Prupe.5G140000_v2.0.a1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0012340
Physical Location & Seq
Forward (+)
13083273 .. 13086060
2788 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G140000.1

Sequence Viewer

Length: 951 bp
ATGGGAAAATCTGACAAAGCTGAAAGGGCCAAAGAGAGAAGAGAGAAGAGACTCCAAGAAATATCACTTCTCAGAACCATTCCTTATTCTGATCACCAGAGGTGGTGGTCAGCAGAGACCGTTGCAGTGGTTACTGGGGGCAATAGGGGGATTGGGTTTGAGATTTCAAGGCAGCTTGCGGCACATGGGGTGACTGTTATTCTCACATCCAGAGACCACAGTGTGGGGCTTGAAGCAGCTAAGGTCTTCCAAGAGGGTGGTCTGAATGTGTTTTGCCATCAGCTCGATGTGTTAGACACTTTGTCCATCAACGAGTTTTGTGATTGGTTGAAACAAAATTATGGTGGCTTGGATATCCTGATAAATAATGCAGCTGTTAATTTCAATCAAGGGTCTGATAATTCTGTCGAGTATGCCTCTCAGGTCATTACTACAAATTATTATGGCATCAAAAATATGATCCAAGCTATGATCCCTTTGATGAAACATTCAGCTCATGGAGGTCGAATTGTTAATGTGAGCTCCAGATTGGGTAGAACAAATGGCAAACGAAATAAACTTGAAGATGCGAATTTGAGAGAGAAACTTAGCAATATTGACACGCTCACAGAAGAAATGATTGATCAAACAGTTTCGACTTTTCTACAACAAGTACAAGAGGGCACTTGGGAATCAGGTGGGTGGCCTAAAACGTTCACTGACTACTCAATATCAAAGCTTGCAGTCAACACTTATACCAGGCTAATGGCGAGGATATTTTCAGAGAGACCAGAGGGTGAGAAAATTTATATCAACTGTTACTGCCCAGGTTGGGTCAAGACTGCAATGACAGGTTATGCTGGGAATATTTCAGCTGAAGACGGAGCTGACACTGCAGTCTGGCTTGCCTTGCTTCCAGACCAAGCAGTAACAGGGAAATTTTTTGCTGAGAGACGGGAGATAAGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204
Pfam Domains
Protein Families
adh_short

Protein Analysis

317

Amino Acids

35.37

Weight (kDa)

6.34

Isoelectric Point (pI)

33.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012340)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51030
fragaria_vesca FvH4_5g09740 FvH4_5g09740 FvH4_5g09740
malus_domestica MD00G1129700.v1.1 MD14G1145700.v1.1
prunus_persica Prupe.5G140000_v2.0.a1
pyrus_communis pycom06g12030 pycom14g12070
rosa_chinensis RchiOBHm_Chr7g0188491
rosa_laevigata RLG00000004690
rosa_multiflora Rmu_sc0001576.1_g000006 Rmu_sc0016427.1_g000004
rosa_roxburghii Rroxscaffold_3G00266360
rosa_rugosa Rorug06G0490900
rosa_samantha Rh7AG095500 Rh7BG097200 Rh7DG097400
rosa_wichuraiana Rw7G008250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 875
AccB7I CCANNNNNTGG 1 cut(s) 223
AciI CCGC 1 cut(s) 179
AclI AACGTT 1 cut(s) 692
AclWI GGATC 2 cut(s) 454, 466
AcsI RAATTY 3 cut(s) 571, 783, 917
AcuI CTGAAG 1 cut(s) 876
AdeI CACNNNGTG 1 cut(s) 223
AfaI GTAC 1 cut(s) 654
AfiI CCNNNNNNNGG 2 cut(s) 223, 811
AgsI TTSAA 5 cut(s) 168, 233, 331, 385, 563
AhdI GACNNNNNGTC 1 cut(s) 301
AjnI CCWGG 2 cut(s) 737, 805
Alw21I GWGCWC 1 cut(s) 524
Alw26I GTCTC 5 cut(s) 43, 110, 207, 760, 925
AlwI GGATC 2 cut(s) 454, 466
AoxI GGCC 2 cut(s) 27, 683
ApeKI GCWGC 3 cut(s) 172, 236, 371
ApoI RAATTY 3 cut(s) 571, 783, 917
AspS9I GGNCC 1 cut(s) 27
AsuHPI GGTGA 3 cut(s) 86, 202, 788
BaeGI GKGCMC 1 cut(s) 665
BanII GRGCYC 1 cut(s) 524
BbsI GAAGAC 2 cut(s) 238, 864
Bbv12I GWGCWC 1 cut(s) 524
BbvI GCAGC 3 cut(s) 184, 248, 383
BccI CCATC 2 cut(s) 285, 314
BciT130I CCWGG 2 cut(s) 739, 807
BclI TGATCA 2 cut(s) 91, 622
BcoDI GTCTC 5 cut(s) 43, 110, 207, 760, 925
BfmI CTRYAG 1 cut(s) 873
BisI GCNGC 4 cut(s) 173, 180, 237, 372
BlsI GCNGC 4 cut(s) 174, 181, 238, 373
Bme1390I CCNGG 2 cut(s) 739, 807
BmeRI GACNNNNNGTC 1 cut(s) 301
BmgT120I GGNCC 1 cut(s) 27
BmrFI CCNGG 2 cut(s) 739, 807
BmrI ACTGGG 1 cut(s) 144
BmsI GCATC 2 cut(s) 456, 556
BmuI ACTGGG 1 cut(s) 144
BpiI GAAGAC 2 cut(s) 238, 864
BplI GAGNNNNNCTC 2 cut(s) 401, 433
BpmI CTGGAG 1 cut(s) 508
Bpu10I CCTNAGC 1 cut(s) 240
BsaI GGTCTC 3 cut(s) 110, 207, 760
BsaJI CCNNGG 1 cut(s) 805
Bsc4I CCNNNNNNNGG 2 cut(s) 223, 811
Bse1I ACTGG 1 cut(s) 139
Bse3DI GCAATG 1 cut(s) 831
BseBI CCWGG 2 cut(s) 739, 807
BseDI CCNNGG 1 cut(s) 805
BseGI GGATG 1 cut(s) 206
BseLI CCNNNNNNNGG 2 cut(s) 223, 811
BseMI GCAATG 1 cut(s) 831
BseMII CTCAG 3 cut(s) 85, 434, 918
BseNI ACTGG 1 cut(s) 139
BseSI GKGCMC 1 cut(s) 665
BseXI GCAGC 3 cut(s) 184, 248, 383
BseYI CCCAGC 1 cut(s) 839
BshFI GGCC 2 cut(s) 29, 685
BsiHKAI GWGCWC 1 cut(s) 524
BslI CCNNNNNNNGG 2 cut(s) 223, 811
BsmAI GTCTC 5 cut(s) 43, 110, 207, 760, 925
BsmBI CGTCTC 1 cut(s) 925
BsnI GGCC 2 cut(s) 29, 685
Bso31I GGTCTC 3 cut(s) 110, 207, 760
Bsp1286I GDGCHC 2 cut(s) 524, 665
Bsp143I GATC 4 cut(s) 91, 459, 471, 622
BspACI CCGC 1 cut(s) 179
BspANI GGCC 2 cut(s) 29, 685
BspCNI CTCAG 3 cut(s) 84, 433, 919
BspMAI CTGCAG 1 cut(s) 877
BspPI GGATC 2 cut(s) 454, 466
BspTNI GGTCTC 3 cut(s) 110, 207, 760
BsrDI GCAATG 1 cut(s) 831
BsrI ACTGG 1 cut(s) 139
BssECI CCNNGG 1 cut(s) 805
BssMI GATC 4 cut(s) 91, 459, 471, 622
Bst2UI CCWGG 2 cut(s) 739, 807
Bst4CI ACNGT 5 cut(s) 121, 196, 221, 631, 797
Bst6I CTCTTC 2 cut(s) 34, 41
BstC8I GCNNGC 3 cut(s) 177, 720, 885
BstDEI CTNAG 5 cut(s) 71, 240, 420, 587, 927
BstF5I GGATG 1 cut(s) 206
BstKTI GATC 4 cut(s) 94, 462, 474, 625
BstMAI GTCTC 5 cut(s) 43, 110, 207, 760, 925
BstMBI GATC 4 cut(s) 91, 459, 471, 622
BstMWI GCNNNNNNNGC 3 cut(s) 26, 872, 889
BstNI CCWGG 2 cut(s) 739, 807
BstSCI CCNGG 2 cut(s) 737, 805
BstSFI CTRYAG 1 cut(s) 873
BstSLI GKGCMC 1 cut(s) 665
BstV1I GCAGC 3 cut(s) 184, 248, 383
BstV2I GAAGAC 2 cut(s) 238, 864
BstXI CCANNNNNNTGG 2 cut(s) 257, 745
BsuRI GGCC 2 cut(s) 29, 685
BtsCI GGATG 1 cut(s) 206
BtsI GCAGTG 2 cut(s) 132, 870
BtsIMutI CAGTG 4 cut(s) 132, 226, 696, 870
Cac8I GCNNGC 3 cut(s) 177, 720, 885
Cfr13I GGNCC 1 cut(s) 27
Csp6I GTAC 1 cut(s) 653
CviAII CATG 2 cut(s) 185, 497
CviQI GTAC 1 cut(s) 653
DdeI CTNAG 5 cut(s) 71, 240, 420, 587, 927
DpnI GATC 4 cut(s) 93, 461, 473, 624
DpnII GATC 4 cut(s) 91, 459, 471, 622
DraIII CACNNNGTG 1 cut(s) 223
DrdI GACNNNNNNGTC 1 cut(s) 875
DriI GACNNNNNGTC 1 cut(s) 301
DseDI GACNNNNNNGTC 1 cut(s) 875
Eam1104I CTCTTC 2 cut(s) 34, 41
Eam1105I GACNNNNNGTC 1 cut(s) 301
EarI CTCTTC 2 cut(s) 34, 41
Ecl136II GAGCTC 1 cut(s) 522
Eco24I GRGCYC 1 cut(s) 524
Eco31I GGTCTC 3 cut(s) 110, 207, 760
Eco32I GATATC 1 cut(s) 355
Eco53kI GAGCTC 1 cut(s) 522
Eco57I CTGAAG 1 cut(s) 876
EcoICRI GAGCTC 1 cut(s) 522
EcoRII CCWGG 2 cut(s) 737, 805
EcoRV GATATC 1 cut(s) 355
EcoT38I GRGCYC 1 cut(s) 524
Esp3I CGTCTC 1 cut(s) 925
FaeI CATG 2 cut(s) 188, 500
FatI CATG 2 cut(s) 184, 496
FbaI TGATCA 2 cut(s) 91, 622
Fnu4HI GCNGC 4 cut(s) 173, 180, 237, 372
FokI GGATG 1 cut(s) 193
FriOI GRGCYC 1 cut(s) 524
Fsp4HI GCNGC 4 cut(s) 173, 180, 237, 372
GluI GCNGC 4 cut(s) 173, 180, 237, 372
GsaI CCCAGC 1 cut(s) 843
GsuI CTGGAG 1 cut(s) 508
HaeIII GGCC 2 cut(s) 29, 685
Hin1II CATG 2 cut(s) 188, 500
HincII GTYRAC 1 cut(s) 727
HindII GTYRAC 1 cut(s) 727
HindIII AAGCTT 1 cut(s) 716
HinfI GANTC 2 cut(s) 51, 671
HphI GGTGA 3 cut(s) 86, 202, 788
Hpy166II GTNNAC 2 cut(s) 696, 727
Hpy188I TCNGA 6 cut(s) 13, 74, 91, 264, 397, 763
Hpy188III TCNNGA 5 cut(s) 210, 358, 525, 817, 896
Hpy8I GTNNAC 2 cut(s) 696, 727
HpyCH4III ACNGT 5 cut(s) 121, 196, 221, 631, 797
HpyCH4IV ACGT 1 cut(s) 692
HpyCH4V TGCA 5 cut(s) 125, 371, 722, 824, 875
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 872, 889
HpyF3I CTNAG 5 cut(s) 71, 240, 420, 587, 927
HpySE526I ACGT 1 cut(s) 692
Hsp92II CATG 2 cut(s) 188, 500
Ksp22I TGATCA 2 cut(s) 91, 622
Kzo9I GATC 4 cut(s) 91, 459, 471, 622
LmnI GCTCC 2 cut(s) 527, 863
Lsp1109I GCAGC 3 cut(s) 184, 248, 383
LweI GCATC 2 cut(s) 456, 556
MaeII ACGT 1 cut(s) 692
MaeIII GTNAC 4 cut(s) 130, 190, 797, 907
MalI GATC 4 cut(s) 93, 461, 473, 624
MboI GATC 4 cut(s) 91, 459, 471, 622
MboII GAAGA 6 cut(s) 51, 58, 238, 575, 623, 869
MhlI GDGCHC 2 cut(s) 524, 665
MluCI AATT 8 cut(s) 337, 379, 400, 436, 507, 571, 783, 917
MlyI GAGTC 1 cut(s) 45
MnlI CCTC 7 cut(s) 93, 247, 427, 494, 652, 744, 766
MseI TTAA 2 cut(s) 378, 513
MspA1I CMGCKG 2 cut(s) 374, 854
MspR9I CCNGG 2 cut(s) 739, 807
MvaI CCWGG 2 cut(s) 739, 807
MwoI GCNNNNNNNGC 3 cut(s) 26, 872, 889
NdeII GATC 4 cut(s) 91, 459, 471, 622
NlaIII CATG 2 cut(s) 188, 500
NmuCI GTSAC 1 cut(s) 190
PfeI GAWTC 1 cut(s) 671
PflMI CCANNNNNTGG 1 cut(s) 223
PkrI GCNGC 4 cut(s) 174, 181, 238, 373
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
Psp124BI GAGCTC 1 cut(s) 524
Psp1406I AACGTT 1 cut(s) 692
Psp6I CCWGG 2 cut(s) 737, 805
PspFI CCCAGC 1 cut(s) 839
PspGI CCWGG 2 cut(s) 737, 805
PspPI GGNCC 1 cut(s) 27
PstI CTGCAG 1 cut(s) 877
PvuII CAGCTG 2 cut(s) 374, 854
RsaI GTAC 1 cut(s) 654
RsaNI GTAC 1 cut(s) 653
SacI GAGCTC 1 cut(s) 524
SaqAI TTAA 2 cut(s) 378, 513
SatI GCNGC 4 cut(s) 173, 180, 237, 372
Sau3AI GATC 4 cut(s) 91, 459, 471, 622
Sau96I GGNCC 1 cut(s) 27
SchI GAGTC 1 cut(s) 45
ScrFI CCNGG 2 cut(s) 739, 807
SduI GDGCHC 2 cut(s) 524, 665
SfaNI GCATC 2 cut(s) 456, 556
SfcI CTRYAG 1 cut(s) 873
Sse9I AATT 8 cut(s) 337, 379, 400, 436, 507, 571, 783, 917
SsiI CCGC 1 cut(s) 179
SspI AATATT 2 cut(s) 595, 847
SstI GAGCTC 1 cut(s) 524
StyD4I CCNGG 2 cut(s) 737, 805
TaaI ACNGT 5 cut(s) 121, 196, 221, 631, 797
TaiI ACGT 1 cut(s) 695
TaqI TCGA 4 cut(s) 285, 408, 505, 635
TasI AATT 8 cut(s) 337, 379, 400, 436, 507, 571, 783, 917
TatI WGTACW 1 cut(s) 652
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 1 cut(s) 671
Tru1I TTAA 2 cut(s) 378, 513
Tru9I TTAA 2 cut(s) 378, 513
TscAI CASTG 4 cut(s) 132, 226, 703, 877
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 3 cut(s) 172, 236, 371
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 1 cut(s) 497
TspGWI ACGGA 1 cut(s) 876
TspRI CASTG 4 cut(s) 132, 226, 703, 877
Van91I CCANNNNNTGG 1 cut(s) 223
XapI RAATTY 3 cut(s) 571, 783, 917
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.