Rh7AG095500

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0012340
Physical Location & Seq
Forward (+)
7297796 .. 7300635
2840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG095500.1

Sequence Viewer

Length: 948 bp
ATGTTTGAATCGGAAGCAAACCCAGAAACCCTTTTTGGATTCATGCATTTGAGTTGTAACCCATTATTGTGGATGTTTGAATGTGTGTGTGTGTATAGGTGGTGGTCGGCTGAAACCATTGCGGTGGTGACCGGAGGCAATAGGGGCATTGGATTTGAGATTACTAGGCAACTTGCGGCGCATGGAGTGACTGTTATACTTACATCCAGAGACCCCAATGTGGGACTTGAAGCGGCTAACGTCCTACAAGAAGGGGGTCTCAATGTGTTTTTTCATCAGCTGGATGTGTTGGAGCCAGTGTCCATCAAAGAGTTTTGTGACTGGTTGGTGGAAAACTATGGTGGTTTGGATATTCTGGTGAATAATGCAGCGGTTAATTACAATCAGGGGTCTGATAATTCTGTGGAGCATGCAGCTCAAGTGTGCTTTACGAATTATTATGGCACCAAAAATATGATTCAGGCTCTGATCCCCTTGATGAAGCATTCATCTGCCGGAGGTCGTATTGTTAATGTGAGCTCAAGATTGGGGAGACTAAATGGTAAACGAAATAAAATTGAAGATCAGAATTTGAGAGAACAACTTGCCAATACGGAAACGCTCACAGAGGAAATTATTGATGGAGCAGTAAACAGTTTTCTAAAACAAGTAGAAGAGGGCACATGGGAATCAGGTGGATGGCCTAAAACGTTTACTGACTACTCGGTATCAAAACTTGCGGTCAATACTTACACCAGGCTAATGGCAAAGATACTCTCTGATAGACCTGAAGACGAGAAGATCTATATCAACTGTTACTGCCCAGGTTGGGTAAAGACTGCTATGACAGGCTATGCTGGGAACATATCAGCTGAAGAAGGAGCTGACACTGCAGTTTGGTTGGCCTTGCTTCCAGATCAGGCAATAACAGGGAAATTTTTCGCTGAGAGACGTGAGATAAAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204
Pfam Domains
Protein Families
adh_short

Protein Analysis

315

Amino Acids

35.1

Weight (kDa)

4.96

Isoelectric Point (pI)

37.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 40 - 180 9.1e-29 short chain dehydrogenase
KR PF08659 41 - 156 2.7e-06 KR domain
Epimerase PF01370 42 - 174 4.6e-06 NAD dependent epimerase/dehydratase family
adh_short_C2 PF13561 47 - 177 4.4e-21 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012340)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51030
fragaria_vesca FvH4_5g09740 FvH4_5g09740 FvH4_5g09740
malus_domestica MD00G1129700.v1.1 MD14G1145700.v1.1
prunus_persica Prupe.5G140000_v2.0.a1
pyrus_communis pycom06g12030 pycom14g12070
rosa_chinensis RchiOBHm_Chr7g0188491
rosa_laevigata RLG00000004690
rosa_multiflora Rmu_sc0001576.1_g000006 Rmu_sc0016427.1_g000004
rosa_roxburghii Rroxscaffold_3G00266360
rosa_rugosa Rorug06G0490900
rosa_samantha Rh7AG095500 Rh7BG097200 Rh7DG097400
rosa_wichuraiana Rw7G008250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 443
AciI CCGC 5 cut(s) 122, 176, 233, 371, 719
AclI AACGTT 1 cut(s) 689
AclWI GGATC 1 cut(s) 463
AcsI RAATTY 2 cut(s) 568, 914
AcuI CTGAAG 2 cut(s) 789, 873
AfiI CCNNNNNNNGG 3 cut(s) 220, 221, 808
AgsI TTSAA 4 cut(s) 8, 80, 230, 560
AjiI CACGTC 1 cut(s) 932
AjnI CCWGG 2 cut(s) 734, 802
AjuI GAANNNNNNNTTGG 2 cut(s) 18, 50
AluBI AGCT 5 cut(s) 280, 416, 519, 851, 863
AluI AGCT 5 cut(s) 280, 416, 519, 851, 863
Alw21I GWGCWC 1 cut(s) 521
Alw26I GTCTC 4 cut(s) 204, 263, 526, 922
AlwI GGATC 1 cut(s) 463
AlwNI CAGNNNCTG 1 cut(s) 466
AoxI GGCC 2 cut(s) 680, 882
ApeKI GCWGC 2 cut(s) 368, 413
ApoI RAATTY 2 cut(s) 568, 914
Asp700I GAANNNNTTC 1 cut(s) 917
AspLEI GCGC 1 cut(s) 181
AsuHPI GGTGA 2 cut(s) 139, 370
BaeGI GKGCMC 1 cut(s) 662
BanI GGYRCC 1 cut(s) 443
BanII GRGCYC 1 cut(s) 521
BbsI GAAGAC 1 cut(s) 777
Bbv12I GWGCWC 1 cut(s) 521
BbvI GCAGC 2 cut(s) 380, 425
BccI CCATC 3 cut(s) 311, 614, 672
BciT130I CCWGG 2 cut(s) 736, 804
BcoDI GTCTC 4 cut(s) 204, 263, 526, 922
BfaI CTAG 1 cut(s) 165
BfmI CTRYAG 1 cut(s) 870
BglII AGATCT 1 cut(s) 780
BisI GCNGC 4 cut(s) 177, 234, 369, 414
BlsI GCNGC 4 cut(s) 178, 235, 370, 415
Bme1390I CCNGG 2 cut(s) 736, 804
BmgBI CACGTC 1 cut(s) 932
BmiI GGNNCC 2 cut(s) 294, 445
BmrFI CCNGG 2 cut(s) 736, 804
BpiI GAAGAC 1 cut(s) 777
BpuEI CTTGAG 2 cut(s) 402, 505
BsaBI GATNNNNATC 1 cut(s) 785
BsaI GGTCTC 2 cut(s) 204, 263
BsaJI CCNNGG 1 cut(s) 802
BsaWI WCCGGW 1 cut(s) 131
BsaXI ACNNNNNCTCC 4 cut(s) 177, 207, 284, 314
Bsc4I CCNNNNNNNGG 3 cut(s) 220, 221, 808
Bse1I ACTGG 2 cut(s) 296, 326
Bse3DI GCAATG 1 cut(s) 117
Bse8I GATNNNNATC 1 cut(s) 785
BseBI CCWGG 2 cut(s) 736, 804
BseDI CCNNGG 1 cut(s) 802
BseGI GGATG 4 cut(s) 78, 203, 289, 683
BseJI GATNNNNATC 1 cut(s) 785
BseLI CCNNNNNNNGG 3 cut(s) 220, 221, 808
BseMI GCAATG 1 cut(s) 117
BseMII CTCAG 1 cut(s) 915
BseNI ACTGG 2 cut(s) 296, 326
BseSI GKGCMC 1 cut(s) 662
BseXI GCAGC 2 cut(s) 380, 425
BseYI CCCAGC 1 cut(s) 836
BshFI GGCC 2 cut(s) 682, 884
BshNI GGYRCC 1 cut(s) 443
BsiHKAI GWGCWC 1 cut(s) 521
BsiSI CCGG 2 cut(s) 132, 495
BslFI GGGAC 1 cut(s) 237
BslI CCNNNNNNNGG 3 cut(s) 220, 221, 808
BsmAI GTCTC 4 cut(s) 204, 263, 526, 922
BsmBI CGTCTC 1 cut(s) 922
BsmFI GGGAC 1 cut(s) 237
BsmI GAATGC 1 cut(s) 484
BsnI GGCC 2 cut(s) 682, 884
Bso31I GGTCTC 2 cut(s) 204, 263
Bsp1286I GDGCHC 2 cut(s) 521, 662
Bsp143I GATC 4 cut(s) 468, 562, 780, 895
BspACI CCGC 5 cut(s) 122, 176, 233, 371, 719
BspANI GGCC 2 cut(s) 682, 884
BspCNI CTCAG 1 cut(s) 916
BspLI GGNNCC 2 cut(s) 294, 445
BspMAI CTGCAG 1 cut(s) 874
BspPI GGATC 1 cut(s) 463
BspT107I GGYRCC 1 cut(s) 443
BspTNI GGTCTC 2 cut(s) 204, 263
BsrDI GCAATG 1 cut(s) 117
BsrI ACTGG 2 cut(s) 296, 326
BssECI CCNNGG 1 cut(s) 802
BssMI GATC 4 cut(s) 468, 562, 780, 895
Bst2UI CCWGG 2 cut(s) 736, 804
Bst4CI ACNGT 3 cut(s) 193, 635, 794
Bst6I CTCTTC 1 cut(s) 648
BstC8I GCNNGC 1 cut(s) 411
BstDEI CTNAG 1 cut(s) 924
BstEII GGTNACC 1 cut(s) 127
BstF5I GGATG 4 cut(s) 78, 203, 289, 683
BstHHI GCGC 1 cut(s) 181
BstKTI GATC 4 cut(s) 471, 565, 783, 898
BstMAI GTCTC 4 cut(s) 204, 263, 526, 922
BstMBI GATC 4 cut(s) 468, 562, 780, 895
BstMWI GCNNNNNNNGC 2 cut(s) 144, 869
BstNI CCWGG 2 cut(s) 736, 804
BstNSI RCATGY 1 cut(s) 413
BstPI GGTNACC 1 cut(s) 127
BstSCI CCNGG 2 cut(s) 734, 802
BstSFI CTRYAG 1 cut(s) 870
BstSLI GKGCMC 1 cut(s) 662
BstV1I GCAGC 2 cut(s) 380, 425
BstV2I GAAGAC 1 cut(s) 777
BstX2I RGATCY 1 cut(s) 780
BstXI CCANNNNNNTGG 3 cut(s) 69, 124, 742
BstYI RGATCY 1 cut(s) 780
BsuRI GGCC 2 cut(s) 682, 884
BtrI CACGTC 1 cut(s) 932
BtsCI GGATG 4 cut(s) 78, 203, 289, 683
BtsI GCAGTG 1 cut(s) 867
BtsIMutI CAGTG 2 cut(s) 303, 867
Cac8I GCNNGC 1 cut(s) 411
CaiI CAGNNNCTG 1 cut(s) 466
CfoI GCGC 1 cut(s) 181
CviAII CATG 4 cut(s) 43, 182, 410, 663
DdeI CTNAG 1 cut(s) 924
DpnI GATC 4 cut(s) 470, 564, 782, 897
DpnII GATC 4 cut(s) 468, 562, 780, 895
Eam1104I CTCTTC 1 cut(s) 648
EarI CTCTTC 1 cut(s) 648
Ecl136II GAGCTC 1 cut(s) 519
Eco24I GRGCYC 1 cut(s) 521
Eco31I GGTCTC 2 cut(s) 204, 263
Eco53kI GAGCTC 1 cut(s) 519
Eco57I CTGAAG 2 cut(s) 789, 873
Eco91I GGTNACC 1 cut(s) 127
EcoICRI GAGCTC 1 cut(s) 519
EcoO65I GGTNACC 1 cut(s) 127
EcoRII CCWGG 2 cut(s) 734, 802
EcoT22I ATGCAT 1 cut(s) 48
EcoT38I GRGCYC 1 cut(s) 521
Esp3I CGTCTC 1 cut(s) 922
FaeI CATG 4 cut(s) 46, 185, 413, 666
FaqI GGGAC 1 cut(s) 237
FatI CATG 4 cut(s) 42, 181, 409, 662
Fnu4HI GCNGC 4 cut(s) 177, 234, 369, 414
FokI GGATG 4 cut(s) 85, 190, 296, 690
FriOI GRGCYC 1 cut(s) 521
Fsp4HI GCNGC 4 cut(s) 177, 234, 369, 414
FspBI CTAG 1 cut(s) 165
GlaI GCGC 1 cut(s) 180
GluI GCNGC 4 cut(s) 177, 234, 369, 414
GsaI CCCAGC 1 cut(s) 840
HaeIII GGCC 2 cut(s) 682, 884
HapII CCGG 2 cut(s) 132, 495
HhaI GCGC 1 cut(s) 181
Hin1II CATG 4 cut(s) 46, 185, 413, 666
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
HinfI GANTC 4 cut(s) 8, 39, 457, 668
HpaII CCGG 2 cut(s) 132, 495
HphI GGTGA 2 cut(s) 139, 370
Hpy166II GTNNAC 3 cut(s) 545, 631, 693
Hpy188I TCNGA 5 cut(s) 13, 394, 468, 567, 760
Hpy188III TCNNGA 3 cut(s) 207, 522, 893
Hpy8I GTNNAC 3 cut(s) 545, 631, 693
HpyAV CCTTC 2 cut(s) 245, 851
HpyCH4III ACNGT 3 cut(s) 193, 635, 794
HpyCH4IV ACGT 3 cut(s) 240, 689, 931
HpyCH4V TGCA 4 cut(s) 46, 368, 413, 872
HpyF10VI GCNNNNNNNGC 2 cut(s) 144, 869
HpyF3I CTNAG 1 cut(s) 924
HpySE526I ACGT 3 cut(s) 240, 689, 931
Hsp92II CATG 4 cut(s) 46, 185, 413, 666
HspAI GCGC 1 cut(s) 179
Kzo9I GATC 4 cut(s) 468, 562, 780, 895
LmnI GCTCC 4 cut(s) 292, 406, 623, 860
Lsp1109I GCAGC 2 cut(s) 380, 425
MaeI CTAG 1 cut(s) 165
MaeII ACGT 3 cut(s) 240, 689, 931
MaeIII GTNAC 5 cut(s) 56, 127, 187, 317, 794
MalI GATC 4 cut(s) 470, 564, 782, 897
MboI GATC 4 cut(s) 468, 562, 780, 895
MboII GAAGA 5 cut(s) 572, 665, 782, 790, 866
MflI RGATCY 1 cut(s) 780
MhlI GDGCHC 2 cut(s) 521, 662
MluCI AATT 7 cut(s) 376, 397, 433, 555, 568, 612, 914
MmeI TCCRAC 1 cut(s) 270
MnlI CCTC 4 cut(s) 128, 491, 601, 649
Mph1103I ATGCAT 1 cut(s) 48
MroXI GAANNNNTTC 1 cut(s) 917
MseI TTAA 2 cut(s) 375, 510
MslI CAYNNNNRTG 2 cut(s) 67, 122
MspA1I CMGCKG 3 cut(s) 280, 371, 851
MspI CCGG 2 cut(s) 132, 495
MspR9I CCNGG 2 cut(s) 736, 804
Mva1269I GAATGC 1 cut(s) 484
MvaI CCWGG 2 cut(s) 736, 804
MwoI GCNNNNNNNGC 2 cut(s) 144, 869
NdeII GATC 4 cut(s) 468, 562, 780, 895
NlaIII CATG 4 cut(s) 46, 185, 413, 666
NlaIV GGNNCC 2 cut(s) 294, 445
NmuCI GTSAC 3 cut(s) 127, 187, 317
NsiI ATGCAT 1 cut(s) 48
NspI RCATGY 1 cut(s) 413
PaeI GCATGC 1 cut(s) 413
PctI GAATGC 1 cut(s) 484
PdmI GAANNNNTTC 1 cut(s) 917
PfeI GAWTC 4 cut(s) 8, 39, 457, 668
PkrI GCNGC 4 cut(s) 178, 235, 370, 415
Psp124BI GAGCTC 1 cut(s) 521
Psp1406I AACGTT 1 cut(s) 689
Psp6I CCWGG 2 cut(s) 734, 802
PspEI GGTNACC 1 cut(s) 127
PspFI CCCAGC 1 cut(s) 836
PspGI CCWGG 2 cut(s) 734, 802
PspN4I GGNNCC 2 cut(s) 294, 445
PstI CTGCAG 1 cut(s) 874
PstNI CAGNNNCTG 1 cut(s) 466
PsuI RGATCY 1 cut(s) 780
PvuII CAGCTG 2 cut(s) 280, 851
RseI CAYNNNNRTG 2 cut(s) 67, 122
SacI GAGCTC 1 cut(s) 521
SaqAI TTAA 2 cut(s) 375, 510
SatI GCNGC 4 cut(s) 177, 234, 369, 414
Sau3AI GATC 4 cut(s) 468, 562, 780, 895
ScrFI CCNGG 2 cut(s) 736, 804
SduI GDGCHC 2 cut(s) 521, 662
SfcI CTRYAG 1 cut(s) 870
SmiMI CAYNNNNRTG 2 cut(s) 67, 122
SmlI CTYRAG 2 cut(s) 417, 520
SmoI CTYRAG 2 cut(s) 417, 520
SphI GCATGC 1 cut(s) 413
Sse9I AATT 7 cut(s) 376, 397, 433, 555, 568, 612, 914
SsiI CCGC 5 cut(s) 122, 176, 233, 371, 719
SspMI CTAG 1 cut(s) 165
SstI GAGCTC 1 cut(s) 521
StyD4I CCNGG 2 cut(s) 734, 802
TaaI ACNGT 3 cut(s) 193, 635, 794
TaiI ACGT 3 cut(s) 243, 692, 934
TasI AATT 7 cut(s) 376, 397, 433, 555, 568, 612, 914
TauI GCSGC 2 cut(s) 179, 236
TfiI GAWTC 4 cut(s) 8, 39, 457, 668
Tru1I TTAA 2 cut(s) 375, 510
Tru9I TTAA 2 cut(s) 375, 510
TscAI CASTG 2 cut(s) 303, 874
TseFI GTSAC 3 cut(s) 127, 187, 317
TseI GCWGC 2 cut(s) 368, 413
Tsp45I GTSAC 3 cut(s) 127, 187, 317
TspDTI ATGAA 4 cut(s) 31, 263, 477, 494
TspGWI ACGGA 1 cut(s) 608
TspRI CASTG 2 cut(s) 303, 874
XapI RAATTY 2 cut(s) 568, 914
XceI RCATGY 1 cut(s) 413
XmnI GAANNNNTTC 1 cut(s) 917
XspI CTAG 1 cut(s) 165
Zsp2I ATGCAT 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.