxburghii Rroxscaffold_3G00266360
rosa_rugosa Rorug06G0490900
rosa_samantha Rh7AG095500 Rh7BG097200 Rh7DG097400
rosa_wichuraiana Rw7G008250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 486, 701, 869
AccB1I GGYRCC 1 cut(s) 440
AciI CCGC 5 cut(s) 119, 231, 274, 716, 816
AclI AACGTT 1 cut(s) 840
AclWI GGATC 2 cut(s) 232, 394
AcoI YGGCCR 1 cut(s) 677
AcsI RAATTY 1 cut(s) 404
AcuI CTGAAG 1 cut(s) 624
AcyI GRCGYC 1 cut(s) 222
AfaI GTAC 2 cut(s) 70, 738
AgsI TTSAA 5 cut(s) 245, 259, 404, 519, 640
AjiI CACGTC 2 cut(s) 568, 929
AluBI AGCT 5 cut(s) 497, 580, 743, 860, 899
AluI AGCT 5 cut(s) 497, 580, 743, 860, 899
Alw21I GWGCWC 1 cut(s) 499
Alw26I GTCTC 7 cut(s) 37, 157, 201, 472, 709, 754, 919
AlwI GGATC 2 cut(s) 232, 394
AoxI GGCC 2 cut(s) 538, 677
ApoI RAATTY 1 cut(s) 404
AseI ATTAAT 1 cut(s) 357
AspS9I GGNCC 1 cut(s) 102
AsuC2I CCSGG 1 cut(s) 801
AsuHPI GGTGA 5 cut(s) 80, 172, 730, 820, 895
AvaII GGWCC 1 cut(s) 102
BalI TGGCCA 1 cut(s) 679
BanI GGYRCC 1 cut(s) 440
BanII GRGCYC 1 cut(s) 499
BbsI GAAGAC 1 cut(s) 570
Bbv12I GWGCWC 1 cut(s) 499
BccI CCATC 2 cut(s) 151, 848
BclI TGATCA 2 cut(s) 85, 892
BcnI CCSGG 1 cut(s) 801
BcoDI GTCTC 7 cut(s) 37, 157, 201, 472, 709, 754, 919
BfaI CTAG 1 cut(s) 740
BglII AGATCT 1 cut(s) 54
BisI GCNGC 1 cut(s) 231
BlsI GCNGC 1 cut(s) 232
BmcAI AGTACT 1 cut(s) 738
Bme1390I CCNGG 1 cut(s) 801
Bme18I GGWCC 1 cut(s) 102
BmgBI CACGTC 2 cut(s) 568, 929
BmgT120I GGNCC 1 cut(s) 102
BmiI GGNNCC 1 cut(s) 442
BmrFI CCNGG 1 cut(s) 801
BpiI GAAGAC 1 cut(s) 570
BpmI CTGGAG 2 cut(s) 690, 888
BpuEI CTTGAG 1 cut(s) 575
BpuMI CCSGG 1 cut(s) 801
BsaHI GRCGYC 1 cut(s) 222
BsaI GGTCTC 1 cut(s) 754
BsaJI CCNNGG 1 cut(s) 114
BsaWI WCCGGW 1 cut(s) 905
BsaXI ACNNNNNCTCC 2 cut(s) 689, 719
Bse1I ACTGG 1 cut(s) 871
Bse3DI GCAATG 2 cut(s) 825, 881
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 1 cut(s) 592
BseMI GCAATG 2 cut(s) 825, 881
BseNI ACTGG 1 cut(s) 871
BshFI GGCC 2 cut(s) 540, 679
BshNI GGYRCC 1 cut(s) 440
BsiHKAI GWGCWC 1 cut(s) 499
BsiSI CCGG 2 cut(s) 801, 906
BslFI GGGAC 1 cut(s) 783
BsmAI GTCTC 7 cut(s) 37, 157, 201, 472, 709, 754, 919
BsmBI CGTCTC 2 cut(s) 201, 919
BsmFI GGGAC 1 cut(s) 783
BsnI GGCC 2 cut(s) 540, 679
Bso31I GGTCTC 1 cut(s) 754
Bsp1286I GDGCHC 1 cut(s) 499
Bsp143I GATC 6 cut(s) 54, 85, 237, 386, 892, 933
BspACI CCGC 5 cut(s) 119, 231, 274, 716, 816
BspANI GGCC 2 cut(s) 540, 679
BspLI GGNNCC 1 cut(s) 442
BspPI GGATC 2 cut(s) 232, 394
BspT107I GGYRCC 1 cut(s) 440
BspTNI GGTCTC 1 cut(s) 754
BsrDI GCAATG 2 cut(s) 825, 881
BsrI ACTGG 1 cut(s) 871
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 6 cut(s) 54, 85, 237, 386, 892, 933
BssNI GRCGYC 1 cut(s) 222
Bst4CI ACNGT 5 cut(s) 115, 190, 548, 625, 791
Bst6I CTCTTC 1 cut(s) 298
BstACI GRCGYC 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 879
BstDSI CCRYGG 1 cut(s) 114
BstF5I GGATG 1 cut(s) 592
BstKTI GATC 6 cut(s) 57, 88, 240, 389, 895, 936
BstMAI GTCTC 7 cut(s) 37, 157, 201, 472, 709, 754, 919
BstMBI GATC 6 cut(s) 54, 85, 237, 386, 892, 933
BstMWI GCNNNNNNNGC 2 cut(s) 722, 883
BstNSI RCATGY 1 cut(s) 485
BstSCI CCNGG 1 cut(s) 799
BstV2I GAAGAC 1 cut(s) 570
BstX2I RGATCY 2 cut(s) 54, 237
BstXI CCANNNNNNTGG 1 cut(s) 583
BstYI RGATCY 2 cut(s) 54, 237
BsuRI GGCC 2 cut(s) 540, 679
BtgI CCRYGG 1 cut(s) 114
BtrI CACGTC 2 cut(s) 568, 929
BtsCI GGATG 1 cut(s) 592
BtsIMutI CAGTG 1 cut(s) 864
Cac8I GCNNGC 1 cut(s) 879
Cfr13I GGNCC 1 cut(s) 102
CseI GACGC 1 cut(s) 211
Csp6I GTAC 2 cut(s) 69, 737
CviAII CATG 4 cut(s) 179, 463, 482, 660
CviQI GTAC 2 cut(s) 69, 737
DpnI GATC 6 cut(s) 56, 87, 239, 388, 894, 935
DpnII GATC 6 cut(s) 54, 85, 237, 386, 892, 933
DrdI GACNNNNNNGTC 3 cut(s) 486, 701, 869
DseDI GACNNNNNNGTC 3 cut(s) 486, 701, 869
EaeI YGGCCR 1 cut(s) 677
Eam1104I CTCTTC 1 cut(s) 298
EarI CTCTTC 1 cut(s) 298
Ecl136II GAGCTC 1 cut(s) 497
Eco24I GRGCYC 1 cut(s) 499
Eco31I GGTCTC 1 cut(s) 754
Eco32I GATATC 1 cut(s) 283
Eco47I GGWCC 1 cut(s) 102
Eco53kI GAGCTC 1 cut(s) 497
Eco57I CTGAAG 1 cut(s) 624
EcoICRI GAGCTC 1 cut(s) 497
EcoRI GAATTC 1 cut(s) 404
EcoRV GATATC 1 cut(s) 283
EcoT38I GRGCYC 1 cut(s) 499
Esp3I CGTCTC 2 cut(s) 201, 919
FaeI CATG 4 cut(s) 182, 466, 485, 663
FaqI GGGAC 1 cut(s) 783
FatI CATG 4 cut(s) 178, 462, 481, 659
FauNDI CATATG 1 cut(s) 414
FbaI TGATCA 2 cut(s) 85, 892
Fnu4HI GCNGC 1 cut(s) 231
FokI GGATG 1 cut(s) 599
FriOI GRGCYC 1 cut(s) 499
Fsp4HI GCNGC 1 cut(s) 231
FspBI CTAG 1 cut(s) 740
GluI GCNGC 1 cut(s) 231
GsuI CTGGAG 2 cut(s) 690, 888
HaeIII GGCC 2 cut(s) 540, 679
HapII CCGG 2 cut(s) 801, 906
HgaI GACGC 1 cut(s) 211
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 4 cut(s) 182, 466, 485, 663
HincII GTYRAC 1 cut(s) 616
HindII GTYRAC 1 cut(s) 616
HindIII AAGCTT 1 cut(s) 578
HinfI GANTC 7 cut(s) 45, 255, 290, 466, 593, 665, 870
HpaII CCGG 2 cut(s) 801, 906
HphI GGTGA 5 cut(s) 80, 172, 730, 820, 895
Hpy166II GTNNAC 6 cut(s) 102, 373, 551, 592, 616, 721
Hpy188I TCNGA 5 cut(s) 85, 109, 391, 631, 757
Hpy188III TCNNGA 4 cut(s) 204, 245, 669, 890
Hpy8I GTNNAC 6 cut(s) 102, 373, 551, 592, 616, 721
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 5 cut(s) 74, 242, 251, 647, 697
HpyCH4III ACNGT 5 cut(s) 115, 190, 548, 625, 791
HpyCH4IV ACGT 3 cut(s) 567, 840, 928
HpyCH4V TGCA 4 cut(s) 365, 785, 833, 881
HpyF10VI GCNNNNNNNGC 2 cut(s) 722, 883
HpySE526I ACGT 3 cut(s) 567, 840, 928
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 4 cut(s) 182, 466, 485, 663
Ksp22I TGATCA 2 cut(s) 85, 892
Kzo9I GATC 6 cut(s) 54, 85, 237, 386, 892, 933
LmnI GCTCC 2 cut(s) 494, 857
MaeI CTAG 1 cut(s) 740
MaeII ACGT 3 cut(s) 567, 840, 928
MaeIII GTNAC 2 cut(s) 124, 511
MalI GATC 6 cut(s) 56, 87, 239, 388, 894, 935
MboI GATC 6 cut(s) 54, 85, 237, 386, 892, 933
MboII GAAGA 7 cut(s) 285, 575, 617, 662, 787, 863, 907
MfeI CAATTG 1 cut(s) 167
MflI RGATCY 2 cut(s) 54, 237
MhlI GDGCHC 1 cut(s) 499
MlsI TGGCCA 1 cut(s) 679
MluCI AATT 3 cut(s) 167, 354, 404
MluNI TGGCCA 1 cut(s) 679
MlyI GAGTC 4 cut(s) 39, 284, 587, 879
MmeI TCCRAC 1 cut(s) 364
MnlI CCTC 8 cut(s) 71, 87, 115, 134, 287, 307, 665, 760
Mox20I TGGCCA 1 cut(s) 679
MscI TGGCCA 1 cut(s) 679
MseI TTAA 4 cut(s) 324, 353, 357, 533
Msp20I TGGCCA 1 cut(s) 679
MspI CCGG 2 cut(s) 801, 906
MspR9I CCNGG 1 cut(s) 801
MunI CAATTG 1 cut(s) 167
MwoI GCNNNNNNNGC 2 cut(s) 722, 883
NciI CCSGG 1 cut(s) 801
NdeI CATATG 1 cut(s) 414
NdeII GATC 6 cut(s) 54, 85, 237, 386, 892, 933
NlaIII CATG 4 cut(s) 182, 466, 485, 663
NlaIV GGNNCC 1 cut(s) 442
NmuCI GTSAC 1 cut(s) 511
NspI RCATGY 1 cut(s) 485
PacI TTAATTAA 1 cut(s) 357
PfeI GAWTC 3 cut(s) 255, 466, 665
PkrI GCNGC 1 cut(s) 232
PleI GAGTC 4 cut(s) 39, 284, 587, 878
PpsI GAGTC 4 cut(s) 39, 284, 587, 878
PshBI ATTAAT 1 cut(s) 357
Psp124BI GAGCTC 1 cut(s) 499
Psp1406I AACGTT 1 cut(s) 840
PspN4I GGNNCC 1 cut(s) 442
PspPI GGNCC 1 cut(s) 102
PsuI RGATCY 2 cut(s) 54, 237
RsaI GTAC 2 cut(s) 70, 738
RsaNI GTAC 2 cut(s) 69, 737
SacI GAGCTC 1 cut(s) 499
SaqAI TTAA 4 cut(s) 324, 353, 357, 533
SatI GCNGC 1 cut(s) 231
Sau3AI GATC 6 cut(s) 54, 85, 237, 386, 892, 933
Sau96I GGNCC 1 cut(s) 102
ScaI AGTACT 1 cut(s) 738
SchI GAGTC 4 cut(s) 39, 284, 587, 879
ScrFI CCNGG 1 cut(s) 801
SduI GDGCHC 1 cut(s) 499
SinI GGWCC 1 cut(s) 102
SmlI CTYRAG 1 cut(s) 554
SmoI CTYRAG 1 cut(s) 554
Sse9I AATT 3 cut(s) 167, 354, 404
SsiI CCGC 5 cut(s) 119, 231, 274, 716, 816
SspMI CTAG 1 cut(s) 740
SstI GAGCTC 1 cut(s) 499
StyD4I CCNGG 1 cut(s) 799
TaaI ACNGT 5 cut(s) 115, 190, 548, 625, 791
TaiI ACGT 3 cut(s) 570, 843, 931
TaqI TCGA 3 cut(s) 23, 225, 279
TasI AATT 3 cut(s) 167, 354, 404
TatI WGTACW 1 cut(s) 736
TauI GCSGC 1 cut(s) 233
TfiI GAWTC 3 cut(s) 255, 466, 665
Tru1I TTAA 4 cut(s) 324, 353, 357, 533
Tru9I TTAA 4 cut(s) 324, 353, 357, 533
TscAI CASTG 1 cut(s) 871
TseFI GTSAC 1 cut(s) 511
Tsp45I GTSAC 1 cut(s) 511
TspDTI ATGAA 1 cut(s) 576
TspRI CASTG 1 cut(s) 871
VpaK11BI GGWCC 1 cut(s) 102
VspI ATTAAT 1 cut(s) 357
XapI RAATTY 1 cut(s) 404
XceI RCATGY 1 cut(s) 485
XspI CTAG 1 cut(s) 740
ZrmI AGTACT 1 cut(s) 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.