pycom06g12030

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0012340
Physical Location & Seq
Forward (+)
17225933 .. 17228404
2472 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g12030.1

Sequence Viewer

Length: 951 bp
ATGGGAAAATCTGAAAAAACTGAAAGAGCTAAAGAAAGAAGGGAAAAGAGACGCCAGGAAATCTCCCTCCTCAGAACCATTCCTTATTCCGATCACCAGCGGTGGTGGTCTGCAGAGACTGTTGCGGTGGTGACTGGGGGTAACAGGGGGATTGGATTTGAGATTTCGAAGCAGCTTGCGGCACATGGAGTTACTGTTATACTCACATCCAGAGACCACAGTGTGGGGCTTGAAGCGGCTAAGGTCTTCCAAGAAGGTGGTCTCAATGTGTTTTGCCATCAGCTTGATGTGCTAGACACGGCGTCCATCACTGAGTTTTGTGACTGGTTGAAAGAAAACTATGGTGGGTTGGATATTCTGATAAACAATGCAGCTGTTAATTTCAATCAGGGTTCTGATAATACTGTTGAGTATGCCTCTCAGGTTATTACAACAAATTATTATGGCACCAAAAACATGATTCAAGCAATAATCCCCTTGATGAAACCTTCAGCAGCTGGAGCTCGTATTGTTAATGTGAGCTCAAGATTGGGTAGAATAAATGGCAAGCGGAATAAAATTGATGATGTGATTTTGAGAGAGAAATTTAGCAATTTGGACACAGTCACTGAGGAACTGATCGATCAAACAGTTTCCAGTTTCCTACAACAAGTACAAGATGGCACTTGGGAATCAGGTGGGTGGCCTAAAACGTTCACTGACTACTCAGTATCAAAACTTGCAGTCAACACTTACACCAGGCTGGTGGCGAAGATGCTCTCTGACAGACCAGAAGGCCAGAAAATTTATATCAACTGTTACTGCCCAGGTTGGGTGAAGACTGCTATGACAGGTTATGCTGGGAATATATCAGCCGAAGAAGGAGCTGACACTGCAGTTTGGCTTGCCTTGCTTCCGGACCTGGCAATAACGGGGAAGTTTTTTGCTGAAAGACGTGAGATAAGCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204
Pfam Domains
Protein Families
adh_short

Protein Analysis

317

Amino Acids

35.18

Weight (kDa)

6.47

Isoelectric Point (pI)

36.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 41 - 181 4.1e-29 short chain dehydrogenase
KR PF08659 42 - 157 8.3e-08 KR domain
Epimerase PF01370 43 - 175 2e-06 NAD dependent epimerase/dehydratase family
adh_short_C2 PF13561 48 - 180 1.1e-21 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012340)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51030
fragaria_vesca FvH4_5g09740 FvH4_5g09740 FvH4_5g09740
malus_domestica MD00G1129700.v1.1 MD14G1145700.v1.1
prunus_persica Prupe.5G140000_v2.0.a1
pyrus_communis pycom06g12030 pycom14g12070
rosa_chinensis RchiOBHm_Chr7g0188491
rosa_laevigata RLG00000004690
rosa_multiflora Rmu_sc0001576.1_g000006 Rmu_sc0016427.1_g000004
rosa_roxburghii Rroxscaffold_3G00266360
rosa_rugosa Rorug06G0490900
rosa_samantha Rh7AG095500 Rh7BG097200 Rh7DG097400
rosa_wichuraiana Rw7G008250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 446
AccB7I CCANNNNNTGG 1 cut(s) 223
AccIII TCCGGA 1 cut(s) 895
AciI CCGC 5 cut(s) 100, 125, 179, 236, 550
AclI AACGTT 1 cut(s) 692
AcsI RAATTY 2 cut(s) 584, 783
AcuI CTGAAG 1 cut(s) 474
AcyI GRCGYC 2 cut(s) 52, 302
AdeI CACNNNGTG 1 cut(s) 223
AfaI GTAC 1 cut(s) 654
AfiI CCNNNNNNNGG 2 cut(s) 223, 811
AgsI TTSAA 4 cut(s) 233, 331, 385, 464
AhdI GACNNNNNGTC 1 cut(s) 301
AjiI CACGTC 1 cut(s) 935
AjnI CCWGG 4 cut(s) 54, 737, 805, 900
AluBI AGCT 9 cut(s) 29, 175, 283, 374, 497, 503, 522, 866, 945
AluI AGCT 9 cut(s) 29, 175, 283, 374, 497, 503, 522, 866, 945
Alw21I GWGCWC 2 cut(s) 505, 524
Alw26I GTCTC 4 cut(s) 43, 110, 207, 266
AlwNI CAGNNNCTG 3 cut(s) 119, 497, 608
Aor13HI TCCGGA 1 cut(s) 895
AoxI GGCC 2 cut(s) 683, 775
ApeKI GCWGC 3 cut(s) 172, 371, 494
ApoI RAATTY 2 cut(s) 584, 783
AspS9I GGNCC 1 cut(s) 898
AsuHPI GGTGA 3 cut(s) 86, 142, 826
AsuII TTCGAA 1 cut(s) 167
AvaII GGWCC 1 cut(s) 898
BanI GGYRCC 1 cut(s) 446
BanII GRGCYC 2 cut(s) 505, 524
BbsI GAAGAC 2 cut(s) 238, 824
Bbv12I GWGCWC 2 cut(s) 505, 524
BbvI GCAGC 3 cut(s) 184, 383, 506
BccI CCATC 3 cut(s) 285, 314, 653
BceAI ACGGC 1 cut(s) 315
BciT130I CCWGG 4 cut(s) 56, 739, 807, 902
BcoDI GTCTC 4 cut(s) 43, 110, 207, 266
BfaI CTAG 1 cut(s) 293
BfmI CTRYAG 2 cut(s) 111, 873
BisI GCNGC 5 cut(s) 173, 180, 237, 372, 495
BlsI GCNGC 5 cut(s) 174, 181, 238, 373, 496
Bme1390I CCNGG 4 cut(s) 56, 739, 807, 902
Bme18I GGWCC 1 cut(s) 898
BmeRI GACNNNNNGTC 1 cut(s) 301
BmgBI CACGTC 1 cut(s) 935
BmgT120I GGNCC 1 cut(s) 898
BmiI GGNNCC 1 cut(s) 448
BmrFI CCNGG 4 cut(s) 56, 739, 807, 902
BmrI ACTGGG 1 cut(s) 144
BmsI GCATC 1 cut(s) 744
BmuI ACTGGG 1 cut(s) 144
BpiI GAAGAC 2 cut(s) 238, 824
BplI GAGNNNNNCTC 2 cut(s) 401, 433
BpmI CTGGAG 1 cut(s) 519
Bpu10I CCTNAGC 1 cut(s) 240
Bpu14I TTCGAA 1 cut(s) 167
BpuEI CTTGAG 1 cut(s) 508
Bsa29I ATCGAT 1 cut(s) 621
BsaHI GRCGYC 2 cut(s) 52, 302
BsaI GGTCTC 2 cut(s) 207, 266
BsaJI CCNNGG 1 cut(s) 805
BsaWI WCCGGW 1 cut(s) 895
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
Bsc4I CCNNNNNNNGG 2 cut(s) 223, 811
Bse1I ACTGG 3 cut(s) 139, 329, 636
BseAI TCCGGA 1 cut(s) 895
BseBI CCWGG 4 cut(s) 56, 739, 807, 902
BseCI ATCGAT 1 cut(s) 621
BseDI CCNNGG 1 cut(s) 805
BseGI GGATG 1 cut(s) 206
BseLI CCNNNNNNNGG 2 cut(s) 223, 811
BseMII CTCAG 5 cut(s) 85, 303, 434, 600, 720
BseNI ACTGG 3 cut(s) 139, 329, 636
BseRI GAGGAG 1 cut(s) 59
BseXI GCAGC 3 cut(s) 184, 383, 506
BseYI CCCAGC 1 cut(s) 839
BshFI GGCC 2 cut(s) 685, 777
BshNI GGYRCC 1 cut(s) 446
BshVI ATCGAT 1 cut(s) 621
BsiHKAI GWGCWC 2 cut(s) 505, 524
BsiSI CCGG 1 cut(s) 896
BslI CCNNNNNNNGG 2 cut(s) 223, 811
BsmAI GTCTC 4 cut(s) 43, 110, 207, 266
BsmBI CGTCTC 1 cut(s) 43
BsnI GGCC 2 cut(s) 685, 777
Bso31I GGTCTC 2 cut(s) 207, 266
Bsp119I TTCGAA 1 cut(s) 167
Bsp1286I GDGCHC 2 cut(s) 505, 524
Bsp13I TCCGGA 1 cut(s) 895
Bsp143I GATC 3 cut(s) 91, 618, 622
BspACI CCGC 5 cut(s) 100, 125, 179, 236, 550
BspANI GGCC 2 cut(s) 685, 777
BspCNI CTCAG 5 cut(s) 84, 304, 433, 601, 719
BspDI ATCGAT 1 cut(s) 621
BspEI TCCGGA 1 cut(s) 895
BspLI GGNNCC 1 cut(s) 448
BspMAI CTGCAG 2 cut(s) 115, 877
BspT104I TTCGAA 1 cut(s) 167
BspT107I GGYRCC 1 cut(s) 446
BspTNI GGTCTC 2 cut(s) 207, 266
BsrI ACTGG 3 cut(s) 139, 329, 636
BssECI CCNNGG 1 cut(s) 805
BssMI GATC 3 cut(s) 91, 618, 622
BssNI GRCGYC 2 cut(s) 52, 302
Bst2UI CCWGG 4 cut(s) 56, 739, 807, 902
Bst4CI ACNGT 7 cut(s) 121, 196, 221, 406, 604, 631, 797
BstACI GRCGYC 2 cut(s) 52, 302
BstBI TTCGAA 1 cut(s) 167
BstC8I GCNNGC 3 cut(s) 177, 548, 885
BstDEI CTNAG 6 cut(s) 71, 240, 312, 420, 609, 706
BstF5I GGATG 1 cut(s) 206
BstKTI GATC 3 cut(s) 94, 621, 625
BstMAI GTCTC 4 cut(s) 43, 110, 207, 266
BstMBI GATC 3 cut(s) 91, 618, 622
BstMWI GCNNNNNNNGC 4 cut(s) 289, 500, 872, 889
BstNI CCWGG 4 cut(s) 56, 739, 807, 902
BstSCI CCNGG 4 cut(s) 54, 737, 805, 900
BstSFI CTRYAG 2 cut(s) 111, 873
BstV1I GCAGC 3 cut(s) 184, 383, 506
BstV2I GAAGAC 2 cut(s) 238, 824
BstXI CCANNNNNNTGG 2 cut(s) 257, 745
Bsu15I ATCGAT 1 cut(s) 621
BsuRI GGCC 2 cut(s) 685, 777
BsuTUI ATCGAT 1 cut(s) 621
BtrI CACGTC 1 cut(s) 935
BtsCI GGATG 1 cut(s) 206
BtsI GCAGTG 1 cut(s) 870
BtsIMutI CAGTG 5 cut(s) 226, 309, 606, 696, 870
Cac8I GCNNGC 3 cut(s) 177, 548, 885
CaiI CAGNNNCTG 3 cut(s) 119, 497, 608
Cfr13I GGNCC 1 cut(s) 898
ClaI ATCGAT 1 cut(s) 621
CseI GACGC 2 cut(s) 60, 291
Csp6I GTAC 1 cut(s) 653
CviAII CATG 2 cut(s) 185, 457
CviQI GTAC 1 cut(s) 653
DdeI CTNAG 6 cut(s) 71, 240, 312, 420, 609, 706
DpnI GATC 3 cut(s) 93, 620, 624
DpnII GATC 3 cut(s) 91, 618, 622
DraIII CACNNNGTG 1 cut(s) 223
DriI GACNNNNNGTC 1 cut(s) 301
Eam1105I GACNNNNNGTC 1 cut(s) 301
Ecl136II GAGCTC 2 cut(s) 503, 522
Eco24I GRGCYC 2 cut(s) 505, 524
Eco31I GGTCTC 2 cut(s) 207, 266
Eco47I GGWCC 1 cut(s) 898
Eco53kI GAGCTC 2 cut(s) 503, 522
Eco57I CTGAAG 1 cut(s) 474
EcoICRI GAGCTC 2 cut(s) 503, 522
EcoRII CCWGG 4 cut(s) 54, 737, 805, 900
EcoT38I GRGCYC 2 cut(s) 505, 524
Esp3I CGTCTC 1 cut(s) 43
FaeI CATG 2 cut(s) 188, 460
FatI CATG 2 cut(s) 184, 456
Fnu4HI GCNGC 5 cut(s) 173, 180, 237, 372, 495
FokI GGATG 1 cut(s) 193
FriOI GRGCYC 2 cut(s) 505, 524
Fsp4HI GCNGC 5 cut(s) 173, 180, 237, 372, 495
FspBI CTAG 1 cut(s) 293
GluI GCNGC 5 cut(s) 173, 180, 237, 372, 495
GsaI CCCAGC 1 cut(s) 843
GsuI CTGGAG 1 cut(s) 519
HaeIII GGCC 2 cut(s) 685, 777
HapII CCGG 1 cut(s) 896
HgaI GACGC 2 cut(s) 60, 291
Hin1I GRCGYC 2 cut(s) 52, 302
Hin1II CATG 2 cut(s) 188, 460
HincII GTYRAC 1 cut(s) 727
HindII GTYRAC 1 cut(s) 727
HindIII AAGCTT 1 cut(s) 943
HinfI GANTC 2 cut(s) 460, 671
HpaII CCGG 1 cut(s) 896
HphI GGTGA 3 cut(s) 86, 142, 826
Hpy166II GTNNAC 2 cut(s) 696, 727
Hpy188I TCNGA 6 cut(s) 13, 74, 91, 360, 397, 763
Hpy188III TCNNGA 3 cut(s) 210, 525, 896
Hpy8I GTNNAC 2 cut(s) 696, 727
HpyAV CCTTC 5 cut(s) 33, 248, 498, 767, 854
HpyCH4III ACNGT 7 cut(s) 121, 196, 221, 406, 604, 631, 797
HpyCH4IV ACGT 2 cut(s) 692, 934
HpyCH4V TGCA 4 cut(s) 113, 371, 722, 875
HpyF10VI GCNNNNNNNGC 4 cut(s) 289, 500, 872, 889
HpyF3I CTNAG 6 cut(s) 71, 240, 312, 420, 609, 706
HpySE526I ACGT 2 cut(s) 692, 934
Hsp92I GRCGYC 2 cut(s) 52, 302
Hsp92II CATG 2 cut(s) 188, 460
Kpn2I TCCGGA 1 cut(s) 895
Kzo9I GATC 3 cut(s) 91, 618, 622
LmnI GCTCC 2 cut(s) 500, 863
Lsp1109I GCAGC 3 cut(s) 184, 383, 506
LweI GCATC 1 cut(s) 744
MaeI CTAG 1 cut(s) 293
MaeII ACGT 2 cut(s) 692, 934
MaeIII GTNAC 6 cut(s) 130, 140, 190, 320, 604, 797
MalI GATC 3 cut(s) 93, 620, 624
MboI GATC 3 cut(s) 91, 618, 622
MboII GAAGA 4 cut(s) 238, 763, 829, 869
MhlI GDGCHC 2 cut(s) 505, 524
MluCI AATT 6 cut(s) 379, 436, 558, 584, 592, 783
MmeI TCCRAC 1 cut(s) 330
MnlI CCTC 4 cut(s) 77, 80, 427, 604
MroI TCCGGA 1 cut(s) 895
MseI TTAA 2 cut(s) 378, 513
MspA1I CMGCKG 3 cut(s) 100, 374, 497
MspI CCGG 1 cut(s) 896
MspR9I CCNGG 4 cut(s) 56, 739, 807, 902
MvaI CCWGG 4 cut(s) 56, 739, 807, 902
MwoI GCNNNNNNNGC 4 cut(s) 289, 500, 872, 889
NdeII GATC 3 cut(s) 91, 618, 622
NlaIII CATG 2 cut(s) 188, 460
NlaIV GGNNCC 1 cut(s) 448
NmuCI GTSAC 3 cut(s) 130, 320, 604
NspV TTCGAA 1 cut(s) 167
PfeI GAWTC 2 cut(s) 460, 671
PflFI GACNNNGTC 1 cut(s) 602
PflMI CCANNNNNTGG 1 cut(s) 223
PkrI GCNGC 5 cut(s) 174, 181, 238, 373, 496
Psp124BI GAGCTC 2 cut(s) 505, 524
Psp1406I AACGTT 1 cut(s) 692
Psp6I CCWGG 4 cut(s) 54, 737, 805, 900
PspFI CCCAGC 1 cut(s) 839
PspGI CCWGG 4 cut(s) 54, 737, 805, 900
PspN4I GGNNCC 1 cut(s) 448
PspPI GGNCC 1 cut(s) 898
PstI CTGCAG 2 cut(s) 115, 877
PstNI CAGNNNCTG 3 cut(s) 119, 497, 608
PsyI GACNNNGTC 1 cut(s) 602
PvuII CAGCTG 2 cut(s) 374, 497
RsaI GTAC 1 cut(s) 654
RsaNI GTAC 1 cut(s) 653
SacI GAGCTC 2 cut(s) 505, 524
SaqAI TTAA 2 cut(s) 378, 513
SatI GCNGC 5 cut(s) 173, 180, 237, 372, 495
Sau3AI GATC 3 cut(s) 91, 618, 622
Sau96I GGNCC 1 cut(s) 898
ScrFI CCNGG 4 cut(s) 56, 739, 807, 902
SduI GDGCHC 2 cut(s) 505, 524
SfaNI GCATC 1 cut(s) 744
SfcI CTRYAG 2 cut(s) 111, 873
SfuI TTCGAA 1 cut(s) 167
SinI GGWCC 1 cut(s) 898
SmlI CTYRAG 1 cut(s) 523
SmoI CTYRAG 1 cut(s) 523
Sse9I AATT 6 cut(s) 379, 436, 558, 584, 592, 783
SsiI CCGC 5 cut(s) 100, 125, 179, 236, 550
SspMI CTAG 1 cut(s) 293
SstI GAGCTC 2 cut(s) 505, 524
StyD4I CCNGG 4 cut(s) 54, 737, 805, 900
TaaI ACNGT 7 cut(s) 121, 196, 221, 406, 604, 631, 797
TaiI ACGT 2 cut(s) 695, 937
TaqI TCGA 2 cut(s) 167, 621
TasI AATT 6 cut(s) 379, 436, 558, 584, 592, 783
TatI WGTACW 1 cut(s) 652
TauI GCSGC 2 cut(s) 182, 239
TfiI GAWTC 2 cut(s) 460, 671
Tru1I TTAA 2 cut(s) 378, 513
Tru9I TTAA 2 cut(s) 378, 513
TscAI CASTG 5 cut(s) 226, 316, 613, 703, 877
TseFI GTSAC 3 cut(s) 130, 320, 604
TseI GCWGC 3 cut(s) 172, 371, 494
Tsp45I GTSAC 3 cut(s) 130, 320, 604
TspDTI ATGAA 1 cut(s) 497
TspRI CASTG 5 cut(s) 226, 316, 613, 703, 877
Tth111I GACNNNGTC 1 cut(s) 602
Van91I CCANNNNNTGG 1 cut(s) 223
VpaK11BI GGWCC 1 cut(s) 898
XapI RAATTY 2 cut(s) 584, 783
XspI CTAG 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.