AT5G51180

Putative serine esterase (DUF676)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015180
Physical Location & Seq
Forward (+)
20796950 .. 20801479
4530 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G51180.1

Sequence Viewer

Length: 1074 bp
ATGGAGAAGCACGAGGAGGAAAACGGTCTTTGCAAGGCGGAATCTGTTGATGGTAGCCTTGATGTTTGGAGTTGTCAGAATTCTGATTCTTCTTCCGCTGATCACCTTGTCGTTATGGTCCATGGGATCTTGGGAAGTACGGATGATTGGAAGTTTGGAGCTGAGCAGTTCGTCAAAAAGATGCCAGACAAAGTCTTTGTTCACTGTAGTGAAAAGAATGTGTCTGCGCTTACTCTAGATGGTGTGGATGTAATGGGTGAACGTCTAGCAGCTGAGGTTCTTGATATTATTCAGAGAAAACCAAATATCTGTAAAATCTCCTTTGTTGCACATTCTTTGGGAGGGCTTGCAGCAAGATATGCAATTGGGAAATTGTACAAGCCCGCTAATCAGGAAGATGTTAAAGACTCGGTAGCGGACAGTAGTCAAGAGACTCCCAAAGGCACAATATGTGGACTCGAGGCTATGAATTTTATTACTGTAGCTACACCACATTTGGGTTCAATGGGTAATAAACAGGTTCCGTTTCTCTTTGGTTTTTCTTCCATTGAGAAAGTTGCAGGTCTCATTATCCACTGGATATTTAAAAGAACGGGCCGTCACCTTTTCTTGAAGGATGAAGAAGAGGGAAAACCACCATTGCTTCGACGCATGGTGGAAGATACCGATGATTGTCATTTCATATCTGCACTGCGAGCCTTCAAAAGGCGGGTGGCTTATTCAAATGTGGGCCATGATCACGTTGTTGGCTGGAAGACGGCATCCATTAGACGTGACAGTGAATTGCCTAAGTGGGAAGATTCTCTGAATGAGAAGTATCCTCATATTGTTTACGAAGAACTCTGCAAGGCATGTGATATGGAGGACATACCAGAAGGCGAGAATCATTCAGACGACATAGAAGAAGAAATGATCAAAGGCCTCTCCTCTGTCTCATGGGAAAAAGTTGATGTTAGCTTTCACAGTAGCAGGCAGAGGTTTGCTGCCCATAGTGTTATACAGGTTAAAAATGAAGATATGCATATAGAAGGAGCAGATGTCATAGAGCATATCATCGATCATTTCCATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF676

Protein Analysis

357

Amino Acids

40.04

Weight (kDa)

5.37

Isoelectric Point (pI)

48.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF676 PF05057 31 - 253 2.6e-75 Putative serine esterase (DUF676)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015180)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51180 AT5G51180
fragaria_vesca FvH4_7g26960
malus_domestica MD01G1177400.v1.1 MD07G1249100.v1.1
prunus_persica Prupe.2G272700_v2.0.a1
pyrus_communis pycom01g18790 pycom07g22230
rosa_chinensis RchiOBHm_Chr1g0373671
rosa_laevigata RLG00000026808
rosa_roxburghii Rroxscaffold_4G00284070
rosa_rugosa Rorug01G0378900
rosa_samantha Rh1AG388300 Rh1CG365600 Rh1DG383100
rosa_wichuraiana Rw1G034690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 551
AciI CCGC 5 cut(s) 38, 96, 384, 416, 709
AclWI GGATC 1 cut(s) 134
AcsI RAATTY 2 cut(s) 79, 469
AfaI GTAC 2 cut(s) 139, 377
AfiI CCNNNNNNNGG 2 cut(s) 497, 705
AgsI TTSAA 4 cut(s) 504, 613, 703, 723
AjiI CACGTC 1 cut(s) 773
AleI CACNNNNGTG 1 cut(s) 207
AluBI AGCT 4 cut(s) 161, 272, 485, 957
AluI AGCT 4 cut(s) 161, 272, 485, 957
Alw26I GTCTC 3 cut(s) 425, 569, 937
AlwI GGATC 1 cut(s) 134
Ama87I CYCGRG 1 cut(s) 458
AoxI GGCC 3 cut(s) 595, 730, 919
ApeKI GCWGC 3 cut(s) 269, 350, 983
ApoI RAATTY 2 cut(s) 79, 469
ArsI GACNNNNNNTTYG 2 cut(s) 179, 211
AspLEI GCGC 1 cut(s) 229
AspS9I GGNCC 3 cut(s) 118, 595, 730
AsuHPI GGTGA 3 cut(s) 95, 269, 593
AvaI CYCGRG 1 cut(s) 458
AvaII GGWCC 1 cut(s) 118
BauI CACGAG 1 cut(s) 11
BbsI GAAGAC 1 cut(s) 761
BbvCI CCTCAGC 1 cut(s) 273
BbvI GCAGC 3 cut(s) 281, 362, 970
BccI CCATC 2 cut(s) 44, 233
BceAI ACGGC 2 cut(s) 582, 774
BciVI GTATCC 1 cut(s) 828
BclI TGATCA 3 cut(s) 100, 736, 912
BcoDI GTCTC 3 cut(s) 425, 569, 937
BfaI CTAG 2 cut(s) 236, 266
BfmI CTRYAG 2 cut(s) 205, 480
BfuAI ACCTGC 1 cut(s) 551
BfuI GTATCC 1 cut(s) 828
BisI GCNGC 3 cut(s) 270, 351, 984
BlpI GCTNAGC 1 cut(s) 162
BlsI GCNGC 3 cut(s) 271, 352, 985
Bme18I GGWCC 1 cut(s) 118
BmeT110I CYCGRG 1 cut(s) 458
BmgBI CACGTC 1 cut(s) 773
BmgT120I GGNCC 3 cut(s) 118, 595, 730
BmiI GGNNCC 1 cut(s) 522
BmsI GCATC 2 cut(s) 171, 770
BoxI GACNNNNGTC 1 cut(s) 423
BpiI GAAGAC 1 cut(s) 761
Bpu10I CCTNAGC 1 cut(s) 273
Bpu1102I GCTNAGC 1 cut(s) 162
Bsa29I ATCGAT 1 cut(s) 1056
BsaI GGTCTC 1 cut(s) 569
BsaJI CCNNGG 1 cut(s) 121
BsaXI ACNNNNNCTCC 2 cut(s) 1023, 1053
Bsc4I CCNNNNNNNGG 2 cut(s) 497, 705
Bse1I ACTGG 1 cut(s) 581
Bse3DI GCAATG 1 cut(s) 638
BseCI ATCGAT 1 cut(s) 1056
BseDI CCNNGG 1 cut(s) 121
BseGI GGATG 4 cut(s) 148, 253, 622, 761
BseLI CCNNNNNNNGG 2 cut(s) 497, 705
BseMI GCAATG 1 cut(s) 638
BseMII CTCAG 2 cut(s) 153, 264
BseNI ACTGG 1 cut(s) 581
BseRI GAGGAG 2 cut(s) 29, 916
BseXI GCAGC 3 cut(s) 281, 362, 970
BsgI GTGCAG 1 cut(s) 672
BshFI GGCC 3 cut(s) 597, 732, 921
BshVI ATCGAT 1 cut(s) 1056
BsiHKCI CYCGRG 1 cut(s) 458
BslI CCNNNNNNNGG 2 cut(s) 497, 705
BsmAI GTCTC 3 cut(s) 425, 569, 937
BsnI GGCC 3 cut(s) 597, 732, 921
Bso31I GGTCTC 1 cut(s) 569
BsoBI CYCGRG 1 cut(s) 458
Bsp1407I TGTACA 1 cut(s) 375
Bsp143I GATC 5 cut(s) 100, 126, 736, 912, 1057
Bsp1720I GCTNAGC 1 cut(s) 162
Bsp19I CCATGG 1 cut(s) 121
BspACI CCGC 5 cut(s) 38, 96, 384, 416, 709
BspANI GGCC 3 cut(s) 597, 732, 921
BspCNI CTCAG 2 cut(s) 154, 265
BspDI ATCGAT 1 cut(s) 1056
BspLI GGNNCC 1 cut(s) 522
BspMI ACCTGC 1 cut(s) 551
BspPI GGATC 1 cut(s) 134
BspTNI GGTCTC 1 cut(s) 569
BsrDI GCAATG 1 cut(s) 638
BsrGI TGTACA 1 cut(s) 375
BsrI ACTGG 1 cut(s) 581
BssECI CCNNGG 1 cut(s) 121
BssMI GATC 5 cut(s) 100, 126, 736, 912, 1057
BssSI CACGAG 1 cut(s) 11
BssT1I CCWWGG 1 cut(s) 121
Bst2BI CACGAG 1 cut(s) 11
Bst4CI ACNGT 6 cut(s) 26, 206, 422, 481, 779, 965
Bst6I CTCTTC 1 cut(s) 618
BstAPI GCANNNNNTGC 1 cut(s) 359
BstAUI TGTACA 1 cut(s) 375
BstC8I GCNNGC 4 cut(s) 348, 384, 696, 971
BstDEI CTNAG 3 cut(s) 162, 273, 789
BstDSI CCRYGG 1 cut(s) 121
BstENI CCTNNNNNAGG 1 cut(s) 703
BstF5I GGATG 4 cut(s) 148, 253, 622, 761
BstHHI GCGC 1 cut(s) 229
BstKTI GATC 5 cut(s) 103, 129, 739, 915, 1060
BstMAI GTCTC 3 cut(s) 425, 569, 937
BstMBI GATC 5 cut(s) 100, 126, 736, 912, 1057
BstMWI GCNNNNNNNGC 2 cut(s) 359, 695
BstNSI RCATGY 1 cut(s) 855
BstPAI GACNNNNGTC 1 cut(s) 423
BstSFI CTRYAG 2 cut(s) 205, 480
BstV1I GCAGC 3 cut(s) 281, 362, 970
BstV2I GAAGAC 1 cut(s) 761
BstX2I RGATCY 1 cut(s) 126
BstYI RGATCY 1 cut(s) 126
Bsu15I ATCGAT 1 cut(s) 1056
BsuI GTATCC 1 cut(s) 828
BsuRI GGCC 3 cut(s) 597, 732, 921
BsuTUI ATCGAT 1 cut(s) 1056
BtgI CCRYGG 1 cut(s) 121
BtrI CACGTC 1 cut(s) 773
BtsCI GGATG 4 cut(s) 148, 253, 622, 761
BtsI GCAGTG 1 cut(s) 689
BtsIMutI CAGTG 4 cut(s) 202, 574, 689, 784
BveI ACCTGC 1 cut(s) 551
Cac8I GCNNGC 4 cut(s) 348, 384, 696, 971
CfoI GCGC 1 cut(s) 229
Cfr13I GGNCC 3 cut(s) 118, 595, 730
ClaI ATCGAT 1 cut(s) 1056
CseI GACGC 1 cut(s) 657
Csp6I GTAC 2 cut(s) 138, 376
CviAII CATG 6 cut(s) 122, 652, 734, 852, 936, 1067
CviQI GTAC 2 cut(s) 138, 376
DdeI CTNAG 3 cut(s) 162, 273, 789
DpnI GATC 5 cut(s) 102, 128, 738, 914, 1059
DpnII GATC 5 cut(s) 100, 126, 736, 912, 1057
DraI TTTAAA 1 cut(s) 586
Eam1104I CTCTTC 1 cut(s) 618
EarI CTCTTC 1 cut(s) 618
EciI GGCGGA 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 121
Eco147I AGGCCT 1 cut(s) 921
Eco31I GGTCTC 1 cut(s) 569
Eco47I GGWCC 1 cut(s) 118
Eco88I CYCGRG 1 cut(s) 458
EcoNI CCTNNNNNAGG 1 cut(s) 703
EcoRI GAATTC 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 121
EcoT22I ATGCAT 1 cut(s) 1023
ErhI CCWWGG 1 cut(s) 121
FaeI CATG 6 cut(s) 125, 655, 737, 855, 939, 1070
FatI CATG 6 cut(s) 121, 651, 733, 851, 935, 1066
FauI CCCGC 2 cut(s) 391, 702
FbaI TGATCA 3 cut(s) 100, 736, 912
Fnu4HI GCNGC 3 cut(s) 270, 351, 984
FokI GGATG 4 cut(s) 155, 260, 629, 748
Fsp4HI GCNGC 3 cut(s) 270, 351, 984
FspBI CTAG 2 cut(s) 236, 266
GlaI GCGC 1 cut(s) 228
GluI GCNGC 3 cut(s) 270, 351, 984
HaeIII GGCC 3 cut(s) 597, 732, 921
HgaI GACGC 1 cut(s) 657
HhaI GCGC 1 cut(s) 229
Hin1II CATG 6 cut(s) 125, 655, 737, 855, 939, 1070
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HinfI GANTC 7 cut(s) 41, 86, 407, 433, 456, 800, 883
HphI GGTGA 3 cut(s) 95, 269, 593
Hpy166II GTNNAC 4 cut(s) 202, 260, 455, 832
Hpy188I TCNGA 5 cut(s) 78, 85, 294, 807, 892
Hpy188III TCNNGA 5 cut(s) 236, 281, 392, 428, 610
Hpy8I GTNNAC 4 cut(s) 202, 260, 455, 832
Hpy99I CGWCG 1 cut(s) 651
HpyAV CCTTC 4 cut(s) 607, 709, 869, 1022
HpyCH4III ACNGT 6 cut(s) 26, 206, 422, 481, 779, 965
HpyCH4IV ACGT 3 cut(s) 262, 741, 772
HpyCH4V TGCA 8 cut(s) 33, 329, 350, 362, 560, 689, 846, 1021
HpyF10VI GCNNNNNNNGC 2 cut(s) 359, 695
HpyF3I CTNAG 3 cut(s) 162, 273, 789
HpySE526I ACGT 3 cut(s) 262, 741, 772
Hsp92II CATG 6 cut(s) 125, 655, 737, 855, 939, 1070
HspAI GCGC 1 cut(s) 227
Ksp22I TGATCA 3 cut(s) 100, 736, 912
Kzo9I GATC 5 cut(s) 100, 126, 736, 912, 1057
LmnI GCTCC 2 cut(s) 158, 1031
LpnPI CCDG 9 cut(s) 198, 377, 503, 546, 562, 736, 885, 955, 986
Lsp1109I GCAGC 3 cut(s) 281, 362, 970
LweI GCATC 2 cut(s) 171, 770
MaeI CTAG 2 cut(s) 236, 266
MaeII ACGT 3 cut(s) 262, 741, 772
MaeIII GTNAC 2 cut(s) 599, 773
MalI GATC 5 cut(s) 102, 128, 738, 914, 1059
MboI GATC 5 cut(s) 100, 126, 736, 912, 1057
MfeI CAATTG 1 cut(s) 363
MflI RGATCY 1 cut(s) 126
MluCI AATT 5 cut(s) 79, 363, 371, 469, 782
MlyI GAGTC 3 cut(s) 401, 427, 450
Mph1103I ATGCAT 1 cut(s) 1023
MseI TTAA 4 cut(s) 402, 585, 1005, 1072
MslI CAYNNNNRTG 2 cut(s) 207, 1065
MspA1I CMGCKG 2 cut(s) 98, 272
MunI CAATTG 1 cut(s) 363
MwoI GCNNNNNNNGC 2 cut(s) 359, 695
NcoI CCATGG 1 cut(s) 121
NdeII GATC 5 cut(s) 100, 126, 736, 912, 1057
NlaIII CATG 6 cut(s) 125, 655, 737, 855, 939, 1070
NlaIV GGNNCC 1 cut(s) 522
NmuCI GTSAC 2 cut(s) 599, 773
NsiI ATGCAT 1 cut(s) 1023
NspI RCATGY 1 cut(s) 855
OliI CACNNNNGTG 1 cut(s) 207
PaeR7I CTCGAG 1 cut(s) 458
PceI AGGCCT 1 cut(s) 921
PfeI GAWTC 4 cut(s) 41, 86, 800, 883
PflFI GACNNNGTC 1 cut(s) 191
PkrI GCNGC 3 cut(s) 271, 352, 985
PleI GAGTC 3 cut(s) 401, 427, 450
PpsI GAGTC 3 cut(s) 401, 427, 450
PshAI GACNNNNGTC 1 cut(s) 423
PspN4I GGNNCC 1 cut(s) 522
PspPI GGNCC 3 cut(s) 118, 595, 730
PspXI VCTCGAGB 1 cut(s) 458
PsuI RGATCY 1 cut(s) 126
PsyI GACNNNGTC 1 cut(s) 191
PvuII CAGCTG 1 cut(s) 272
RsaI GTAC 2 cut(s) 139, 377
RsaNI GTAC 2 cut(s) 138, 376
RseI CAYNNNNRTG 2 cut(s) 207, 1065
SaqAI TTAA 4 cut(s) 402, 585, 1005, 1072
SatI GCNGC 3 cut(s) 270, 351, 984
Sau3AI GATC 5 cut(s) 100, 126, 736, 912, 1057
Sau96I GGNCC 3 cut(s) 118, 595, 730
SchI GAGTC 3 cut(s) 401, 427, 450
SfaNI GCATC 2 cut(s) 171, 770
SfcI CTRYAG 2 cut(s) 205, 480
Sfr274I CTCGAG 1 cut(s) 458
SinI GGWCC 1 cut(s) 118
SlaI CTCGAG 1 cut(s) 458
SmiMI CAYNNNNRTG 2 cut(s) 207, 1065
SmlI CTYRAG 1 cut(s) 458
SmoI CTYRAG 1 cut(s) 458
Sse9I AATT 5 cut(s) 79, 363, 371, 469, 782
SseBI AGGCCT 1 cut(s) 921
SsiI CCGC 5 cut(s) 38, 96, 384, 416, 709
SspMI CTAG 2 cut(s) 236, 266
StuI AGGCCT 1 cut(s) 921
StyI CCWWGG 1 cut(s) 121
TaaI ACNGT 6 cut(s) 26, 206, 422, 481, 779, 965
TaiI ACGT 3 cut(s) 265, 744, 775
TaqI TCGA 3 cut(s) 459, 646, 1056
TasI AATT 5 cut(s) 79, 363, 371, 469, 782
TatI WGTACW 1 cut(s) 375
TfiI GAWTC 4 cut(s) 41, 86, 800, 883
Tru1I TTAA 4 cut(s) 402, 585, 1005, 1072
Tru9I TTAA 4 cut(s) 402, 585, 1005, 1072
TscAI CASTG 4 cut(s) 209, 581, 696, 784
TseFI GTSAC 2 cut(s) 599, 773
TseI GCWGC 3 cut(s) 269, 350, 983
Tsp45I GTSAC 2 cut(s) 599, 773
TspDTI ATGAA 4 cut(s) 482, 633, 670, 1026
TspGWI ACGGA 2 cut(s) 155, 513
TspRI CASTG 4 cut(s) 209, 581, 696, 784
Tth111I GACNNNGTC 1 cut(s) 191
VpaK11BI GGWCC 1 cut(s) 118
XagI CCTNNNNNAGG 1 cut(s) 703
XapI RAATTY 2 cut(s) 79, 469
XbaI TCTAGA 1 cut(s) 235
XceI RCATGY 1 cut(s) 855
XhoI CTCGAG 1 cut(s) 458
XspI CTAG 2 cut(s) 236, 266
Zsp2I ATGCAT 1 cut(s) 1023
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.