Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016217

Physical Location & Seq

Genomic Coordinates Reverse (-)

21001144 .. 21003286

Gene Structure 2143 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G51700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGAAGTAGGATCTGCAACGAAGAAGCTTCAGTGCCAACGTATTGGCTGCAACGCCATGTTCACCGATGACGACAATCCTCAAGGTTCTTGTCAATTTCATGCTTCCGGACCATTTTTTCACGACGGAATGAAAGAGTGGAGCTGCTGCAAGCAAAGAAGTCATGATTTCAGTTTGTTCTTGGAAATTCCAGGATGTAAAACAGGTAAACACACAACTGAGAAACCAGTTCTGGCCAAATCGGTTCCAAAACATCCTGTTGCGGCTCCTACTTCATCTCCAGATGCCAATGCAGCAACAAAAGACTCTTGCTCCAGATGCCGGCAAGGCTTCTTCTGCTCAGACCATGGATCCCAACCCAAAGAACAGATCAAGCAGACCCTGAACACACCGGGACAAGCAGAAGAAGAAAAAATTGAACCCTTAGCGCCTCCAGTACAAAAGGCTGTGATAGACATTAATCAACCGCAAGTCTGCAAAAACAAAGGATGTGGCCAAACATTCAAAGAGAGAGACAATCATGAGACTGCATGTAGCCATCATCCAGGTCCTGCGGTCTTCCACGACAGACTGAGAGGGTGGAAATGTTGCGATGTTCACGTGAAGGAGTTCGACGAGTTCATGGAAATACCTCCTTGCACTAAAGGATGGCATAGCAGCAGCCCTGATCCGGCGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0002679 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009814 GO:0009816 GO:0009817 GO:0009987 GO:0012501 GO:0017016 GO:0017048 GO:0019899 GO:0031072 GO:0031267 GO:0031647 GO:0033554 GO:0034050 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0045730 GO:0046872 GO:0046914 GO:0050821 GO:0050832 GO:0050896 GO:0051020 GO:0051704 GO:0051707 GO:0051716 GO:0051879 GO:0065007 GO:0065008 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

CHORD

Protein Analysis

226

Amino Acids

24.96

Weight (kDa)

6.84

Isoelectric Point (pI)

50.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CHORD	PF04968	1 - 28	4.6e-09	CHORD
CHORD	PF04968	115 - 175	5e-24	CHORD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51700 AT5G51700
fragaria_vesca	FvH4_7g28300 FvH4_7g28300
malus_domestica	MD01G1187300.v1.1 MD07G1259600.v1.1
prunus_persica	Prupe.2G283700_v2.0.a1
pyrus_communis	pycom07g23300
rosa_chinensis	RchiOBHm_Chr1g0375271
rosa_laevigata	RLG00000026672
rosa_multiflora	Rmu_sc0000554.1_g000035
rosa_roxburghii	Rroxscaffold_4G00282880
rosa_samantha	Rh1AG400400 Rh1BG364000
rosa_wichuraiana	Rw1G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	107
AciI	CCGC	4 cut(s)	263, 467, 554, 674
AclWI	GGATC	4 cut(s)	19, 345, 358, 662
AcoI	YGGCCR	2 cut(s)	234, 493
AcsI	RAATTY	1 cut(s)	186
AcuI	CTGAAG	1 cut(s)	14
AcvI	CACGTG	1 cut(s)	601
AfaI	GTAC	1 cut(s)	438
AfiI	CCNNNNNNNGG	2 cut(s)	321, 670
AgsI	TTSAA	2 cut(s)	419, 505
AjnI	CCWGG	2 cut(s)	190, 544
AluBI	AGCT	2 cut(s)	28, 144
AluI	AGCT	2 cut(s)	28, 144
Alw26I	GTCTC	2 cut(s)	507, 518
AlwI	GGATC	4 cut(s)	19, 345, 358, 662
AlwNI	CAGNNNCTG	2 cut(s)	382, 551
Aor13HI	TCCGGA	1 cut(s)	107
AoxI	GGCC	2 cut(s)	234, 493
ApeKI	GCWGC	6 cut(s)	48, 144, 147, 293, 657, 660
ApoI	RAATTY	1 cut(s)	186
AseI	ATTAAT	1 cut(s)	459
Asp700I	GAANNNNTTC	1 cut(s)	608
AspLEI	GCGC	1 cut(s)	430
AspS9I	GGNCC	2 cut(s)	110, 548
AsuC2I	CCSGG	1 cut(s)	393
AsuHPI	GGTGA	1 cut(s)	55
AvaII	GGWCC	2 cut(s)	110, 548
BalI	TGGCCA	2 cut(s)	236, 495
BamHI	GGATCC	1 cut(s)	350
BbrPI	CACGTG	1 cut(s)	601
BbsI	GAAGAC	1 cut(s)	550
BbvI	GCAGC	6 cut(s)	35, 131, 134, 305, 669, 672
BccI	CCATC	2 cut(s)	546, 642
BciT130I	CCWGG	2 cut(s)	192, 546
BcnI	CCSGG	1 cut(s)	393
BcoDI	GTCTC	2 cut(s)	507, 518
BfoI	RGCGCY	1 cut(s)	431
BglI	GCCNNNNNGGC	1 cut(s)	327
BisI	GCNGC	7 cut(s)	49, 145, 148, 264, 294, 658, 661
BlsI	GCNGC	7 cut(s)	50, 146, 149, 265, 295, 659, 662
Bme1390I	CCNGG	3 cut(s)	192, 393, 546
Bme18I	GGWCC	2 cut(s)	110, 548
BmgT120I	GGNCC	2 cut(s)	110, 548
BmiI	GGNNCC	3 cut(s)	246, 267, 352
BmrFI	CCNGG	3 cut(s)	192, 393, 546
BmsI	GCATC	2 cut(s)	274, 308
BpiI	GAAGAC	1 cut(s)	550
BpmI	CTGGAG	3 cut(s)	264, 298, 417
Bpu10I	CCTNAGC	1 cut(s)	424
BpuEI	CTTGAG	1 cut(s)	66
BpuMI	CCSGG	1 cut(s)	393
BsaAI	YACGTR	1 cut(s)	601
BsaJI	CCNNGG	1 cut(s)	346
BsaWI	WCCGGW	1 cut(s)	107
BsaXI	ACNNNNNCTCC	4 cut(s)	262, 292, 296, 326
Bsc4I	CCNNNNNNNGG	2 cut(s)	321, 670
Bse118I	RCCGGY	1 cut(s)	321
Bse1I	ACTGG	2 cut(s)	227, 434
BseAI	TCCGGA	1 cut(s)	107
BseBI	CCWGG	2 cut(s)	192, 546
BseDI	CCNNGG	1 cut(s)	346
BseGI	GGATG	5 cut(s)	200, 253, 494, 541, 653
BseLI	CCNNNNNNNGG	2 cut(s)	321, 670
BseMII	CTCAG	3 cut(s)	210, 354, 563
BseNI	ACTGG	2 cut(s)	227, 434
BseXI	GCAGC	6 cut(s)	35, 131, 134, 305, 669, 672
BshFI	GGCC	2 cut(s)	236, 495
BsiSI	CCGG	4 cut(s)	108, 322, 392, 671
BslFI	GGGAC	1 cut(s)	408
BslI	CCNNNNNNNGG	2 cut(s)	321, 670
BsmAI	GTCTC	2 cut(s)	507, 518
BsmFI	GGGAC	1 cut(s)	408
BsnI	GGCC	2 cut(s)	236, 495
Bsp13I	TCCGGA	1 cut(s)	107
Bsp143I	GATC	4 cut(s)	11, 350, 369, 667
Bsp19I	CCATGG	1 cut(s)	346
BspACI	CCGC	4 cut(s)	263, 467, 554, 674
BspANI	GGCC	2 cut(s)	236, 495
BspCNI	CTCAG	3 cut(s)	211, 353, 564
BspEI	TCCGGA	1 cut(s)	107
BspHI	TCATGA	2 cut(s)	163, 520
BspLI	GGNNCC	3 cut(s)	246, 267, 352
BspPI	GGATC	4 cut(s)	19, 345, 358, 662
BsrFI	RCCGGY	1 cut(s)	321
BsrI	ACTGG	2 cut(s)	227, 434
BssAI	RCCGGY	1 cut(s)	321
BssECI	CCNNGG	1 cut(s)	346
BssMI	GATC	4 cut(s)	11, 350, 369, 667
BssT1I	CCWWGG	1 cut(s)	346
Bst2UI	CCWGG	2 cut(s)	192, 546
BstBAI	YACGTR	1 cut(s)	601
BstC8I	GCNNGC	2 cut(s)	152, 323
BstDEI	CTNAG	4 cut(s)	219, 340, 424, 572
BstDSI	CCRYGG	1 cut(s)	346
BstF5I	GGATG	5 cut(s)	200, 253, 494, 541, 653
BstH2I	RGCGCY	1 cut(s)	431
BstHHI	GCGC	1 cut(s)	430
BstKTI	GATC	4 cut(s)	14, 353, 372, 670
BstMAI	GTCTC	2 cut(s)	507, 518
BstMBI	GATC	4 cut(s)	11, 350, 369, 667
BstMWI	GCNNNNNNNGC	4 cut(s)	293, 318, 327, 336
BstNI	CCWGG	2 cut(s)	192, 546
BstNSI	RCATGY	1 cut(s)	534
BstSCI	CCNGG	3 cut(s)	190, 391, 544
BstV1I	GCAGC	6 cut(s)	35, 131, 134, 305, 669, 672
BstV2I	GAAGAC	1 cut(s)	550
BstX2I	RGATCY	2 cut(s)	11, 350
BstXI	CCANNNNNNTGG	1 cut(s)	44
BstYI	RGATCY	2 cut(s)	11, 350
BsuRI	GGCC	2 cut(s)	236, 495
BtgI	CCRYGG	1 cut(s)	346
BtgZI	GCGATG	1 cut(s)	606
BtsCI	GGATG	5 cut(s)	200, 253, 494, 541, 653
BtsIMutI	CAGTG	1 cut(s)	38
Cac8I	GCNNGC	2 cut(s)	152, 323
CaiI	CAGNNNCTG	2 cut(s)	382, 551
CciI	TCATGA	2 cut(s)	163, 520
CfoI	GCGC	1 cut(s)	430
Cfr10I	RCCGGY	1 cut(s)	321
Cfr13I	GGNCC	2 cut(s)	110, 548
Csp6I	GTAC	1 cut(s)	437
CspCI	CAANNNNNGTGG	2 cut(s)	472, 507
CviAII	CATG	7 cut(s)	58, 101, 164, 347, 521, 531, 622
CviQI	GTAC	1 cut(s)	437
DdeI	CTNAG	4 cut(s)	219, 340, 424, 572
DpnI	GATC	4 cut(s)	13, 352, 371, 669
DpnII	GATC	4 cut(s)	11, 350, 369, 667
EaeI	YGGCCR	2 cut(s)	234, 493
Eco130I	CCWWGG	1 cut(s)	346
Eco47I	GGWCC	2 cut(s)	110, 548
Eco57I	CTGAAG	1 cut(s)	14
Eco72I	CACGTG	1 cut(s)	601
EcoO109I	RGGNCCY	1 cut(s)	548
EcoRII	CCWGG	2 cut(s)	190, 544
EcoT14I	CCWWGG	1 cut(s)	346
ErhI	CCWWGG	1 cut(s)	346
FaeI	CATG	7 cut(s)	61, 104, 167, 350, 524, 534, 625
FaiI	YATR	8 cut(s)	59, 102, 165, 348, 522, 532, 623, 654
FaqI	GGGAC	1 cut(s)	408
FatI	CATG	7 cut(s)	57, 100, 163, 346, 520, 530, 621
Fnu4HI	GCNGC	7 cut(s)	49, 145, 148, 264, 294, 658, 661
FokI	GGATG	5 cut(s)	207, 240, 501, 528, 660
Fsp4HI	GCNGC	7 cut(s)	49, 145, 148, 264, 294, 658, 661
GlaI	GCGC	1 cut(s)	429
GluI	GCNGC	7 cut(s)	49, 145, 148, 264, 294, 658, 661
GsuI	CTGGAG	3 cut(s)	264, 298, 417
HaeII	RGCGCY	1 cut(s)	431
HaeIII	GGCC	2 cut(s)	236, 495
HapII	CCGG	4 cut(s)	108, 322, 392, 671
HhaI	GCGC	1 cut(s)	430
Hin1II	CATG	7 cut(s)	61, 104, 167, 350, 524, 534, 625
Hin6I	GCGC	1 cut(s)	428
HinP1I	GCGC	1 cut(s)	428
HindIII	AAGCTT	1 cut(s)	26
HinfI	GANTC	1 cut(s)	305
HpaII	CCGG	4 cut(s)	108, 322, 392, 671
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	3 cut(s)	63, 209, 598
Hpy188I	TCNGA	2 cut(s)	343, 680
Hpy188III	TCNNGA	6 cut(s)	108, 122, 164, 281, 315, 521
Hpy8I	GTNNAC	3 cut(s)	63, 209, 598
Hpy99I	CGWCG	2 cut(s)	128, 617
HpyAV	CCTTC	1 cut(s)	598
HpyCH4IV	ACGT	2 cut(s)	40, 600
HpyCH4V	TGCA	7 cut(s)	17, 51, 150, 293, 477, 530, 639
HpyF10VI	GCNNNNNNNGC	4 cut(s)	293, 318, 327, 336
HpyF3I	CTNAG	4 cut(s)	219, 340, 424, 572
HpySE526I	ACGT	2 cut(s)	40, 600
Hsp92II	CATG	7 cut(s)	61, 104, 167, 350, 524, 534, 625
HspAI	GCGC	1 cut(s)	428
Kpn2I	TCCGGA	1 cut(s)	107
KroI	GCCGGC	1 cut(s)	321
KroNI	GCCGGC	1 cut(s)	323
Kzo9I	GATC	4 cut(s)	11, 350, 369, 667
LmnI	GCTCC	3 cut(s)	141, 271, 317
Lsp1109I	GCAGC	6 cut(s)	35, 131, 134, 305, 669, 672
LweI	GCATC	2 cut(s)	274, 308
MaeII	ACGT	2 cut(s)	40, 600
MalI	GATC	4 cut(s)	13, 352, 371, 669
MboI	GATC	4 cut(s)	11, 350, 369, 667
MboII	GAAGA	5 cut(s)	34, 325, 416, 419, 550
MflI	RGATCY	2 cut(s)	11, 350
MlsI	TGGCCA	2 cut(s)	236, 495
MluCI	AATT	3 cut(s)	95, 186, 414
MluNI	TGGCCA	2 cut(s)	236, 495
MlyI	GAGTC	1 cut(s)	299
MnlI	CCTC	4 cut(s)	90, 441, 569, 642
Mox20I	TGGCCA	2 cut(s)	236, 495
MroI	TCCGGA	1 cut(s)	107
MroNI	GCCGGC	1 cut(s)	321
MroXI	GAANNNNTTC	1 cut(s)	608
MscI	TGGCCA	2 cut(s)	236, 495
MseI	TTAA	1 cut(s)	459
Msp20I	TGGCCA	2 cut(s)	236, 495
MspI	CCGG	4 cut(s)	108, 322, 392, 671
MspR9I	CCNGG	3 cut(s)	192, 393, 546
MvaI	CCWGG	2 cut(s)	192, 546
MwoI	GCNNNNNNNGC	4 cut(s)	293, 318, 327, 336
NaeI	GCCGGC	1 cut(s)	323
NciI	CCSGG	1 cut(s)	393
NcoI	CCATGG	1 cut(s)	346
NdeII	GATC	4 cut(s)	11, 350, 369, 667
NgoMIV	GCCGGC	1 cut(s)	321
NlaIII	CATG	7 cut(s)	61, 104, 167, 350, 524, 534, 625
NlaIV	GGNNCC	3 cut(s)	246, 267, 352
NspI	RCATGY	1 cut(s)	534
PagI	TCATGA	2 cut(s)	163, 520
PdiI	GCCGGC	1 cut(s)	323
PdmI	GAANNNNTTC	1 cut(s)	608
PfoI	TCCNGGA	1 cut(s)	190
PkrI	GCNGC	7 cut(s)	50, 146, 149, 265, 295, 659, 662
PleI	GAGTC	1 cut(s)	299
PmaCI	CACGTG	1 cut(s)	601
PmlI	CACGTG	1 cut(s)	601
PpsI	GAGTC	1 cut(s)	299
Ppu21I	YACGTR	1 cut(s)	601
PpuMI	RGGWCCY	1 cut(s)	548
PshBI	ATTAAT	1 cut(s)	459
Psp5II	RGGWCCY	1 cut(s)	548
Psp6I	CCWGG	2 cut(s)	190, 544
PspCI	CACGTG	1 cut(s)	601
PspGI	CCWGG	2 cut(s)	190, 544
PspN4I	GGNNCC	3 cut(s)	246, 267, 352
PspPI	GGNCC	2 cut(s)	110, 548
PspPPI	RGGWCCY	1 cut(s)	548
PstNI	CAGNNNCTG	2 cut(s)	382, 551
PsuI	RGATCY	2 cut(s)	11, 350
RsaI	GTAC	1 cut(s)	438
RsaNI	GTAC	1 cut(s)	437
SaqAI	TTAA	1 cut(s)	459
SatI	GCNGC	7 cut(s)	49, 145, 148, 264, 294, 658, 661
Sau3AI	GATC	4 cut(s)	11, 350, 369, 667
Sau96I	GGNCC	2 cut(s)	110, 548
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	3 cut(s)	192, 393, 546
SetI	ASST	8 cut(s)	30, 43, 88, 146, 208, 550, 603, 634
SfaNI	GCATC	2 cut(s)	274, 308
SinI	GGWCC	2 cut(s)	110, 548
SmlI	CTYRAG	1 cut(s)	81
SmoI	CTYRAG	1 cut(s)	81
Sse9I	AATT	3 cut(s)	95, 186, 414
SsiI	CCGC	4 cut(s)	263, 467, 554, 674
StyD4I	CCNGG	3 cut(s)	190, 391, 544
StyI	CCWWGG	1 cut(s)	346
TaiI	ACGT	2 cut(s)	43, 603
TaqI	TCGA	1 cut(s)	612
TasI	AATT	3 cut(s)	95, 186, 414
TatI	WGTACW	1 cut(s)	436
TauI	GCSGC	1 cut(s)	266
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TscAI	CASTG	1 cut(s)	38
TseI	GCWGC	6 cut(s)	48, 144, 147, 293, 657, 660
TspDTI	ATGAA	4 cut(s)	89, 146, 264, 610
TspGWI	ACGGA	1 cut(s)	141
TspRI	CASTG	1 cut(s)	38
VpaK11BI	GGWCC	2 cut(s)	110, 548
VspI	ATTAAT	1 cut(s)	459
XapI	RAATTY	1 cut(s)	186
XceI	RCATGY	1 cut(s)	534
XmnI	GAANNNNTTC	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.