FvH4_5g09740

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0012340
Physical Location & Seq
Reverse (-)
5596339 .. 5598651
2313 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g09740.t1

Sequence Viewer

Length: 951 bp
ATGGGGAAGACTGAAAAGACCGAAAAGGCCAAAGAGAGAAGAGAAAAGCGACGCCAGGAGATCTCTCTTCTCAGAACCATCCCTTATTCCGATCACCAAAGGTGGTGGTCGGCTGAAACCATTGCGGTGGTGACCGGAGGCAATAGGGGCATTGGATTTGAAATCACTAGGCAACTTGCGGCGCATGGATTGACTGTGATACTCACGTCCCGAGACCCTGAGGTGGGATGTGAAGCTGCTAAGGTGTTACAGGAAGGGGGTCTAAATGTGTATTTTCATCAGCTGGATGTGTTGGACCAAGTTTCCATCAAAGAGTTTTGTGACTGGTTGGTGGAAAACTATGGTGGTTTGGATATTCTGGTGAATAATGCAGCTGTTAATTTCAATCAGGGGTCTGATAATTCTGTGGAGCATGCAGCGCAAGTGTGCACTACGAATTATTATGGCACCAAGAACATGATCCAAGCGTTGATCCCCTTGATGAAGCATTCATCTGCCGGGGGTCGTATTGTTAATGTGAGCTCGAGATTGGGTAGACTAAATGGCAAACGAAATAGAATTGAAGATCTGAATTTGAGAGAACAACTTTCCAATGTGGAAACGCTCACAGAGGAAATTATTGATGGAGCAGTAGACAGTTTTCTAAAACAAGTAGAAGAGGGCACATGGGAATCAGGTGGTTGGCCCCAAACGTTTACTGACTACTCGGTATCAAAACTTGCTGTCAATACTTACACCAAGCTAATGGCAAAGATACTCTCTGATAGACCAGAAGGTCAGAAGATCTTTATCAACTGTTATTGCCCAGGTTGGGTAAAGACTGCTATGACGGGCTATGCTGGGAACATATCAGCTGAAGAAGGAGCTGACACTGCAGTTTGGTTGGCTTTGCTTCCAGATCAGGCAATAACGGGGAAATTTTTTGCTGAGAGACGTGAGATTAAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204
Pfam Domains
Protein Families
adh_short

Protein Analysis

317

Amino Acids

35.27

Weight (kDa)

5.85

Isoelectric Point (pI)

38.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 41 - 180 2.7e-30 short chain dehydrogenase
KR PF08659 42 - 158 3e-07 KR domain
Epimerase PF01370 43 - 175 6.1e-07 NAD dependent epimerase/dehydratase family
adh_short_C2 PF13561 48 - 178 1.3e-22 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012340)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51030
fragaria_vesca FvH4_5g09740 FvH4_5g09740 FvH4_5g09740
malus_domestica MD00G1129700.v1.1 MD14G1145700.v1.1
prunus_persica Prupe.5G140000_v2.0.a1
pyrus_communis pycom06g12030 pycom14g12070
rosa_chinensis RchiOBHm_Chr7g0188491
rosa_laevigata RLG00000004690
rosa_multiflora Rmu_sc0001576.1_g000006 Rmu_sc0016427.1_g000004
rosa_roxburghii Rroxscaffold_3G00266360
rosa_rugosa Rorug06G0490900
rosa_samantha Rh7AG095500 Rh7BG097200 Rh7DG097400
rosa_wichuraiana Rw7G008250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 774
AccB1I GGYRCC 1 cut(s) 446
AccI GTMKAC 2 cut(s) 535, 633
AciI CCGC 2 cut(s) 125, 179
AclI AACGTT 1 cut(s) 692
AclWI GGATC 2 cut(s) 454, 466
AcsI RAATTY 2 cut(s) 571, 917
AcuI CTGAAG 1 cut(s) 876
AcyI GRCGYC 1 cut(s) 52
AfiI CCNNNNNNNGG 3 cut(s) 223, 224, 811
AgsI TTSAA 3 cut(s) 161, 385, 563
AjiI CACGTC 2 cut(s) 207, 935
AjnI CCWGG 2 cut(s) 54, 805
AluBI AGCT 7 cut(s) 236, 283, 374, 522, 742, 854, 866
AluI AGCT 7 cut(s) 236, 283, 374, 522, 742, 854, 866
Alw21I GWGCWC 2 cut(s) 431, 524
Alw26I GTCTC 2 cut(s) 207, 925
Alw44I GTGCAC 1 cut(s) 427
AlwI GGATC 2 cut(s) 454, 466
Ama87I CYCGRG 2 cut(s) 210, 523
AoxI GGCC 2 cut(s) 27, 683
ApaLI GTGCAC 1 cut(s) 427
ApeKI GCWGC 3 cut(s) 236, 371, 416
ApoI RAATTY 2 cut(s) 571, 917
AspLEI GCGC 2 cut(s) 184, 421
AspS9I GGNCC 2 cut(s) 295, 684
AsuC2I CCSGG 1 cut(s) 499
AsuHPI GGTGA 3 cut(s) 86, 142, 373
AvaI CYCGRG 2 cut(s) 210, 523
AvaII GGWCC 1 cut(s) 295
AxyI CCTNAGG 1 cut(s) 219
BaeGI GKGCMC 2 cut(s) 431, 665
BaeI ACNNNNGTAYC 2 cut(s) 191, 224
BanI GGYRCC 1 cut(s) 446
BanII GRGCYC 1 cut(s) 524
BbsI GAAGAC 1 cut(s) 14
Bbv12I GWGCWC 2 cut(s) 431, 524
BbvI GCAGC 3 cut(s) 223, 383, 428
BccI CCATC 3 cut(s) 86, 314, 617
BciT130I CCWGG 2 cut(s) 56, 807
BcnI CCSGG 1 cut(s) 499
BcoDI GTCTC 2 cut(s) 207, 925
BfaI CTAG 1 cut(s) 168
BfmI CTRYAG 1 cut(s) 873
BglII AGATCT 3 cut(s) 60, 565, 783
BisI GCNGC 4 cut(s) 180, 237, 372, 417
BlsI GCNGC 4 cut(s) 181, 238, 373, 418
Bme1390I CCNGG 3 cut(s) 56, 499, 807
Bme18I GGWCC 1 cut(s) 295
BmeT110I CYCGRG 2 cut(s) 210, 523
BmgBI CACGTC 2 cut(s) 207, 935
BmgT120I GGNCC 2 cut(s) 295, 684
BmiI GGNNCC 2 cut(s) 448, 686
BmrFI CCNGG 3 cut(s) 56, 499, 807
BpiI GAAGAC 1 cut(s) 14
Bpu10I CCTNAGC 1 cut(s) 240
BpuMI CCSGG 1 cut(s) 499
BsaBI GATNNNNATC 1 cut(s) 788
BsaHI GRCGYC 1 cut(s) 52
BsaI GGTCTC 1 cut(s) 207
BsaJI CCNNGG 2 cut(s) 498, 805
BsaWI WCCGGW 1 cut(s) 134
Bsc4I CCNNNNNNNGG 3 cut(s) 223, 224, 811
Bse1I ACTGG 1 cut(s) 329
Bse21I CCTNAGG 1 cut(s) 219
Bse3DI GCAATG 1 cut(s) 120
Bse8I GATNNNNATC 1 cut(s) 788
BseBI CCWGG 2 cut(s) 56, 807
BseDI CCNNGG 2 cut(s) 498, 805
BseGI GGATG 3 cut(s) 78, 233, 292
BseJI GATNNNNATC 1 cut(s) 788
BseLI CCNNNNNNNGG 3 cut(s) 223, 224, 811
BseMI GCAATG 1 cut(s) 120
BseMII CTCAG 3 cut(s) 85, 210, 918
BseNI ACTGG 1 cut(s) 329
BseSI GKGCMC 2 cut(s) 431, 665
BseXI GCAGC 3 cut(s) 223, 383, 428
BseYI CCCAGC 1 cut(s) 839
BshFI GGCC 2 cut(s) 29, 685
BshNI GGYRCC 1 cut(s) 446
BsiHKAI GWGCWC 2 cut(s) 431, 524
BsiHKCI CYCGRG 2 cut(s) 210, 523
BsiSI CCGG 2 cut(s) 135, 498
BslFI GGGAC 1 cut(s) 193
BslI CCNNNNNNNGG 3 cut(s) 223, 224, 811
BsmAI GTCTC 2 cut(s) 207, 925
BsmBI CGTCTC 1 cut(s) 925
BsmFI GGGAC 1 cut(s) 193
BsmI GAATGC 1 cut(s) 487
BsnI GGCC 2 cut(s) 29, 685
Bso31I GGTCTC 1 cut(s) 207
BsoBI CYCGRG 2 cut(s) 210, 523
Bsp1286I GDGCHC 3 cut(s) 431, 524, 665
Bsp143I GATC 7 cut(s) 60, 91, 459, 471, 565, 783, 898
BspACI CCGC 2 cut(s) 125, 179
BspANI GGCC 2 cut(s) 29, 685
BspCNI CTCAG 3 cut(s) 84, 211, 919
BspLI GGNNCC 2 cut(s) 448, 686
BspMAI CTGCAG 1 cut(s) 877
BspPI GGATC 2 cut(s) 454, 466
BspT107I GGYRCC 1 cut(s) 446
BspTNI GGTCTC 1 cut(s) 207
BsrDI GCAATG 1 cut(s) 120
BsrI ACTGG 1 cut(s) 329
BssECI CCNNGG 2 cut(s) 498, 805
BssMI GATC 7 cut(s) 60, 91, 459, 471, 565, 783, 898
BssNI GRCGYC 1 cut(s) 52
Bst2UI CCWGG 2 cut(s) 56, 807
Bst4CI ACNGT 3 cut(s) 196, 638, 797
Bst6I CTCTTC 3 cut(s) 34, 72, 651
BstACI GRCGYC 1 cut(s) 52
BstC8I GCNNGC 1 cut(s) 414
BstDEI CTNAG 4 cut(s) 71, 219, 240, 927
BstEII GGTNACC 1 cut(s) 130
BstF5I GGATG 3 cut(s) 78, 233, 292
BstHHI GCGC 2 cut(s) 184, 421
BstKTI GATC 7 cut(s) 63, 94, 462, 474, 568, 786, 901
BstMAI GTCTC 2 cut(s) 207, 925
BstMBI GATC 7 cut(s) 60, 91, 459, 471, 565, 783, 898
BstMWI GCNNNNNNNGC 3 cut(s) 147, 418, 872
BstNI CCWGG 2 cut(s) 56, 807
BstNSI RCATGY 1 cut(s) 416
BstPI GGTNACC 1 cut(s) 130
BstSCI CCNGG 3 cut(s) 54, 497, 805
BstSFI CTRYAG 1 cut(s) 873
BstSLI GKGCMC 2 cut(s) 431, 665
BstV1I GCAGC 3 cut(s) 223, 383, 428
BstV2I GAAGAC 1 cut(s) 14
BstX2I RGATCY 3 cut(s) 60, 565, 783
BstXI CCANNNNNNTGG 2 cut(s) 127, 745
BstYI RGATCY 3 cut(s) 60, 565, 783
Bsu36I CCTNAGG 1 cut(s) 219
BsuRI GGCC 2 cut(s) 29, 685
BtrI CACGTC 2 cut(s) 207, 935
BtsCI GGATG 3 cut(s) 78, 233, 292
BtsI GCAGTG 1 cut(s) 870
BtsIMutI CAGTG 1 cut(s) 870
Cac8I GCNNGC 1 cut(s) 414
CfoI GCGC 2 cut(s) 184, 421
Cfr13I GGNCC 2 cut(s) 295, 684
CseI GACGC 1 cut(s) 60
CspCI CAANNNNNGTGG 2 cut(s) 86, 121
CviAII CATG 4 cut(s) 185, 413, 457, 666
DdeI CTNAG 4 cut(s) 71, 219, 240, 927
DpnI GATC 7 cut(s) 62, 93, 461, 473, 567, 785, 900
DpnII GATC 7 cut(s) 60, 91, 459, 471, 565, 783, 898
DrdI GACNNNNNNGTC 1 cut(s) 774
DseDI GACNNNNNNGTC 1 cut(s) 774
Eam1104I CTCTTC 3 cut(s) 34, 72, 651
EarI CTCTTC 3 cut(s) 34, 72, 651
Ecl136II GAGCTC 1 cut(s) 522
Eco24I GRGCYC 1 cut(s) 524
Eco31I GGTCTC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 295
Eco53kI GAGCTC 1 cut(s) 522
Eco57I CTGAAG 1 cut(s) 876
Eco81I CCTNAGG 1 cut(s) 219
Eco88I CYCGRG 2 cut(s) 210, 523
Eco91I GGTNACC 1 cut(s) 130
EcoICRI GAGCTC 1 cut(s) 522
EcoO65I GGTNACC 1 cut(s) 130
EcoRII CCWGG 2 cut(s) 54, 805
EcoT38I GRGCYC 1 cut(s) 524
Esp3I CGTCTC 1 cut(s) 925
FaeI CATG 4 cut(s) 188, 416, 460, 669
FaiI YATR 9 cut(s) 186, 342, 414, 444, 458, 667, 827, 837, 848
FaqI GGGAC 1 cut(s) 193
FatI CATG 4 cut(s) 184, 412, 456, 665
FblI GTMKAC 2 cut(s) 535, 633
Fnu4HI GCNGC 4 cut(s) 180, 237, 372, 417
FokI GGATG 3 cut(s) 65, 240, 299
FriOI GRGCYC 1 cut(s) 524
Fsp4HI GCNGC 4 cut(s) 180, 237, 372, 417
FspBI CTAG 1 cut(s) 168
GlaI GCGC 2 cut(s) 183, 420
GluI GCNGC 4 cut(s) 180, 237, 372, 417
GsaI CCCAGC 1 cut(s) 843
HaeIII GGCC 2 cut(s) 29, 685
HapII CCGG 2 cut(s) 135, 498
HgaI GACGC 1 cut(s) 60
HhaI GCGC 2 cut(s) 184, 421
Hin1I GRCGYC 1 cut(s) 52
Hin1II CATG 4 cut(s) 188, 416, 460, 669
Hin6I GCGC 2 cut(s) 182, 419
HinP1I GCGC 2 cut(s) 182, 419
HinfI GANTC 1 cut(s) 671
HpaII CCGG 2 cut(s) 135, 498
HphI GGTGA 3 cut(s) 86, 142, 373
Hpy166II GTNNAC 4 cut(s) 429, 536, 634, 696
Hpy188I TCNGA 6 cut(s) 74, 91, 397, 570, 763, 780
Hpy188III TCNNGA 3 cut(s) 210, 525, 896
Hpy8I GTNNAC 4 cut(s) 429, 536, 634, 696
Hpy99I CGWCG 1 cut(s) 54
HpyAV CCTTC 3 cut(s) 248, 767, 854
HpyCH4III ACNGT 3 cut(s) 196, 638, 797
HpyCH4IV ACGT 3 cut(s) 206, 692, 934
HpyCH4V TGCA 4 cut(s) 371, 416, 429, 875
HpyF10VI GCNNNNNNNGC 3 cut(s) 147, 418, 872
HpyF3I CTNAG 4 cut(s) 71, 219, 240, 927
HpySE526I ACGT 3 cut(s) 206, 692, 934
Hsp92I GRCGYC 1 cut(s) 52
Hsp92II CATG 4 cut(s) 188, 416, 460, 669
HspAI GCGC 2 cut(s) 182, 419
Kzo9I GATC 7 cut(s) 60, 91, 459, 471, 565, 783, 898
LmnI GCTCC 3 cut(s) 409, 626, 863
Lsp1109I GCAGC 3 cut(s) 223, 383, 428
MaeI CTAG 1 cut(s) 168
MaeII ACGT 3 cut(s) 206, 692, 934
MaeIII GTNAC 3 cut(s) 130, 246, 320
MalI GATC 7 cut(s) 62, 93, 461, 473, 567, 785, 900
MboI GATC 7 cut(s) 60, 91, 459, 471, 565, 783, 898
MboII GAAGA 7 cut(s) 19, 51, 59, 575, 668, 793, 869
MflI RGATCY 3 cut(s) 60, 565, 783
MhlI GDGCHC 3 cut(s) 431, 524, 665
MluCI AATT 7 cut(s) 379, 400, 436, 558, 571, 615, 917
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 4 cut(s) 131, 214, 604, 652
MseI TTAA 3 cut(s) 378, 513, 942
MslI CAYNNNNRTG 1 cut(s) 125
MspA1I CMGCKG 3 cut(s) 283, 374, 854
MspI CCGG 2 cut(s) 135, 498
MspR9I CCNGG 3 cut(s) 56, 499, 807
Mva1269I GAATGC 1 cut(s) 487
MvaI CCWGG 2 cut(s) 56, 807
MwoI GCNNNNNNNGC 3 cut(s) 147, 418, 872
NciI CCSGG 1 cut(s) 499
NdeII GATC 7 cut(s) 60, 91, 459, 471, 565, 783, 898
NlaIII CATG 4 cut(s) 188, 416, 460, 669
NlaIV GGNNCC 2 cut(s) 448, 686
NmuCI GTSAC 2 cut(s) 130, 320
NspI RCATGY 1 cut(s) 416
PaeI GCATGC 1 cut(s) 416
PaeR7I CTCGAG 1 cut(s) 523
PctI GAATGC 1 cut(s) 487
PfeI GAWTC 1 cut(s) 671
PkrI GCNGC 4 cut(s) 181, 238, 373, 418
Psp124BI GAGCTC 1 cut(s) 524
Psp1406I AACGTT 1 cut(s) 692
Psp6I CCWGG 2 cut(s) 54, 805
PspEI GGTNACC 1 cut(s) 130
PspFI CCCAGC 1 cut(s) 839
PspGI CCWGG 2 cut(s) 54, 805
PspN4I GGNNCC 2 cut(s) 448, 686
PspPI GGNCC 2 cut(s) 295, 684
PstI CTGCAG 1 cut(s) 877
PsuI RGATCY 3 cut(s) 60, 565, 783
PvuII CAGCTG 3 cut(s) 283, 374, 854
RseI CAYNNNNRTG 1 cut(s) 125
SacI GAGCTC 1 cut(s) 524
SaqAI TTAA 3 cut(s) 378, 513, 942
SatI GCNGC 4 cut(s) 180, 237, 372, 417
Sau3AI GATC 7 cut(s) 60, 91, 459, 471, 565, 783, 898
Sau96I GGNCC 2 cut(s) 295, 684
ScrFI CCNGG 3 cut(s) 56, 499, 807
SduI GDGCHC 3 cut(s) 431, 524, 665
SfcI CTRYAG 1 cut(s) 873
Sfr274I CTCGAG 1 cut(s) 523
SinI GGWCC 1 cut(s) 295
SlaI CTCGAG 1 cut(s) 523
SmiMI CAYNNNNRTG 1 cut(s) 125
SmlI CTYRAG 1 cut(s) 523
SmoI CTYRAG 1 cut(s) 523
SphI GCATGC 1 cut(s) 416
Sse9I AATT 7 cut(s) 379, 400, 436, 558, 571, 615, 917
SsiI CCGC 2 cut(s) 125, 179
SspMI CTAG 1 cut(s) 168
SstI GAGCTC 1 cut(s) 524
StyD4I CCNGG 3 cut(s) 54, 497, 805
TaaI ACNGT 3 cut(s) 196, 638, 797
TaiI ACGT 3 cut(s) 209, 695, 937
TaqI TCGA 1 cut(s) 524
TaqII GACCGA 1 cut(s) 35
TasI AATT 7 cut(s) 379, 400, 436, 558, 571, 615, 917
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 1 cut(s) 671
Tru1I TTAA 3 cut(s) 378, 513, 942
Tru9I TTAA 3 cut(s) 378, 513, 942
TscAI CASTG 1 cut(s) 877
TseFI GTSAC 2 cut(s) 130, 320
TseI GCWGC 3 cut(s) 236, 371, 416
Tsp45I GTSAC 2 cut(s) 130, 320
TspDTI ATGAA 3 cut(s) 266, 480, 497
TspRI CASTG 1 cut(s) 877
VneI GTGCAC 1 cut(s) 427
VpaK11BI GGWCC 1 cut(s) 295
XapI RAATTY 2 cut(s) 571, 917
XceI RCATGY 1 cut(s) 416
XhoI CTCGAG 1 cut(s) 523
XmiI GTMKAC 2 cut(s) 535, 633
XspI CTAG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.