RLG00000004690

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0012340
Physical Location & Seq
Reverse (-)
61453522 .. 61455490
1969 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004690

Sequence Viewer

Length: 951 bp
ATGGGGAAAACTGAAAAGACTGAAAAGGCCAAAGAGAGAAGAGAAAAGCGACGCCAGGAGATCTCTCTTCTCAGAACCATCCCTTATTCCGATCACCAAAGGTGGTGGTCGGCTGAAACCATTGCGGTGGTGACCGGAGGCAATAGGGGCATTGGATTTGAGATTACTAGGCAACTTGCTGCGCATGGAGTGACTGTTATACTTACATCCAGAGACCCCAATGTGGGACTTGAAGCGGCTAAGGTCCTACAAGAAGGGGGTCTCAATGTGTTTTTTCATCAGCTGGATGTGTTGGAGCCGGTGTCCATCAAAGAGTTTTGTGACTGGTTGGTGGAAAACTATGGCGGTTTGGATATTCTGGTGAATAATGCAGCCGTTAATTACAATCAGGGGTCTGATAATTCTGTGGAGCATGCAGCTCAAGTGTGCTTTACCAATTATTATGGCACCAAAAATATGATTCAGGCTCTGATCCCGTTGATGAAGCATTCATCTGCCGGAGGTCGTATTGTTAATGTGAGCTCAAGATTGGGGAGACTAAATGGTAAACGAAATAAAATTGAAGATCAGAATTTGAGAGAACAACTTGCCAATACGGAAACGCTCACAGAGGAAATTATTGATGGAGCAGTAAACAGTTTTCTAAAACAAGTAGAAGAGGGCACATGGGAATCAGGTGGATGGCCTAAAACGTTTACTGACTACTCGGTATCAAAACTTGCAGTCAATACTTACACCAGGCTAATGGCAAAGATACTCTCTGATAGACCTGAAGACGAGAAGATCTATATCAACTGTTACTGCCCAGGTTGGGTAAAGACTGCTATGACAGGCTATGCTGGAAACATATCAGCTGAAGAAGGAGCTGACACTGCAGTTTGGTTGGCCTTGCTTCCAGATCAGGCAATAACAGGGAAATTTTTCGCTGAGAGACGTGAGATAAAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204
Pfam Domains
Protein Families
adh_short

Protein Analysis

317

Amino Acids

35.37

Weight (kDa)

6.05

Isoelectric Point (pI)

39.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 41 - 181 4.5e-29 short chain dehydrogenase
KR PF08659 42 - 157 2.3e-06 KR domain
Epimerase PF01370 43 - 175 4e-06 NAD dependent epimerase/dehydratase family
adh_short_C2 PF13561 48 - 178 2.4e-21 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012340)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51030
fragaria_vesca FvH4_5g09740 FvH4_5g09740 FvH4_5g09740
malus_domestica MD00G1129700.v1.1 MD14G1145700.v1.1
prunus_persica Prupe.5G140000_v2.0.a1
pyrus_communis pycom06g12030 pycom14g12070
rosa_chinensis RchiOBHm_Chr7g0188491
rosa_laevigata RLG00000004690
rosa_multiflora Rmu_sc0001576.1_g000006 Rmu_sc0016427.1_g000004
rosa_roxburghii Rroxscaffold_3G00266360
rosa_rugosa Rorug06G0490900
rosa_samantha Rh7AG095500 Rh7BG097200 Rh7DG097400
rosa_wichuraiana Rw7G008250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 183
AccB1I GGYRCC 1 cut(s) 446
AciI CCGC 3 cut(s) 125, 236, 345
AclI AACGTT 1 cut(s) 692
AclWI GGATC 1 cut(s) 466
AcsI RAATTY 2 cut(s) 571, 917
AcuI CTGAAG 2 cut(s) 792, 876
AcyI GRCGYC 1 cut(s) 52
AfiI CCNNNNNNNGG 3 cut(s) 223, 224, 811
AgsI TTSAA 2 cut(s) 233, 563
AjiI CACGTC 1 cut(s) 935
AjnI CCWGG 3 cut(s) 54, 737, 805
AluBI AGCT 5 cut(s) 283, 419, 522, 854, 866
AluI AGCT 5 cut(s) 283, 419, 522, 854, 866
Alw21I GWGCWC 1 cut(s) 524
Alw26I GTCTC 4 cut(s) 207, 266, 529, 925
AlwI GGATC 1 cut(s) 466
AlwNI CAGNNNCTG 1 cut(s) 469
AoxI GGCC 3 cut(s) 27, 683, 885
ApeKI GCWGC 3 cut(s) 179, 371, 416
ApoI RAATTY 2 cut(s) 571, 917
Asp700I GAANNNNTTC 1 cut(s) 920
AspLEI GCGC 1 cut(s) 184
AspS9I GGNCC 1 cut(s) 244
AsuHPI GGTGA 3 cut(s) 86, 142, 373
AvaII GGWCC 1 cut(s) 244
BaeGI GKGCMC 1 cut(s) 665
BanI GGYRCC 1 cut(s) 446
BanII GRGCYC 1 cut(s) 524
BbsI GAAGAC 1 cut(s) 780
Bbv12I GWGCWC 1 cut(s) 524
BbvI GCAGC 3 cut(s) 166, 383, 428
BccI CCATC 4 cut(s) 86, 314, 617, 675
BceAI ACGGC 1 cut(s) 359
BciT130I CCWGG 3 cut(s) 56, 739, 807
BcoDI GTCTC 4 cut(s) 207, 266, 529, 925
BfaI CTAG 1 cut(s) 168
BfmI CTRYAG 1 cut(s) 873
BglII AGATCT 2 cut(s) 60, 783
BisI GCNGC 4 cut(s) 180, 237, 372, 417
BlsI GCNGC 4 cut(s) 181, 238, 373, 418
Bme1390I CCNGG 3 cut(s) 56, 739, 807
Bme18I GGWCC 1 cut(s) 244
BmgBI CACGTC 1 cut(s) 935
BmgT120I GGNCC 1 cut(s) 244
BmiI GGNNCC 2 cut(s) 297, 448
BmrFI CCNGG 3 cut(s) 56, 739, 807
BpiI GAAGAC 1 cut(s) 780
Bpu10I CCTNAGC 1 cut(s) 240
BpuEI CTTGAG 2 cut(s) 405, 508
BsaBI GATNNNNATC 1 cut(s) 788
BsaHI GRCGYC 1 cut(s) 52
BsaI GGTCTC 2 cut(s) 207, 266
BsaJI CCNNGG 1 cut(s) 805
BsaWI WCCGGW 1 cut(s) 134
BsaXI ACNNNNNCTCC 4 cut(s) 180, 210, 287, 317
Bsc4I CCNNNNNNNGG 3 cut(s) 223, 224, 811
Bse118I RCCGGY 1 cut(s) 298
Bse1I ACTGG 1 cut(s) 329
Bse3DI GCAATG 1 cut(s) 120
Bse8I GATNNNNATC 1 cut(s) 788
BseBI CCWGG 3 cut(s) 56, 739, 807
BseDI CCNNGG 1 cut(s) 805
BseGI GGATG 4 cut(s) 78, 206, 292, 686
BseJI GATNNNNATC 1 cut(s) 788
BseLI CCNNNNNNNGG 3 cut(s) 223, 224, 811
BseMI GCAATG 1 cut(s) 120
BseMII CTCAG 2 cut(s) 85, 918
BseNI ACTGG 1 cut(s) 329
BseSI GKGCMC 1 cut(s) 665
BseXI GCAGC 3 cut(s) 166, 383, 428
BshFI GGCC 3 cut(s) 29, 685, 887
BshNI GGYRCC 1 cut(s) 446
BsiHKAI GWGCWC 1 cut(s) 524
BsiSI CCGG 3 cut(s) 135, 299, 498
BslFI GGGAC 1 cut(s) 240
BslI CCNNNNNNNGG 3 cut(s) 223, 224, 811
BsmAI GTCTC 4 cut(s) 207, 266, 529, 925
BsmBI CGTCTC 1 cut(s) 925
BsmFI GGGAC 1 cut(s) 240
BsmI GAATGC 1 cut(s) 487
BsnI GGCC 3 cut(s) 29, 685, 887
Bso31I GGTCTC 2 cut(s) 207, 266
Bsp1286I GDGCHC 2 cut(s) 524, 665
Bsp143I GATC 6 cut(s) 60, 91, 471, 565, 783, 898
BspACI CCGC 3 cut(s) 125, 236, 345
BspANI GGCC 3 cut(s) 29, 685, 887
BspCNI CTCAG 2 cut(s) 84, 919
BspLI GGNNCC 2 cut(s) 297, 448
BspMAI CTGCAG 1 cut(s) 877
BspPI GGATC 1 cut(s) 466
BspT107I GGYRCC 1 cut(s) 446
BspTNI GGTCTC 2 cut(s) 207, 266
BsrDI GCAATG 1 cut(s) 120
BsrFI RCCGGY 1 cut(s) 298
BsrI ACTGG 1 cut(s) 329
BssAI RCCGGY 1 cut(s) 298
BssECI CCNNGG 1 cut(s) 805
BssMI GATC 6 cut(s) 60, 91, 471, 565, 783, 898
BssNI GRCGYC 1 cut(s) 52
Bst2UI CCWGG 3 cut(s) 56, 739, 807
Bst4CI ACNGT 3 cut(s) 196, 638, 797
Bst6I CTCTTC 3 cut(s) 34, 72, 651
BstACI GRCGYC 1 cut(s) 52
BstC8I GCNNGC 1 cut(s) 414
BstDEI CTNAG 3 cut(s) 71, 240, 927
BstEII GGTNACC 1 cut(s) 130
BstF5I GGATG 4 cut(s) 78, 206, 292, 686
BstHHI GCGC 1 cut(s) 184
BstKTI GATC 6 cut(s) 63, 94, 474, 568, 786, 901
BstMAI GTCTC 4 cut(s) 207, 266, 529, 925
BstMBI GATC 6 cut(s) 60, 91, 471, 565, 783, 898
BstMWI GCNNNNNNNGC 2 cut(s) 147, 872
BstNI CCWGG 3 cut(s) 56, 739, 807
BstNSI RCATGY 1 cut(s) 416
BstPI GGTNACC 1 cut(s) 130
BstSCI CCNGG 3 cut(s) 54, 737, 805
BstSFI CTRYAG 1 cut(s) 873
BstSLI GKGCMC 1 cut(s) 665
BstV1I GCAGC 3 cut(s) 166, 383, 428
BstV2I GAAGAC 1 cut(s) 780
BstX2I RGATCY 2 cut(s) 60, 783
BstXI CCANNNNNNTGG 2 cut(s) 127, 745
BstYI RGATCY 2 cut(s) 60, 783
BsuRI GGCC 3 cut(s) 29, 685, 887
BtrI CACGTC 1 cut(s) 935
BtsCI GGATG 4 cut(s) 78, 206, 292, 686
BtsI GCAGTG 1 cut(s) 870
BtsIMutI CAGTG 1 cut(s) 870
Cac8I GCNNGC 1 cut(s) 414
CaiI CAGNNNCTG 1 cut(s) 469
CfoI GCGC 1 cut(s) 184
Cfr10I RCCGGY 1 cut(s) 298
Cfr13I GGNCC 1 cut(s) 244
CseI GACGC 1 cut(s) 60
CspCI CAANNNNNGTGG 2 cut(s) 86, 121
CviAII CATG 3 cut(s) 185, 413, 666
DdeI CTNAG 3 cut(s) 71, 240, 927
DpnI GATC 6 cut(s) 62, 93, 473, 567, 785, 900
DpnII GATC 6 cut(s) 60, 91, 471, 565, 783, 898
Eam1104I CTCTTC 3 cut(s) 34, 72, 651
EarI CTCTTC 3 cut(s) 34, 72, 651
Ecl136II GAGCTC 1 cut(s) 522
Eco24I GRGCYC 1 cut(s) 524
Eco31I GGTCTC 2 cut(s) 207, 266
Eco47I GGWCC 1 cut(s) 244
Eco53kI GAGCTC 1 cut(s) 522
Eco57I CTGAAG 2 cut(s) 792, 876
Eco91I GGTNACC 1 cut(s) 130
EcoICRI GAGCTC 1 cut(s) 522
EcoO109I RGGNCCY 1 cut(s) 244
EcoO65I GGTNACC 1 cut(s) 130
EcoRII CCWGG 3 cut(s) 54, 737, 805
EcoT38I GRGCYC 1 cut(s) 524
Esp3I CGTCTC 1 cut(s) 925
FaeI CATG 3 cut(s) 188, 416, 669
FaqI GGGAC 1 cut(s) 240
FatI CATG 3 cut(s) 184, 412, 665
Fnu4HI GCNGC 4 cut(s) 180, 237, 372, 417
FokI GGATG 4 cut(s) 65, 193, 299, 693
FriOI GRGCYC 1 cut(s) 524
Fsp4HI GCNGC 4 cut(s) 180, 237, 372, 417
FspBI CTAG 1 cut(s) 168
FspI TGCGCA 1 cut(s) 183
GlaI GCGC 1 cut(s) 183
GluI GCNGC 4 cut(s) 180, 237, 372, 417
HaeIII GGCC 3 cut(s) 29, 685, 887
HapII CCGG 3 cut(s) 135, 299, 498
HgaI GACGC 1 cut(s) 60
HhaI GCGC 1 cut(s) 184
Hin1I GRCGYC 1 cut(s) 52
Hin1II CATG 3 cut(s) 188, 416, 669
Hin6I GCGC 1 cut(s) 182
HinP1I GCGC 1 cut(s) 182
HinfI GANTC 2 cut(s) 460, 671
HpaII CCGG 3 cut(s) 135, 299, 498
HphI GGTGA 3 cut(s) 86, 142, 373
Hpy166II GTNNAC 3 cut(s) 548, 634, 696
Hpy188I TCNGA 6 cut(s) 74, 91, 397, 471, 570, 763
Hpy188III TCNNGA 3 cut(s) 210, 525, 896
Hpy8I GTNNAC 3 cut(s) 548, 634, 696
Hpy99I CGWCG 1 cut(s) 54
HpyAV CCTTC 2 cut(s) 248, 854
HpyCH4III ACNGT 3 cut(s) 196, 638, 797
HpyCH4IV ACGT 2 cut(s) 692, 934
HpyCH4V TGCA 4 cut(s) 371, 416, 722, 875
HpyF10VI GCNNNNNNNGC 2 cut(s) 147, 872
HpyF3I CTNAG 3 cut(s) 71, 240, 927
HpySE526I ACGT 2 cut(s) 692, 934
Hsp92I GRCGYC 1 cut(s) 52
Hsp92II CATG 3 cut(s) 188, 416, 669
HspAI GCGC 1 cut(s) 182
Kzo9I GATC 6 cut(s) 60, 91, 471, 565, 783, 898
LmnI GCTCC 4 cut(s) 295, 409, 626, 863
Lsp1109I GCAGC 3 cut(s) 166, 383, 428
MaeI CTAG 1 cut(s) 168
MaeII ACGT 2 cut(s) 692, 934
MaeIII GTNAC 4 cut(s) 130, 190, 320, 797
MalI GATC 6 cut(s) 62, 93, 473, 567, 785, 900
MboI GATC 6 cut(s) 60, 91, 471, 565, 783, 898
MboII GAAGA 7 cut(s) 51, 59, 575, 668, 785, 793, 869
MflI RGATCY 2 cut(s) 60, 783
MhlI GDGCHC 2 cut(s) 524, 665
MluCI AATT 7 cut(s) 379, 400, 436, 558, 571, 615, 917
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 4 cut(s) 131, 494, 604, 652
MroXI GAANNNNTTC 1 cut(s) 920
MseI TTAA 2 cut(s) 378, 513
MslI CAYNNNNRTG 1 cut(s) 125
MspA1I CMGCKG 2 cut(s) 283, 854
MspI CCGG 3 cut(s) 135, 299, 498
MspR9I CCNGG 3 cut(s) 56, 739, 807
Mva1269I GAATGC 1 cut(s) 487
MvaI CCWGG 3 cut(s) 56, 739, 807
MwoI GCNNNNNNNGC 2 cut(s) 147, 872
NdeII GATC 6 cut(s) 60, 91, 471, 565, 783, 898
NlaIII CATG 3 cut(s) 188, 416, 669
NlaIV GGNNCC 2 cut(s) 297, 448
NmuCI GTSAC 3 cut(s) 130, 190, 320
NsbI TGCGCA 1 cut(s) 183
NspI RCATGY 1 cut(s) 416
PaeI GCATGC 1 cut(s) 416
PctI GAATGC 1 cut(s) 487
PdmI GAANNNNTTC 1 cut(s) 920
PfeI GAWTC 2 cut(s) 460, 671
PkrI GCNGC 4 cut(s) 181, 238, 373, 418
PpuMI RGGWCCY 1 cut(s) 244
Psp124BI GAGCTC 1 cut(s) 524
Psp1406I AACGTT 1 cut(s) 692
Psp5II RGGWCCY 1 cut(s) 244
Psp6I CCWGG 3 cut(s) 54, 737, 805
PspEI GGTNACC 1 cut(s) 130
PspGI CCWGG 3 cut(s) 54, 737, 805
PspN4I GGNNCC 2 cut(s) 297, 448
PspPI GGNCC 1 cut(s) 244
PspPPI RGGWCCY 1 cut(s) 244
PstI CTGCAG 1 cut(s) 877
PstNI CAGNNNCTG 1 cut(s) 469
PsuI RGATCY 2 cut(s) 60, 783
PvuII CAGCTG 2 cut(s) 283, 854
RseI CAYNNNNRTG 1 cut(s) 125
SacI GAGCTC 1 cut(s) 524
SaqAI TTAA 2 cut(s) 378, 513
SatI GCNGC 4 cut(s) 180, 237, 372, 417
Sau3AI GATC 6 cut(s) 60, 91, 471, 565, 783, 898
Sau96I GGNCC 1 cut(s) 244
ScrFI CCNGG 3 cut(s) 56, 739, 807
SduI GDGCHC 2 cut(s) 524, 665
SfcI CTRYAG 1 cut(s) 873
SinI GGWCC 1 cut(s) 244
SmiMI CAYNNNNRTG 1 cut(s) 125
SmlI CTYRAG 2 cut(s) 420, 523
SmoI CTYRAG 2 cut(s) 420, 523
SphI GCATGC 1 cut(s) 416
Sse9I AATT 7 cut(s) 379, 400, 436, 558, 571, 615, 917
SsiI CCGC 3 cut(s) 125, 236, 345
SspMI CTAG 1 cut(s) 168
SstI GAGCTC 1 cut(s) 524
StyD4I CCNGG 3 cut(s) 54, 737, 805
TaaI ACNGT 3 cut(s) 196, 638, 797
TaiI ACGT 2 cut(s) 695, 937
TasI AATT 7 cut(s) 379, 400, 436, 558, 571, 615, 917
TauI GCSGC 1 cut(s) 239
TfiI GAWTC 2 cut(s) 460, 671
Tru1I TTAA 2 cut(s) 378, 513
Tru9I TTAA 2 cut(s) 378, 513
TscAI CASTG 1 cut(s) 877
TseFI GTSAC 3 cut(s) 130, 190, 320
TseI GCWGC 3 cut(s) 179, 371, 416
Tsp45I GTSAC 3 cut(s) 130, 190, 320
TspDTI ATGAA 3 cut(s) 266, 480, 497
TspGWI ACGGA 1 cut(s) 611
TspRI CASTG 1 cut(s) 877
VpaK11BI GGWCC 1 cut(s) 244
XapI RAATTY 2 cut(s) 571, 917
XceI RCATGY 1 cut(s) 416
XmnI GAANNNNTTC 1 cut(s) 920
XspI CTAG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.