Rroxscaffold_3G00266360

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0012340
Physical Location & Seq
Reverse (-)
59643264 .. 59646010
2747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00266360.1

Sequence Viewer

Length: 1041 bp
ATGGGGAAAACTGAAAAGACTGAAAAGGCCAAAGAGAGAAGAGAAAAGCGACGCCAGGAGATCTCTCTTCTCAGAACCATCCCTTATTCCGATCACCAAAGGTGGTGGTCGGCTGAAACCATTGCGGTGGTGACCGGAGGCAATAGGGGCATTGGATTTGAGATTACTAGGCAACTTGCGGCGCATGGAGTGACTGTTATACTTACATCCAGAGACCCCAATGTGGGACTTGAAGCGGCTAAGGTCCTACAAGAAGGGGGTCTCAATGTGTTTTTTCATCAGCTGGATGTGTTGGAGCCAGTGTCCATCAAAGAGTTTTGTGACTGGTTGGTGGAAAACTATGGTGGCTTGGATATTCTGGTGAATAATGCAGCGGTTAATTACAATCAGGGGTCTGATAATTCTGTGGAGCATGCAGCTCAAGTGTGCTTTACGAATTATTATGGCACCAAAAATATGATTCAGGCTCTGATCCCCTTGATGAAGCATTCATCTGCCGGAGGTCGTATTGTTAATGTGAGCTCAAGATTGGGGAGACTAAATGGTAAACGAAATAAAATTGAAGATCAGAATTTGAGAGAACAACTTGCCAATACAGAAACGCTCACAGAGGAAATTATTGATGGAGCAGTAAACAGTTTTCTAAAACAAGTAGAAGAGGGCACATGGGAATCAGGTGGGTGGCCTAAAACGTTTACTGACTACTCGGTATCAAAACTTGCAGTCAATACTTACACCAGGCTAATGGCAAAGATACTCTCTGATAGACCTGAAGGCGAGAAGATCTATATCAACTGTTACTGCCCAGGTTGGGTAAAGACTGCTATGACAGGCTATGCTGGGAACATATCAGCTGAAGAAGGAGCTGACACTGCAGTTTGGTTGGCCTTGCTTCCAGATCAGGCAATAACGGGGAAATTTTTCGCTGAGAGACGTGAGATAAAGAATACCCTGGCTGTGTTGACGAAGGTAGCCAGCAACTACCATTGTAGGATGGAGATGGAAATGATAGATCCTCTGATGTGTGAGGTGTTGCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204
Pfam Domains
Protein Families
adh_short

Protein Analysis

346

Amino Acids

38.69

Weight (kDa)

5.97

Isoelectric Point (pI)

36.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 41 - 181 5.5e-29 short chain dehydrogenase
KR PF08659 42 - 157 2.9e-06 KR domain
Epimerase PF01370 43 - 175 5.1e-06 NAD dependent epimerase/dehydratase family
adh_short_C2 PF13561 48 - 178 3e-21 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012340)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51030
fragaria_vesca FvH4_5g09740 FvH4_5g09740 FvH4_5g09740
malus_domestica MD00G1129700.v1.1 MD14G1145700.v1.1
prunus_persica Prupe.5G140000_v2.0.a1
pyrus_communis pycom06g12030 pycom14g12070
rosa_chinensis RchiOBHm_Chr7g0188491
rosa_laevigata RLG00000004690
rosa_multiflora Rmu_sc0001576.1_g000006 Rmu_sc0016427.1_g000004
rosa_roxburghii Rroxscaffold_3G00266360
rosa_rugosa Rorug06G0490900
rosa_samantha Rh7AG095500 Rh7BG097200 Rh7DG097400
rosa_wichuraiana Rw7G008250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 446
AciI CCGC 4 cut(s) 125, 179, 236, 374
AclI AACGTT 1 cut(s) 692
AclWI GGATC 2 cut(s) 466, 1007
AcsI RAATTY 2 cut(s) 571, 917
AcuI CTGAAG 2 cut(s) 792, 876
AcyI GRCGYC 1 cut(s) 52
AfiI CCNNNNNNNGG 3 cut(s) 223, 224, 811
AgsI TTSAA 2 cut(s) 233, 563
AjiI CACGTC 1 cut(s) 935
AjnI CCWGG 4 cut(s) 54, 737, 805, 951
AluBI AGCT 5 cut(s) 283, 419, 522, 854, 866
AluI AGCT 5 cut(s) 283, 419, 522, 854, 866
Alw21I GWGCWC 1 cut(s) 524
Alw26I GTCTC 4 cut(s) 207, 266, 529, 925
AlwI GGATC 2 cut(s) 466, 1007
AlwNI CAGNNNCTG 1 cut(s) 469
AoxI GGCC 3 cut(s) 27, 683, 885
ApeKI GCWGC 2 cut(s) 371, 416
ApoI RAATTY 2 cut(s) 571, 917
Asp700I GAANNNNTTC 1 cut(s) 920
AspLEI GCGC 1 cut(s) 184
AspS9I GGNCC 1 cut(s) 244
AsuHPI GGTGA 3 cut(s) 86, 142, 373
AvaII GGWCC 1 cut(s) 244
BaeGI GKGCMC 1 cut(s) 665
BanI GGYRCC 1 cut(s) 446
BanII GRGCYC 1 cut(s) 524
Bbv12I GWGCWC 1 cut(s) 524
BbvI GCAGC 2 cut(s) 383, 428
BccI CCATC 5 cut(s) 86, 314, 617, 988, 994
BciT130I CCWGG 4 cut(s) 56, 739, 807, 953
BcoDI GTCTC 4 cut(s) 207, 266, 529, 925
BfaI CTAG 2 cut(s) 168, 1039
BfmI CTRYAG 1 cut(s) 873
BglII AGATCT 2 cut(s) 60, 783
BisI GCNGC 4 cut(s) 180, 237, 372, 417
BlsI GCNGC 4 cut(s) 181, 238, 373, 418
Bme1390I CCNGG 4 cut(s) 56, 739, 807, 953
Bme18I GGWCC 1 cut(s) 244
BmgBI CACGTC 1 cut(s) 935
BmgT120I GGNCC 1 cut(s) 244
BmiI GGNNCC 2 cut(s) 297, 448
BmrFI CCNGG 4 cut(s) 56, 739, 807, 953
Bpu10I CCTNAGC 1 cut(s) 240
BpuEI CTTGAG 2 cut(s) 405, 508
BsaBI GATNNNNATC 1 cut(s) 788
BsaHI GRCGYC 1 cut(s) 52
BsaI GGTCTC 2 cut(s) 207, 266
BsaJI CCNNGG 2 cut(s) 805, 951
BsaWI WCCGGW 1 cut(s) 134
BsaXI ACNNNNNCTCC 4 cut(s) 180, 210, 287, 317
Bsc4I CCNNNNNNNGG 3 cut(s) 223, 224, 811
Bse1I ACTGG 2 cut(s) 299, 329
Bse3DI GCAATG 1 cut(s) 120
Bse8I GATNNNNATC 1 cut(s) 788
BseBI CCWGG 4 cut(s) 56, 739, 807, 953
BseDI CCNNGG 2 cut(s) 805, 951
BseGI GGATG 4 cut(s) 78, 206, 292, 999
BseJI GATNNNNATC 1 cut(s) 788
BseLI CCNNNNNNNGG 3 cut(s) 223, 224, 811
BseMI GCAATG 1 cut(s) 120
BseMII CTCAG 2 cut(s) 85, 918
BseNI ACTGG 2 cut(s) 299, 329
BseSI GKGCMC 1 cut(s) 665
BseXI GCAGC 2 cut(s) 383, 428
BseYI CCCAGC 1 cut(s) 839
BshFI GGCC 3 cut(s) 29, 685, 887
BshNI GGYRCC 1 cut(s) 446
BsiHKAI GWGCWC 1 cut(s) 524
BsiSI CCGG 2 cut(s) 135, 498
BslFI GGGAC 1 cut(s) 240
BslI CCNNNNNNNGG 3 cut(s) 223, 224, 811
BsmAI GTCTC 4 cut(s) 207, 266, 529, 925
BsmBI CGTCTC 1 cut(s) 925
BsmFI GGGAC 1 cut(s) 240
BsmI GAATGC 1 cut(s) 487
BsnI GGCC 3 cut(s) 29, 685, 887
Bso31I GGTCTC 2 cut(s) 207, 266
Bsp1286I GDGCHC 2 cut(s) 524, 665
Bsp143I GATC 7 cut(s) 60, 91, 471, 565, 783, 898, 1012
BspACI CCGC 4 cut(s) 125, 179, 236, 374
BspANI GGCC 3 cut(s) 29, 685, 887
BspCNI CTCAG 2 cut(s) 84, 919
BspLI GGNNCC 2 cut(s) 297, 448
BspMAI CTGCAG 1 cut(s) 877
BspPI GGATC 2 cut(s) 466, 1007
BspT107I GGYRCC 1 cut(s) 446
BspTNI GGTCTC 2 cut(s) 207, 266
BsrDI GCAATG 1 cut(s) 120
BsrI ACTGG 2 cut(s) 299, 329
BssECI CCNNGG 2 cut(s) 805, 951
BssMI GATC 7 cut(s) 60, 91, 471, 565, 783, 898, 1012
BssNI GRCGYC 1 cut(s) 52
Bst2UI CCWGG 4 cut(s) 56, 739, 807, 953
Bst4CI ACNGT 3 cut(s) 196, 638, 797
Bst6I CTCTTC 3 cut(s) 34, 72, 651
BstACI GRCGYC 1 cut(s) 52
BstC8I GCNNGC 2 cut(s) 414, 976
BstDEI CTNAG 3 cut(s) 71, 240, 927
BstEII GGTNACC 1 cut(s) 130
BstF5I GGATG 4 cut(s) 78, 206, 292, 999
BstHHI GCGC 1 cut(s) 184
BstKTI GATC 7 cut(s) 63, 94, 474, 568, 786, 901, 1015
BstMAI GTCTC 4 cut(s) 207, 266, 529, 925
BstMBI GATC 7 cut(s) 60, 91, 471, 565, 783, 898, 1012
BstMWI GCNNNNNNNGC 2 cut(s) 147, 872
BstNI CCWGG 4 cut(s) 56, 739, 807, 953
BstNSI RCATGY 1 cut(s) 416
BstPI GGTNACC 1 cut(s) 130
BstSCI CCNGG 4 cut(s) 54, 737, 805, 951
BstSFI CTRYAG 1 cut(s) 873
BstSLI GKGCMC 1 cut(s) 665
BstV1I GCAGC 2 cut(s) 383, 428
BstX2I RGATCY 3 cut(s) 60, 783, 1012
BstXI CCANNNNNNTGG 2 cut(s) 127, 745
BstYI RGATCY 3 cut(s) 60, 783, 1012
BsuRI GGCC 3 cut(s) 29, 685, 887
BtrI CACGTC 1 cut(s) 935
BtsCI GGATG 4 cut(s) 78, 206, 292, 999
BtsI GCAGTG 1 cut(s) 870
BtsIMutI CAGTG 2 cut(s) 306, 870
Cac8I GCNNGC 2 cut(s) 414, 976
CaiI CAGNNNCTG 1 cut(s) 469
CfoI GCGC 1 cut(s) 184
Cfr13I GGNCC 1 cut(s) 244
CseI GACGC 1 cut(s) 60
CspCI CAANNNNNGTGG 2 cut(s) 86, 121
CviAII CATG 3 cut(s) 185, 413, 666
DdeI CTNAG 3 cut(s) 71, 240, 927
DpnI GATC 7 cut(s) 62, 93, 473, 567, 785, 900, 1014
DpnII GATC 7 cut(s) 60, 91, 471, 565, 783, 898, 1012
Eam1104I CTCTTC 3 cut(s) 34, 72, 651
EarI CTCTTC 3 cut(s) 34, 72, 651
Ecl136II GAGCTC 1 cut(s) 522
Eco24I GRGCYC 1 cut(s) 524
Eco31I GGTCTC 2 cut(s) 207, 266
Eco47I GGWCC 1 cut(s) 244
Eco53kI GAGCTC 1 cut(s) 522
Eco57I CTGAAG 2 cut(s) 792, 876
Eco91I GGTNACC 1 cut(s) 130
EcoICRI GAGCTC 1 cut(s) 522
EcoO109I RGGNCCY 1 cut(s) 244
EcoO65I GGTNACC 1 cut(s) 130
EcoRII CCWGG 4 cut(s) 54, 737, 805, 951
EcoT38I GRGCYC 1 cut(s) 524
Esp3I CGTCTC 1 cut(s) 925
FaeI CATG 3 cut(s) 188, 416, 669
FaqI GGGAC 1 cut(s) 240
FatI CATG 3 cut(s) 184, 412, 665
Fnu4HI GCNGC 4 cut(s) 180, 237, 372, 417
FokI GGATG 4 cut(s) 65, 193, 299, 1006
FriOI GRGCYC 1 cut(s) 524
Fsp4HI GCNGC 4 cut(s) 180, 237, 372, 417
FspBI CTAG 2 cut(s) 168, 1039
GlaI GCGC 1 cut(s) 183
GluI GCNGC 4 cut(s) 180, 237, 372, 417
GsaI CCCAGC 1 cut(s) 843
HaeIII GGCC 3 cut(s) 29, 685, 887
HapII CCGG 2 cut(s) 135, 498
HgaI GACGC 1 cut(s) 60
HhaI GCGC 1 cut(s) 184
Hin1I GRCGYC 1 cut(s) 52
Hin1II CATG 3 cut(s) 188, 416, 669
Hin6I GCGC 1 cut(s) 182
HinP1I GCGC 1 cut(s) 182
HincII GTYRAC 1 cut(s) 963
HindII GTYRAC 1 cut(s) 963
HinfI GANTC 2 cut(s) 460, 671
HpaII CCGG 2 cut(s) 135, 498
HphI GGTGA 3 cut(s) 86, 142, 373
Hpy166II GTNNAC 4 cut(s) 548, 634, 696, 963
Hpy188I TCNGA 7 cut(s) 74, 91, 397, 471, 570, 763, 1020
Hpy188III TCNNGA 3 cut(s) 210, 525, 896
Hpy8I GTNNAC 4 cut(s) 548, 634, 696, 963
Hpy99I CGWCG 1 cut(s) 54
HpyAV CCTTC 4 cut(s) 248, 767, 854, 961
HpyCH4III ACNGT 3 cut(s) 196, 638, 797
HpyCH4IV ACGT 2 cut(s) 692, 934
HpyCH4V TGCA 4 cut(s) 371, 416, 722, 875
HpyF10VI GCNNNNNNNGC 2 cut(s) 147, 872
HpyF3I CTNAG 3 cut(s) 71, 240, 927
HpySE526I ACGT 2 cut(s) 692, 934
Hsp92I GRCGYC 1 cut(s) 52
Hsp92II CATG 3 cut(s) 188, 416, 669
HspAI GCGC 1 cut(s) 182
Kzo9I GATC 7 cut(s) 60, 91, 471, 565, 783, 898, 1012
LmnI GCTCC 4 cut(s) 295, 409, 626, 863
Lsp1109I GCAGC 2 cut(s) 383, 428
MaeI CTAG 2 cut(s) 168, 1039
MaeII ACGT 2 cut(s) 692, 934
MaeIII GTNAC 4 cut(s) 130, 190, 320, 797
MalI GATC 7 cut(s) 62, 93, 473, 567, 785, 900, 1014
MboI GATC 7 cut(s) 60, 91, 471, 565, 783, 898, 1012
MboII GAAGA 6 cut(s) 51, 59, 575, 668, 793, 869
MflI RGATCY 3 cut(s) 60, 783, 1012
MhlI GDGCHC 2 cut(s) 524, 665
MluCI AATT 7 cut(s) 379, 400, 436, 558, 571, 615, 917
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 6 cut(s) 131, 494, 604, 652, 1021, 1026
MroXI GAANNNNTTC 1 cut(s) 920
MseI TTAA 2 cut(s) 378, 513
MslI CAYNNNNRTG 1 cut(s) 125
MspA1I CMGCKG 3 cut(s) 283, 374, 854
MspI CCGG 2 cut(s) 135, 498
MspR9I CCNGG 4 cut(s) 56, 739, 807, 953
Mva1269I GAATGC 1 cut(s) 487
MvaI CCWGG 4 cut(s) 56, 739, 807, 953
MwoI GCNNNNNNNGC 2 cut(s) 147, 872
NdeII GATC 7 cut(s) 60, 91, 471, 565, 783, 898, 1012
NlaIII CATG 3 cut(s) 188, 416, 669
NlaIV GGNNCC 2 cut(s) 297, 448
NmuCI GTSAC 3 cut(s) 130, 190, 320
NspI RCATGY 1 cut(s) 416
PaeI GCATGC 1 cut(s) 416
PctI GAATGC 1 cut(s) 487
PdmI GAANNNNTTC 1 cut(s) 920
PfeI GAWTC 2 cut(s) 460, 671
PkrI GCNGC 4 cut(s) 181, 238, 373, 418
PpuMI RGGWCCY 1 cut(s) 244
Psp124BI GAGCTC 1 cut(s) 524
Psp1406I AACGTT 1 cut(s) 692
Psp5II RGGWCCY 1 cut(s) 244
Psp6I CCWGG 4 cut(s) 54, 737, 805, 951
PspEI GGTNACC 1 cut(s) 130
PspFI CCCAGC 1 cut(s) 839
PspGI CCWGG 4 cut(s) 54, 737, 805, 951
PspN4I GGNNCC 2 cut(s) 297, 448
PspPI GGNCC 1 cut(s) 244
PspPPI RGGWCCY 1 cut(s) 244
PstI CTGCAG 1 cut(s) 877
PstNI CAGNNNCTG 1 cut(s) 469
PsuI RGATCY 3 cut(s) 60, 783, 1012
PvuII CAGCTG 2 cut(s) 283, 854
RseI CAYNNNNRTG 1 cut(s) 125
SacI GAGCTC 1 cut(s) 524
SaqAI TTAA 2 cut(s) 378, 513
SatI GCNGC 4 cut(s) 180, 237, 372, 417
Sau3AI GATC 7 cut(s) 60, 91, 471, 565, 783, 898, 1012
Sau96I GGNCC 1 cut(s) 244
ScrFI CCNGG 4 cut(s) 56, 739, 807, 953
SduI GDGCHC 2 cut(s) 524, 665
SfcI CTRYAG 1 cut(s) 873
SinI GGWCC 1 cut(s) 244
SmiMI CAYNNNNRTG 1 cut(s) 125
SmlI CTYRAG 2 cut(s) 420, 523
SmoI CTYRAG 2 cut(s) 420, 523
SphI GCATGC 1 cut(s) 416
Sse9I AATT 7 cut(s) 379, 400, 436, 558, 571, 615, 917
SsiI CCGC 4 cut(s) 125, 179, 236, 374
SspMI CTAG 2 cut(s) 168, 1039
SstI GAGCTC 1 cut(s) 524
StyD4I CCNGG 4 cut(s) 54, 737, 805, 951
TaaI ACNGT 3 cut(s) 196, 638, 797
TaiI ACGT 2 cut(s) 695, 937
TasI AATT 7 cut(s) 379, 400, 436, 558, 571, 615, 917
TauI GCSGC 2 cut(s) 182, 239
TfiI GAWTC 2 cut(s) 460, 671
Tru1I TTAA 2 cut(s) 378, 513
Tru9I TTAA 2 cut(s) 378, 513
TscAI CASTG 2 cut(s) 306, 877
TseFI GTSAC 3 cut(s) 130, 190, 320
TseI GCWGC 2 cut(s) 371, 416
Tsp45I GTSAC 3 cut(s) 130, 190, 320
TspDTI ATGAA 3 cut(s) 266, 480, 497
TspRI CASTG 2 cut(s) 306, 877
VpaK11BI GGWCC 1 cut(s) 244
XapI RAATTY 2 cut(s) 571, 917
XceI RCATGY 1 cut(s) 416
XmnI GAANNNNTTC 1 cut(s) 920
XspI CTAG 2 cut(s) 168, 1039
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.