Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0016217

Physical Location & Seq

Genomic Coordinates Forward (+)

4986225 .. 4989208

Gene Structure 2984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00282880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGAGGGCCATCCGGCAGCTCTGCTTAAATGCCAGCGAATCGGCTGCAACGCCACCTTTTCCGAAGACAACAATCCCGAAGGTTCTTGCCAATACCACGATGCGCCTATATTTCATGATGGGATTAAAGAGTGGAGTTGTTGCAAGAAAAGAAGTCATGATTTCAGCTTATTTTTAGAATTAGAAGGATGCAAGACAGGTAAACACACAACAGAGAAGCCTGTTTTGGCAAAGGTGAAACCTAAGACGCCTGTTTCTACGTCAGCTTCTGCATCTGATGCGTCAGCAAAACAATCCTGCTCTAGGTGCCAACAGGGTTTCTTCTGTTCAGAGCATGGTTCACAAGCCAAAGAAATGAATTCAATGCCTGTAAATGTAGCCACAACGCCACTTATAGAAAGCATTACAAATGATCAAGGCACCTCTGCTCCACTGAAAAAGATTATTGACATAAACCAGCCCCAAATCTGCAAAAATAAAGGTTGTGGTCAAACTTTCAAAGAGAGGGATAACCATGAGACGGCATGCAATTACCACCCGGGGCCTGCTGTTTTCCATGACCGAGTGAGAGGGTGGAAGTGCTGTGATGTTCATGTAAAGGAATTTGACGAGTTTGTGAGCATCCCTCCGTGTACCAAGGGGTGGCACAATGCTGACCCAGTCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0002679 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009814 GO:0009816 GO:0009817 GO:0009987 GO:0012501 GO:0017016 GO:0017048 GO:0019899 GO:0031072 GO:0031267 GO:0031647 GO:0033554 GO:0034050 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0045730 GO:0046872 GO:0046914 GO:0050821 GO:0050832 GO:0050896 GO:0051020 GO:0051704 GO:0051707 GO:0051716 GO:0051879 GO:0065007 GO:0065008 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

CHORD

Protein Analysis

222

Amino Acids

24.51

Weight (kDa)

7.12

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CHORD	PF04968	10 - 69	3.4e-22	CHORD
CHORD	PF04968	156 - 216	1.4e-23	CHORD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51700 AT5G51700
fragaria_vesca	FvH4_7g28300 FvH4_7g28300
malus_domestica	MD01G1187300.v1.1 MD07G1259600.v1.1
prunus_persica	Prupe.2G283700_v2.0.a1
pyrus_communis	pycom07g23300
rosa_chinensis	RchiOBHm_Chr1g0375271
rosa_laevigata	RLG00000026672
rosa_multiflora	Rmu_sc0000554.1_g000035
rosa_roxburghii	Rroxscaffold_4G00282880
rosa_samantha	Rh1AG400400 Rh1BG364000
rosa_wichuraiana	Rw1G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	306, 419
AccB7I	CCANNNNNTGG	1 cut(s)	642
AcsI	RAATTY	2 cut(s)	358, 602
AcyI	GRCGYC	1 cut(s)	248
AfaI	GTAC	1 cut(s)	634
AfiI	CCNNNNNNNGG	3 cut(s)	303, 520, 642
AgsI	TTSAA	2 cut(s)	363, 499
AjuI	GAANNNNNNNTTGG	2 cut(s)	209, 241
AluBI	AGCT	3 cut(s)	20, 168, 266
AluI	AGCT	3 cut(s)	20, 168, 266
Alw26I	GTCTC	1 cut(s)	512
AlwNI	CAGNNNCTG	1 cut(s)	269
Ama87I	CYCGRG	1 cut(s)	538
AoxI	GGCC	2 cut(s)	7, 542
ApeKI	GCWGC	2 cut(s)	17, 45
ApoI	RAATTY	2 cut(s)	358, 602
AspLEI	GCGC	1 cut(s)	106
AspS9I	GGNCC	2 cut(s)	7, 542
AsuC2I	CCSGG	2 cut(s)	539, 540
AsuHPI	GGTGA	1 cut(s)	247
AvaI	CYCGRG	1 cut(s)	538
BanI	GGYRCC	2 cut(s)	306, 419
BbsI	GAAGAC	1 cut(s)	72
BbvI	GCAGC	2 cut(s)	29, 32
BccI	CCATC	2 cut(s)	18, 113
BceAI	ACGGC	1 cut(s)	537
BcgI	CGANNNNNNTGC	2 cut(s)	27, 61
BclI	TGATCA	1 cut(s)	412
BcnI	CCSGG	2 cut(s)	539, 540
BcoDI	GTCTC	1 cut(s)	512
BfaI	CTAG	1 cut(s)	303
BisI	GCNGC	2 cut(s)	18, 46
BlsI	GCNGC	2 cut(s)	19, 47
Bme1390I	CCNGG	2 cut(s)	539, 540
BmeT110I	CYCGRG	1 cut(s)	538
BmgT120I	GGNCC	2 cut(s)	7, 542
BmiI	GGNNCC	3 cut(s)	308, 421, 543
BmrFI	CCNGG	2 cut(s)	539, 540
BmrI	ACTGGG	1 cut(s)	653
BmsI	GCATC	5 cut(s)	91, 179, 268, 281, 630
BmuI	ACTGGG	1 cut(s)	653
BpiI	GAAGAC	1 cut(s)	72
BplI	GAGNNNNNCTC	2 cut(s)	610, 642
BpuMI	CCSGG	2 cut(s)	539, 540
BsaHI	GRCGYC	1 cut(s)	248
BsaJI	CCNNGG	3 cut(s)	538, 539, 636
BsaXI	ACNNNNNCTCC	2 cut(s)	412, 442
Bsc4I	CCNNNNNNNGG	3 cut(s)	303, 520, 642
Bse1I	ACTGG	2 cut(s)	659, 664
BseDI	CCNNGG	3 cut(s)	538, 539, 636
BseGI	GGATG	3 cut(s)	10, 194, 621
BseLI	CCNNNNNNNGG	3 cut(s)	303, 520, 642
BseNI	ACTGG	2 cut(s)	659, 664
BseXI	GCAGC	2 cut(s)	29, 32
BshFI	GGCC	2 cut(s)	9, 544
BshNI	GGYRCC	2 cut(s)	306, 419
BsiHKCI	CYCGRG	1 cut(s)	538
BsiSI	CCGG	2 cut(s)	14, 539
BslI	CCNNNNNNNGG	3 cut(s)	303, 520, 642
BsmAI	GTCTC	1 cut(s)	512
BsmBI	CGTCTC	1 cut(s)	512
BsnI	GGCC	2 cut(s)	9, 544
BsoBI	CYCGRG	1 cut(s)	538
Bsp143I	GATC	1 cut(s)	412
BspANI	GGCC	2 cut(s)	9, 544
BspHI	TCATGA	2 cut(s)	115, 157
BspLI	GGNNCC	3 cut(s)	308, 421, 543
BspT107I	GGYRCC	2 cut(s)	306, 419
BsrI	ACTGG	2 cut(s)	659, 664
BssECI	CCNNGG	3 cut(s)	538, 539, 636
BssMI	GATC	1 cut(s)	412
BssNI	GRCGYC	1 cut(s)	248
BssT1I	CCWWGG	1 cut(s)	636
BstACI	GRCGYC	1 cut(s)	248
BstAPI	GCANNNNNTGC	1 cut(s)	278
BstC8I	GCNNGC	3 cut(s)	35, 526, 546
BstDEI	CTNAG	1 cut(s)	243
BstENI	CCTNNNNNAGG	1 cut(s)	301
BstF5I	GGATG	3 cut(s)	10, 194, 621
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	1 cut(s)	415
BstMAI	GTCTC	1 cut(s)	512
BstMBI	GATC	1 cut(s)	412
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 306
BstNSI	RCATGY	1 cut(s)	528
BstSCI	CCNGG	2 cut(s)	537, 538
BstV1I	GCAGC	2 cut(s)	29, 32
BstV2I	GAAGAC	1 cut(s)	72
BsuRI	GGCC	2 cut(s)	9, 544
BtsCI	GGATG	3 cut(s)	10, 194, 621
BtsIMutI	CAGTG	1 cut(s)	431
Cac8I	GCNNGC	3 cut(s)	35, 526, 546
CaiI	CAGNNNCTG	1 cut(s)	269
CciI	TCATGA	2 cut(s)	115, 157
CfoI	GCGC	1 cut(s)	106
Cfr13I	GGNCC	2 cut(s)	7, 542
Cfr9I	CCCGGG	1 cut(s)	538
CseI	GACGC	2 cut(s)	256, 270
Csp6I	GTAC	1 cut(s)	633
CviAII	CATG	7 cut(s)	116, 158, 335, 515, 525, 557, 593
CviQI	GTAC	1 cut(s)	633
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	1 cut(s)	414
DpnII	GATC	1 cut(s)	412
Eco130I	CCWWGG	1 cut(s)	636
Eco88I	CYCGRG	1 cut(s)	538
EcoNI	CCTNNNNNAGG	1 cut(s)	301
EcoO109I	RGGNCCY	1 cut(s)	542
EcoRI	GAATTC	1 cut(s)	358
EcoT14I	CCWWGG	1 cut(s)	636
ErhI	CCWWGG	1 cut(s)	636
Esp3I	CGTCTC	1 cut(s)	512
FaeI	CATG	7 cut(s)	119, 161, 338, 518, 528, 560, 596
FatI	CATG	7 cut(s)	115, 157, 334, 514, 524, 556, 592
FbaI	TGATCA	1 cut(s)	412
Fnu4HI	GCNGC	2 cut(s)	18, 46
FokI	GGATG	2 cut(s)	201, 608
Fsp4HI	GCNGC	2 cut(s)	18, 46
FspBI	CTAG	1 cut(s)	303
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	2 cut(s)	18, 46
HaeIII	GGCC	2 cut(s)	9, 544
HapII	CCGG	2 cut(s)	14, 539
HgaI	GACGC	2 cut(s)	256, 270
HhaI	GCGC	1 cut(s)	106
Hin1I	GRCGYC	1 cut(s)	248
Hin1II	CATG	7 cut(s)	119, 161, 338, 518, 528, 560, 596
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HinfI	GANTC	1 cut(s)	39
HpaII	CCGG	2 cut(s)	14, 539
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	3 cut(s)	203, 341, 633
Hpy188I	TCNGA	3 cut(s)	64, 277, 331
Hpy188III	TCNNGA	3 cut(s)	77, 116, 158
Hpy8I	GTNNAC	3 cut(s)	203, 341, 633
HpyAV	CCTTC	2 cut(s)	74, 179
HpyCH4IV	ACGT	1 cut(s)	260
HpyCH4V	TGCA	6 cut(s)	48, 144, 192, 272, 471, 528
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 306
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	1 cut(s)	260
Hsp92I	GRCGYC	1 cut(s)	248
Hsp92II	CATG	7 cut(s)	119, 161, 338, 518, 528, 560, 596
HspAI	GCGC	1 cut(s)	104
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	1 cut(s)	412
LmnI	GCTCC	1 cut(s)	433
Lsp1109I	GCAGC	2 cut(s)	29, 32
LweI	GCATC	5 cut(s)	91, 179, 268, 281, 630
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	1 cut(s)	260
MalI	GATC	1 cut(s)	414
MboI	GATC	1 cut(s)	412
MboII	GAAGA	2 cut(s)	77, 313
MluCI	AATT	4 cut(s)	179, 358, 529, 602
MnlI	CCTC	4 cut(s)	433, 498, 563, 636
MseI	TTAA	2 cut(s)	27, 126
MspI	CCGG	2 cut(s)	14, 539
MspR9I	CCNGG	2 cut(s)	539, 540
MwoI	GCNNNNNNNGC	2 cut(s)	278, 306
NciI	CCSGG	2 cut(s)	539, 540
NdeII	GATC	1 cut(s)	412
NlaIII	CATG	7 cut(s)	119, 161, 338, 518, 528, 560, 596
NlaIV	GGNNCC	3 cut(s)	308, 421, 543
NspI	RCATGY	1 cut(s)	528
PaeI	GCATGC	1 cut(s)	528
PagI	TCATGA	2 cut(s)	115, 157
PfeI	GAWTC	1 cut(s)	39
PflFI	GACNNNGTC	1 cut(s)	659
PflMI	CCANNNNNTGG	1 cut(s)	642
PkrI	GCNGC	2 cut(s)	19, 47
PspN4I	GGNNCC	3 cut(s)	308, 421, 543
PspPI	GGNCC	2 cut(s)	7, 542
PstNI	CAGNNNCTG	1 cut(s)	269
PsyI	GACNNNGTC	1 cut(s)	659
RsaI	GTAC	1 cut(s)	634
RsaNI	GTAC	1 cut(s)	633
SaqAI	TTAA	2 cut(s)	27, 126
SatI	GCNGC	2 cut(s)	18, 46
Sau3AI	GATC	1 cut(s)	412
Sau96I	GGNCC	2 cut(s)	7, 542
ScrFI	CCNGG	2 cut(s)	539, 540
SfaNI	GCATC	5 cut(s)	91, 179, 268, 281, 630
SmaI	CCCGGG	1 cut(s)	540
SphI	GCATGC	1 cut(s)	528
Sse9I	AATT	4 cut(s)	179, 358, 529, 602
SspMI	CTAG	1 cut(s)	303
StyD4I	CCNGG	2 cut(s)	537, 538
StyI	CCWWGG	1 cut(s)	636
TaiI	ACGT	1 cut(s)	263
TaqII	GACCGA	1 cut(s)	576
TasI	AATT	4 cut(s)	179, 358, 529, 602
TfiI	GAWTC	1 cut(s)	39
Tru1I	TTAA	2 cut(s)	27, 126
Tru9I	TTAA	2 cut(s)	27, 126
TscAI	CASTG	1 cut(s)	438
TseI	GCWGC	2 cut(s)	17, 45
TspDTI	ATGAA	3 cut(s)	104, 371, 581
TspGWI	ACGGA	1 cut(s)	618
TspMI	CCCGGG	1 cut(s)	538
TspRI	CASTG	1 cut(s)	438
Tth111I	GACNNNGTC	1 cut(s)	659
Van91I	CCANNNNNTGG	1 cut(s)	642
XagI	CCTNNNNNAGG	1 cut(s)	301
XapI	RAATTY	2 cut(s)	358, 602
XceI	RCATGY	1 cut(s)	528
XmaI	CCCGGG	1 cut(s)	538
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.