pycom01g18790

Putative serine esterase (DUF676)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0015180
Physical Location & Seq
Reverse (-)
17644941 .. 17648306
3366 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g18790.7

Sequence Viewer

Length: 1266 bp
ATGTCAATTCACAAACTTACTTTAGAATCTATATGTTCTTCCGACGTCCCACAACATAAAAGCTCTCCTCCTTTTCTTTTTCCTCACCCTCTCTCCAATCTCCCCAATCGCTTCCGATTTTCTGCTTCCGGCCACCGTTGTTCTCAGTCAATGCCCGTAGCCGAACGGCGGTCAGTAGTAGCTATGGAAAACGGCGTCGTAGAGAACGGAGTCTGCTCCTTGGAGTCGGCTAACGGGAGTCGCGATGTCTGGAGCTCGAAGGAGTCAGAATCTTCCTCCGCTGATCATCTAGTCGTCATGGTCCATGGAATTATGGGAACTGCCGCGGATTGGAAGTTTGGGGCGGAGCAATTTGTTAAAACACTTCCAGATAAAGTTATTGTTCATTGTAGTGAACGGAATGTCTCTACGTTGACTCTAGATGGTGTGGATGTAATGGGGGAGCGATTGGCTGAGGAGGTTATCGAACTGACTCAAAAAAAGCCTAATCTATGTAAGATCTCATTTATTGGACATTCTGTCGGAGGATTAGTGGCAAGATATGCAATTGGGAGGCTGTATAGACCCCCTAAAAGTGACAATACGGAGCATTCATCTCCTAATGGACGTGAAGAGGATTCAAGGAGTACATTAGCTGGCTTGGAGCCTATGAACTTTATTACTGTTGCTACACCTCATCTTGGATCAAGGGGTAACAAGCAGGTACCATTCCTTTTTGGTGTGCCTGCCTTCGAAAAACTTGCTAGTGCAGTTATTCATTTGATATTTAGGAGGACAGGTCGGCATCTTTTTCTTAATGATGACGACAATGGGAAGCCTCCACTGCTTAAACGCATGATAGAAGATTGTGATGGTTGTTATTTCATGTCTGCATTGCGTAGTTTTAAGCGAAGGGTGGTGTATTCAAATGTGGGCTATGACCATATTGTCGGCTGGAAAACATCATGTATCAGACGTAATAGTGAACTTCCAAAGTGGGAAAATACTATTGACGAAAAATATCCGCATATTGTTTATGAAGAACACTGCAAGGCCTATGACGCTGAGCAGTGTGAGCCTACTTCAGCGGAGGATGGTGGCTCTGACGAGCTTGAAGAGGAATTATTGAAAGGCCTATCTCGCGTCTCCTGGGAAAAAGTAGATGTTAGTTTCCACAGCAGCAGACACAGATTTGCTGCTCATAGTGTCATTCAGGTCAAAAATAAAAGTGTACATATAGAAGGTGAAGATGTCATACGCCATATAATGGATCATTTCCTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF676

Protein Analysis

422

Amino Acids

47.2

Weight (kDa)

6.5

Isoelectric Point (pI)

55.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015180)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51180 AT5G51180
fragaria_vesca FvH4_7g26960
malus_domestica MD01G1177400.v1.1 MD07G1249100.v1.1
prunus_persica Prupe.2G272700_v2.0.a1
pyrus_communis pycom01g18790 pycom07g22230
rosa_chinensis RchiOBHm_Chr1g0373671
rosa_laevigata RLG00000026808
rosa_roxburghii Rroxscaffold_4G00284070
rosa_rugosa Rorug01G0378900
rosa_samantha Rh1AG388300 Rh1CG365600 Rh1DG383100
rosa_wichuraiana Rw1G034690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 926
AatII GACGTC 1 cut(s) 48
Acc36I ACCTGC 1 cut(s) 691
Acc65I GGTACC 1 cut(s) 703
AccB1I GGYRCC 1 cut(s) 703
AccB7I CCANNNNNTGG 1 cut(s) 1246
AccII CGCG 3 cut(s) 243, 326, 1122
AciI CCGC 7 cut(s) 169, 279, 324, 326, 344, 1004, 1067
AclWI GGATC 2 cut(s) 691, 1257
AcoI YGGCCR 1 cut(s) 130
AcuI CTGAAG 1 cut(s) 1047
AcyI GRCGYC 2 cut(s) 45, 195
AfaI GTAC 3 cut(s) 628, 705, 1212
AfiI CCNNNNNNNGG 4 cut(s) 168, 330, 680, 1246
AgsI TTSAA 4 cut(s) 621, 906, 1094, 1108
AhdI GACNNNNNGTC 1 cut(s) 518
AjiI CACGTC 1 cut(s) 608
AjnI CCWGG 1 cut(s) 1127
AluBI AGCT 5 cut(s) 63, 182, 255, 635, 1090
AluI AGCT 5 cut(s) 63, 182, 255, 635, 1090
Alw21I GWGCWC 1 cut(s) 257
Alw26I GTCTC 2 cut(s) 409, 1129
AlwI GGATC 2 cut(s) 691, 1257
AoxI GGCC 3 cut(s) 130, 1032, 1111
ApeKI GCWGC 2 cut(s) 1158, 1175
Asp718I GGTACC 1 cut(s) 703
AspS9I GGNCC 1 cut(s) 301
AsuHPI GGTGA 2 cut(s) 77, 1235
AsuII TTCGAA 1 cut(s) 732
AvaII GGWCC 1 cut(s) 301
BanI GGYRCC 1 cut(s) 703
BanII GRGCYC 1 cut(s) 257
BarI GAAGNNNNNNTAC 2 cut(s) 1218, 1250
Bbv12I GWGCWC 1 cut(s) 257
BbvCI CCTCAGC 1 cut(s) 453
BbvI GCAGC 2 cut(s) 1162, 1170
BccI CCATC 3 cut(s) 416, 845, 1067
BceAI ACGGC 2 cut(s) 182, 208
BcgI CGANNNNNNTGC 2 cut(s) 722, 756
BciT130I CCWGG 1 cut(s) 1129
BclI TGATCA 1 cut(s) 283
BcoDI GTCTC 2 cut(s) 409, 1129
BfaI CTAG 3 cut(s) 290, 419, 744
BfuAI ACCTGC 1 cut(s) 691
BglII AGATCT 1 cut(s) 498
BisI GCNGC 3 cut(s) 324, 1159, 1176
BlpI GCTNAGC 1 cut(s) 1044
BlsI GCNGC 3 cut(s) 325, 1160, 1177
Bme1390I CCNGG 1 cut(s) 1129
Bme18I GGWCC 1 cut(s) 301
BmeRI GACNNNNNGTC 1 cut(s) 518
BmgBI CACGTC 1 cut(s) 608
BmgT120I GGNCC 1 cut(s) 301
BmiI GGNNCC 2 cut(s) 645, 705
BmrFI CCNGG 1 cut(s) 1129
BmsI GCATC 1 cut(s) 793
BpmI CTGGAG 1 cut(s) 271
Bpu10I CCTNAGC 1 cut(s) 453
Bpu1102I GCTNAGC 1 cut(s) 1044
Bpu14I TTCGAA 1 cut(s) 732
BpuEI CTTGAG 1 cut(s) 1244
BsaHI GRCGYC 2 cut(s) 45, 195
BsaJI CCNNGG 4 cut(s) 219, 304, 324, 1128
BsaXI ACNNNNNCTCC 6 cut(s) 77, 107, 516, 546, 763, 793
Bsc4I CCNNNNNNNGG 4 cut(s) 168, 330, 680, 1246
Bse3DI GCAATG 1 cut(s) 872
BseBI CCWGG 1 cut(s) 1129
BseDI CCNNGG 4 cut(s) 219, 304, 324, 1128
BseGI GGATG 2 cut(s) 436, 1078
BseLI CCNNNNNNNGG 4 cut(s) 168, 330, 680, 1246
BseMI GCAATG 1 cut(s) 872
BseMII CTCAG 3 cut(s) 158, 444, 1035
BseRI GAGGAG 2 cut(s) 57, 470
BseXI GCAGC 2 cut(s) 1162, 1170
BsgI GTGCAG 1 cut(s) 768
Bsh1236I CGCG 3 cut(s) 243, 326, 1122
BshFI GGCC 3 cut(s) 132, 1034, 1113
BshNI GGYRCC 1 cut(s) 703
BsiHKAI GWGCWC 1 cut(s) 257
BsiSI CCGG 1 cut(s) 129
BslFI GGGAC 1 cut(s) 32
BslI CCNNNNNNNGG 4 cut(s) 168, 330, 680, 1246
BsmAI GTCTC 2 cut(s) 409, 1129
BsmBI CGTCTC 1 cut(s) 1129
BsmFI GGGAC 1 cut(s) 32
BsmI GAATGC 1 cut(s) 589
BsnI GGCC 3 cut(s) 132, 1034, 1113
Bsp119I TTCGAA 1 cut(s) 732
Bsp1286I GDGCHC 1 cut(s) 257
Bsp1407I TGTACA 1 cut(s) 1210
Bsp143I GATC 4 cut(s) 283, 498, 683, 1249
Bsp1720I GCTNAGC 1 cut(s) 1044
Bsp19I CCATGG 1 cut(s) 304
Bsp68I TCGCGA 1 cut(s) 243
BspACI CCGC 7 cut(s) 169, 279, 324, 326, 344, 1004, 1067
BspANI GGCC 3 cut(s) 132, 1034, 1113
BspCNI CTCAG 3 cut(s) 157, 445, 1036
BspFNI CGCG 3 cut(s) 243, 326, 1122
BspLI GGNNCC 2 cut(s) 645, 705
BspMI ACCTGC 1 cut(s) 691
BspPI GGATC 2 cut(s) 691, 1257
BspT104I TTCGAA 1 cut(s) 732
BspT107I GGYRCC 1 cut(s) 703
BsrDI GCAATG 1 cut(s) 872
BsrGI TGTACA 1 cut(s) 1210
BssECI CCNNGG 4 cut(s) 219, 304, 324, 1128
BssMI GATC 4 cut(s) 283, 498, 683, 1249
BssNI GRCGYC 2 cut(s) 45, 195
BssT1I CCWWGG 2 cut(s) 219, 304
Bst2UI CCWGG 1 cut(s) 1129
Bst4CI ACNGT 2 cut(s) 137, 664
Bst6I CTCTTC 2 cut(s) 606, 1089
BstACI GRCGYC 2 cut(s) 45, 195
BstAPI GCANNNNNTGC 1 cut(s) 542
BstAUI TGTACA 1 cut(s) 1210
BstBI TTCGAA 1 cut(s) 732
BstC8I GCNNGC 2 cut(s) 637, 726
BstDEI CTNAG 3 cut(s) 144, 453, 1044
BstDSI CCRYGG 2 cut(s) 304, 324
BstF5I GGATG 2 cut(s) 436, 1078
BstFNI CGCG 3 cut(s) 243, 326, 1122
BstKTI GATC 4 cut(s) 286, 501, 686, 1252
BstMAI GTCTC 2 cut(s) 409, 1129
BstMBI GATC 4 cut(s) 283, 498, 683, 1249
BstMWI GCNNNNNNNGC 5 cut(s) 542, 823, 1040, 1054, 1119
BstNI CCWGG 1 cut(s) 1129
BstSCI CCNGG 1 cut(s) 1127
BstUI CGCG 3 cut(s) 243, 326, 1122
BstV1I GCAGC 2 cut(s) 1162, 1170
BstX2I RGATCY 1 cut(s) 498
BstYI RGATCY 1 cut(s) 498
BsuRI GGCC 3 cut(s) 132, 1034, 1113
BtgI CCRYGG 2 cut(s) 304, 324
BtgZI GCGATG 1 cut(s) 258
BtrI CACGTC 1 cut(s) 608
BtsCI GGATG 2 cut(s) 436, 1078
BtsI GCAGTG 3 cut(s) 821, 1024, 1055
BtsIMutI CAGTG 3 cut(s) 821, 1024, 1055
BtuMI TCGCGA 1 cut(s) 243
BveI ACCTGC 1 cut(s) 691
Cac8I GCNNGC 2 cut(s) 637, 726
Cfr13I GGNCC 1 cut(s) 301
Cfr42I CCGCGG 1 cut(s) 327
CseI GACGC 3 cut(s) 184, 1049, 1111
Csp6I GTAC 3 cut(s) 627, 704, 1211
CviAII CATG 5 cut(s) 298, 305, 835, 865, 945
CviQI GTAC 3 cut(s) 627, 704, 1211
DdeI CTNAG 3 cut(s) 144, 453, 1044
DpnI GATC 4 cut(s) 285, 500, 685, 1251
DpnII GATC 4 cut(s) 283, 498, 683, 1249
DrdI GACNNNNNNGTC 1 cut(s) 926
DriI GACNNNNNGTC 1 cut(s) 518
DseDI GACNNNNNNGTC 1 cut(s) 926
EaeI YGGCCR 1 cut(s) 130
Eam1104I CTCTTC 2 cut(s) 606, 1089
Eam1105I GACNNNNNGTC 1 cut(s) 518
EarI CTCTTC 2 cut(s) 606, 1089
EciI GGCGGA 1 cut(s) 359
Ecl136II GAGCTC 1 cut(s) 255
Eco130I CCWWGG 2 cut(s) 219, 304
Eco147I AGGCCT 2 cut(s) 1034, 1113
Eco24I GRGCYC 1 cut(s) 257
Eco47I GGWCC 1 cut(s) 301
Eco53kI GAGCTC 1 cut(s) 255
Eco57I CTGAAG 1 cut(s) 1047
EcoICRI GAGCTC 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 1127
EcoT14I CCWWGG 2 cut(s) 219, 304
EcoT38I GRGCYC 1 cut(s) 257
ErhI CCWWGG 2 cut(s) 219, 304
Esp3I CGTCTC 1 cut(s) 1129
FaeI CATG 5 cut(s) 301, 308, 838, 868, 948
FaqI GGGAC 1 cut(s) 32
FatI CATG 5 cut(s) 297, 304, 834, 864, 944
FbaI TGATCA 1 cut(s) 283
Fnu4HI GCNGC 3 cut(s) 324, 1159, 1176
FokI GGATG 2 cut(s) 443, 1085
FriOI GRGCYC 1 cut(s) 257
Fsp4HI GCNGC 3 cut(s) 324, 1159, 1176
FspBI CTAG 3 cut(s) 290, 419, 744
GluI GCNGC 3 cut(s) 324, 1159, 1176
GsuI CTGGAG 1 cut(s) 271
HaeIII GGCC 3 cut(s) 132, 1034, 1113
HapII CCGG 1 cut(s) 129
HgaI GACGC 3 cut(s) 184, 1049, 1111
Hin1I GRCGYC 2 cut(s) 45, 195
Hin1II CATG 5 cut(s) 301, 308, 838, 868, 948
HincII GTYRAC 1 cut(s) 414
HindII GTYRAC 1 cut(s) 414
HinfI GANTC 9 cut(s) 26, 210, 224, 238, 263, 269, 415, 472, 617
HpaII CCGG 1 cut(s) 129
HphI GGTGA 2 cut(s) 77, 1235
Hpy166II GTNNAC 4 cut(s) 395, 414, 965, 1211
Hpy188I TCNGA 6 cut(s) 43, 116, 268, 524, 953, 1084
Hpy188III TCNNGA 4 cut(s) 242, 250, 368, 419
Hpy8I GTNNAC 4 cut(s) 395, 414, 965, 1211
Hpy99I CGWCG 2 cut(s) 47, 200
HpyAV CCTTC 4 cut(s) 253, 739, 885, 1214
HpyCH4III ACNGT 2 cut(s) 137, 664
HpyCH4IV ACGT 4 cut(s) 45, 410, 607, 955
HpyCH4V TGCA 4 cut(s) 545, 749, 872, 1029
HpyF10VI GCNNNNNNNGC 5 cut(s) 542, 823, 1040, 1054, 1119
HpyF3I CTNAG 3 cut(s) 144, 453, 1044
HpySE526I ACGT 4 cut(s) 45, 410, 607, 955
Hsp92I GRCGYC 2 cut(s) 45, 195
Hsp92II CATG 5 cut(s) 301, 308, 838, 868, 948
KpnI GGTACC 1 cut(s) 707
Ksp22I TGATCA 1 cut(s) 283
KspI CCGCGG 1 cut(s) 327
Kzo9I GATC 4 cut(s) 283, 498, 683, 1249
LmnI GCTCC 6 cut(s) 221, 252, 346, 442, 586, 643
Lsp1109I GCAGC 2 cut(s) 1162, 1170
LweI GCATC 1 cut(s) 793
MaeI CTAG 3 cut(s) 290, 419, 744
MaeII ACGT 4 cut(s) 45, 410, 607, 955
MaeIII GTNAC 2 cut(s) 575, 692
MalI GATC 4 cut(s) 285, 500, 685, 1251
MboI GATC 4 cut(s) 283, 498, 683, 1249
MboII GAAGA 7 cut(s) 30, 264, 623, 854, 1031, 1106, 1238
MfeI CAATTG 1 cut(s) 546
MflI RGATCY 1 cut(s) 498
MhlI GDGCHC 1 cut(s) 257
MluCI AATT 5 cut(s) 6, 309, 350, 546, 1100
MlyI GAGTC 6 cut(s) 219, 233, 247, 272, 409, 466
MmeI TCCRAC 2 cut(s) 66, 502
MseI TTAA 4 cut(s) 357, 795, 828, 885
MslI CAYNNNNRTG 1 cut(s) 390
MspA1I CMGCKG 3 cut(s) 281, 326, 1067
MspI CCGG 1 cut(s) 129
MspR9I CCNGG 1 cut(s) 1129
MunI CAATTG 1 cut(s) 546
Mva1269I GAATGC 1 cut(s) 589
MvaI CCWGG 1 cut(s) 1129
MvnI CGCG 3 cut(s) 243, 326, 1122
MwoI GCNNNNNNNGC 5 cut(s) 542, 823, 1040, 1054, 1119
NcoI CCATGG 1 cut(s) 304
NdeII GATC 4 cut(s) 283, 498, 683, 1249
NlaIII CATG 5 cut(s) 301, 308, 838, 868, 948
NlaIV GGNNCC 2 cut(s) 645, 705
NmuCI GTSAC 1 cut(s) 575
NruI TCGCGA 1 cut(s) 243
NspV TTCGAA 1 cut(s) 732
PceI AGGCCT 2 cut(s) 1034, 1113
PcsI WCGNNNNNNNCGW 1 cut(s) 240
PctI GAATGC 1 cut(s) 589
PfeI GAWTC 3 cut(s) 26, 269, 617
PflMI CCANNNNNTGG 1 cut(s) 1246
PkrI GCNGC 3 cut(s) 325, 1160, 1177
PleI GAGTC 6 cut(s) 218, 232, 246, 271, 409, 466
PpsI GAGTC 6 cut(s) 218, 232, 246, 271, 409, 466
Psp124BI GAGCTC 1 cut(s) 257
Psp6I CCWGG 1 cut(s) 1127
PspGI CCWGG 1 cut(s) 1127
PspN4I GGNNCC 2 cut(s) 645, 705
PspPI GGNCC 1 cut(s) 301
PsuI RGATCY 1 cut(s) 498
RruI TCGCGA 1 cut(s) 243
RsaI GTAC 3 cut(s) 628, 705, 1212
RsaNI GTAC 3 cut(s) 627, 704, 1211
RseI CAYNNNNRTG 1 cut(s) 390
SacI GAGCTC 1 cut(s) 257
SacII CCGCGG 1 cut(s) 327
SaqAI TTAA 4 cut(s) 357, 795, 828, 885
SatI GCNGC 3 cut(s) 324, 1159, 1176
Sau3AI GATC 4 cut(s) 283, 498, 683, 1249
Sau96I GGNCC 1 cut(s) 301
SchI GAGTC 6 cut(s) 219, 233, 247, 272, 409, 466
ScrFI CCNGG 1 cut(s) 1129
SduI GDGCHC 1 cut(s) 257
SfaNI GCATC 1 cut(s) 793
Sfr303I CCGCGG 1 cut(s) 327
SfuI TTCGAA 1 cut(s) 732
SgrBI CCGCGG 1 cut(s) 327
SinI GGWCC 1 cut(s) 301
SmiMI CAYNNNNRTG 1 cut(s) 390
SmlI CTYRAG 1 cut(s) 1259
SmoI CTYRAG 1 cut(s) 1259
Sse9I AATT 5 cut(s) 6, 309, 350, 546, 1100
SseBI AGGCCT 2 cut(s) 1034, 1113
SsiI CCGC 7 cut(s) 169, 279, 324, 326, 344, 1004, 1067
SspMI CTAG 3 cut(s) 290, 419, 744
SstI GAGCTC 1 cut(s) 257
StuI AGGCCT 2 cut(s) 1034, 1113
StyD4I CCNGG 1 cut(s) 1127
StyI CCWWGG 2 cut(s) 219, 304
TaaI ACNGT 2 cut(s) 137, 664
TaiI ACGT 4 cut(s) 48, 413, 610, 958
TaqI TCGA 3 cut(s) 257, 465, 732
TasI AATT 5 cut(s) 6, 309, 350, 546, 1100
TatI WGTACW 2 cut(s) 626, 1210
TauI GCSGC 1 cut(s) 326
TfiI GAWTC 3 cut(s) 26, 269, 617
Tru1I TTAA 4 cut(s) 357, 795, 828, 885
Tru9I TTAA 4 cut(s) 357, 795, 828, 885
TscAI CASTG 3 cut(s) 828, 1031, 1055
TseFI GTSAC 1 cut(s) 575
TseI GCWGC 2 cut(s) 1158, 1175
Tsp45I GTSAC 1 cut(s) 575
TspDTI ATGAA 6 cut(s) 374, 582, 665, 746, 853, 1032
TspGWI ACGGA 3 cut(s) 222, 412, 599
TspRI CASTG 3 cut(s) 828, 1031, 1055
Van91I CCANNNNNTGG 1 cut(s) 1246
VpaK11BI GGWCC 1 cut(s) 301
XbaI TCTAGA 1 cut(s) 418
XspI CTAG 3 cut(s) 290, 419, 744
ZraI GACGTC 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.