Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0016217

Physical Location & Seq

Genomic Coordinates Reverse (-)

63289531 .. 63292038

Gene Structure 2508 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G035550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGAGGGCCAGCCGGCAGCTCTACTTAAATGCCAGCGAATCAGCTGCAACGCCACCTTTTCCGAAGACAACAATCCCGAAGGTTCTTGCCAATACCACGATGCGGGACCTATATTTCATGATGGGATTAAAGAGTGGAGTTGTTGCAAGAAAAGAAGTCATGATTTCAGCTTATTTTTAGAATTAGAAGGATGCAAGACAGGTAAACACACAACAGAGAAACCTGTTTTGCCAAAGGCGAAACCTAAGACGCCTGTTTCTACGTCAGCTCCTGCATCTGATGCGTCAGCTAAACAATCCTGCTCTAGGTGCCAGCAGGGTTTCTTCTGTTCAGAGCATGGTTCACAAGCCAAAGAAATGAATTCAAAGCCTGTAAATGTAGCCACAACGCCACTTACAGAAAGCATTACAAATGATCAAGGCACTTCTGCTCCACTGAAAAAGATTATTGACATAAACCAGCCCCAAATCTGCAAAAATAAAGGTTGTGGTCAAACTTTCAAAGAGAGGGATAACCATGAGACGGCATGCAATTACCACCCGGGGCCTGCTGTTTTCCATGACCGAGTGAGAGGGTGGAAGTGCTGTGACGTTCATGTAAAGGAATTTGACGAGTTTGTGAACATCCCTCCGTGTACCAAGGGGTGGCACAATGCTAACCCAATCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0002679 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009814 GO:0009816 GO:0009817 GO:0009987 GO:0012501 GO:0017016 GO:0017048 GO:0019899 GO:0031072 GO:0031267 GO:0031647 GO:0033554 GO:0034050 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0045730 GO:0046872 GO:0046914 GO:0050821 GO:0050832 GO:0050896 GO:0051020 GO:0051704 GO:0051707 GO:0051716 GO:0051879 GO:0065007 GO:0065008 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

CHORD

Protein Analysis

223

Amino Acids

24.62

Weight (kDa)

7.89

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CHORD	PF04968	10 - 70	5e-23	CHORD
CHORD	PF04968	157 - 217	1e-23	CHORD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51700 AT5G51700
fragaria_vesca	FvH4_7g28300 FvH4_7g28300
malus_domestica	MD01G1187300.v1.1 MD07G1259600.v1.1
prunus_persica	Prupe.2G283700_v2.0.a1
pyrus_communis	pycom07g23300
rosa_chinensis	RchiOBHm_Chr1g0375271
rosa_laevigata	RLG00000026672
rosa_multiflora	Rmu_sc0000554.1_g000035
rosa_roxburghii	Rroxscaffold_4G00282880
rosa_samantha	Rh1AG400400 Rh1BG364000
rosa_wichuraiana	Rw1G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	309
AccB7I	CCANNNNNTGG	1 cut(s)	645
AciI	CCGC	1 cut(s)	104
AcsI	RAATTY	2 cut(s)	361, 605
AcyI	GRCGYC	1 cut(s)	251
AfaI	GTAC	1 cut(s)	637
AfiI	CCNNNNNNNGG	4 cut(s)	103, 306, 523, 645
AgsI	TTSAA	2 cut(s)	366, 502
AluBI	AGCT	5 cut(s)	20, 45, 171, 269, 290
AluI	AGCT	5 cut(s)	20, 45, 171, 269, 290
Alw26I	GTCTC	1 cut(s)	515
AlwNI	CAGNNNCTG	1 cut(s)	272
Ama87I	CYCGRG	1 cut(s)	541
AoxI	GGCC	2 cut(s)	7, 545
ApeKI	GCWGC	2 cut(s)	17, 45
ApoI	RAATTY	2 cut(s)	361, 605
AspS9I	GGNCC	3 cut(s)	7, 107, 545
AsuC2I	CCSGG	2 cut(s)	542, 543
AvaI	CYCGRG	1 cut(s)	541
AvaII	GGWCC	1 cut(s)	107
BanI	GGYRCC	1 cut(s)	309
BbsI	GAAGAC	1 cut(s)	72
BbvI	GCAGC	2 cut(s)	29, 32
BccI	CCATC	1 cut(s)	116
BceAI	ACGGC	1 cut(s)	540
BcgI	CGANNNNNNTGC	2 cut(s)	27, 61
BclI	TGATCA	1 cut(s)	415
BcnI	CCSGG	2 cut(s)	542, 543
BcoDI	GTCTC	1 cut(s)	515
BfaI	CTAG	1 cut(s)	306
BisI	GCNGC	2 cut(s)	18, 46
BlsI	GCNGC	2 cut(s)	19, 47
Bme1390I	CCNGG	2 cut(s)	542, 543
Bme18I	GGWCC	1 cut(s)	107
BmeT110I	CYCGRG	1 cut(s)	541
BmgT120I	GGNCC	3 cut(s)	7, 107, 545
BmiI	GGNNCC	3 cut(s)	108, 311, 546
BmrFI	CCNGG	2 cut(s)	542, 543
BmsI	GCATC	4 cut(s)	91, 182, 271, 284
BpiI	GAAGAC	1 cut(s)	72
BpuMI	CCSGG	2 cut(s)	542, 543
BsaHI	GRCGYC	1 cut(s)	251
BsaJI	CCNNGG	3 cut(s)	541, 542, 639
BsaXI	ACNNNNNCTCC	4 cut(s)	253, 283, 415, 445
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 306, 523, 645
Bse118I	RCCGGY	1 cut(s)	13
Bse1I	ACTGG	1 cut(s)	667
BseDI	CCNNGG	3 cut(s)	541, 542, 639
BseGI	GGATG	2 cut(s)	197, 624
BseLI	CCNNNNNNNGG	4 cut(s)	103, 306, 523, 645
BseNI	ACTGG	1 cut(s)	667
BseXI	GCAGC	2 cut(s)	29, 32
BshFI	GGCC	2 cut(s)	9, 547
BshNI	GGYRCC	1 cut(s)	309
BsiHKCI	CYCGRG	1 cut(s)	541
BsiSI	CCGG	2 cut(s)	14, 542
BslFI	GGGAC	1 cut(s)	120
BslI	CCNNNNNNNGG	4 cut(s)	103, 306, 523, 645
BsmAI	GTCTC	1 cut(s)	515
BsmBI	CGTCTC	1 cut(s)	515
BsmFI	GGGAC	1 cut(s)	120
BsnI	GGCC	2 cut(s)	9, 547
BsoBI	CYCGRG	1 cut(s)	541
Bsp143I	GATC	1 cut(s)	415
BspACI	CCGC	1 cut(s)	104
BspANI	GGCC	2 cut(s)	9, 547
BspHI	TCATGA	2 cut(s)	118, 160
BspLI	GGNNCC	3 cut(s)	108, 311, 546
BspT107I	GGYRCC	1 cut(s)	309
BsrFI	RCCGGY	1 cut(s)	13
BsrI	ACTGG	1 cut(s)	667
BssAI	RCCGGY	1 cut(s)	13
BssECI	CCNNGG	3 cut(s)	541, 542, 639
BssMI	GATC	1 cut(s)	415
BssNI	GRCGYC	1 cut(s)	251
BssT1I	CCWWGG	1 cut(s)	639
BstACI	GRCGYC	1 cut(s)	251
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstC8I	GCNNGC	6 cut(s)	11, 15, 35, 314, 529, 549
BstDEI	CTNAG	1 cut(s)	246
BstENI	CCTNNNNNAGG	1 cut(s)	304
BstF5I	GGATG	2 cut(s)	197, 624
BstKTI	GATC	1 cut(s)	418
BstMAI	GTCTC	1 cut(s)	515
BstMBI	GATC	1 cut(s)	415
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 309
BstNSI	RCATGY	1 cut(s)	531
BstSCI	CCNGG	2 cut(s)	540, 541
BstV1I	GCAGC	2 cut(s)	29, 32
BstV2I	GAAGAC	1 cut(s)	72
BsuRI	GGCC	2 cut(s)	9, 547
BtsCI	GGATG	2 cut(s)	197, 624
BtsIMutI	CAGTG	1 cut(s)	434
Cac8I	GCNNGC	6 cut(s)	11, 15, 35, 314, 529, 549
CaiI	CAGNNNCTG	1 cut(s)	272
CciI	TCATGA	2 cut(s)	118, 160
Cfr10I	RCCGGY	1 cut(s)	13
Cfr13I	GGNCC	3 cut(s)	7, 107, 545
Cfr9I	CCCGGG	1 cut(s)	541
CseI	GACGC	2 cut(s)	259, 273
Csp6I	GTAC	1 cut(s)	636
CviAII	CATG	7 cut(s)	119, 161, 338, 518, 528, 560, 596
CviQI	GTAC	1 cut(s)	636
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	1 cut(s)	417
DpnII	GATC	1 cut(s)	415
Eco130I	CCWWGG	1 cut(s)	639
Eco47I	GGWCC	1 cut(s)	107
Eco88I	CYCGRG	1 cut(s)	541
EcoNI	CCTNNNNNAGG	1 cut(s)	304
EcoO109I	RGGNCCY	2 cut(s)	107, 545
EcoRI	GAATTC	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	639
ErhI	CCWWGG	1 cut(s)	639
Esp3I	CGTCTC	1 cut(s)	515
FaeI	CATG	7 cut(s)	122, 164, 341, 521, 531, 563, 599
FaiI	YATR	9 cut(s)	113, 120, 162, 339, 455, 519, 529, 561, 597
FaqI	GGGAC	1 cut(s)	120
FatI	CATG	7 cut(s)	118, 160, 337, 517, 527, 559, 595
FauI	CCCGC	1 cut(s)	97
FbaI	TGATCA	1 cut(s)	415
Fnu4HI	GCNGC	2 cut(s)	18, 46
FokI	GGATG	2 cut(s)	204, 611
Fsp4HI	GCNGC	2 cut(s)	18, 46
FspBI	CTAG	1 cut(s)	306
GluI	GCNGC	2 cut(s)	18, 46
HaeIII	GGCC	2 cut(s)	9, 547
HapII	CCGG	2 cut(s)	14, 542
HgaI	GACGC	2 cut(s)	259, 273
Hin1I	GRCGYC	1 cut(s)	251
Hin1II	CATG	7 cut(s)	122, 164, 341, 521, 531, 563, 599
HinfI	GANTC	1 cut(s)	39
HpaII	CCGG	2 cut(s)	14, 542
Hpy166II	GTNNAC	4 cut(s)	206, 344, 622, 636
Hpy188I	TCNGA	3 cut(s)	64, 280, 334
Hpy188III	TCNNGA	3 cut(s)	77, 119, 161
Hpy8I	GTNNAC	4 cut(s)	206, 344, 622, 636
HpyAV	CCTTC	2 cut(s)	74, 182
HpyCH4IV	ACGT	2 cut(s)	263, 591
HpyCH4V	TGCA	6 cut(s)	48, 147, 195, 275, 474, 531
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 309
HpyF3I	CTNAG	1 cut(s)	246
HpySE526I	ACGT	2 cut(s)	263, 591
Hsp92I	GRCGYC	1 cut(s)	251
Hsp92II	CATG	7 cut(s)	122, 164, 341, 521, 531, 563, 599
KroI	GCCGGC	1 cut(s)	13
KroNI	GCCGGC	1 cut(s)	15
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	1 cut(s)	415
LmnI	GCTCC	2 cut(s)	274, 436
Lsp1109I	GCAGC	2 cut(s)	29, 32
LweI	GCATC	4 cut(s)	91, 182, 271, 284
MaeI	CTAG	1 cut(s)	306
MaeII	ACGT	2 cut(s)	263, 591
MaeIII	GTNAC	1 cut(s)	587
MalI	GATC	1 cut(s)	417
MboI	GATC	1 cut(s)	415
MboII	GAAGA	2 cut(s)	77, 316
MluCI	AATT	4 cut(s)	182, 361, 532, 605
MnlI	CCTC	3 cut(s)	501, 566, 639
MroNI	GCCGGC	1 cut(s)	13
MseI	TTAA	2 cut(s)	27, 129
MspA1I	CMGCKG	1 cut(s)	45
MspI	CCGG	2 cut(s)	14, 542
MspR9I	CCNGG	2 cut(s)	542, 543
MwoI	GCNNNNNNNGC	2 cut(s)	281, 309
NaeI	GCCGGC	1 cut(s)	15
NciI	CCSGG	2 cut(s)	542, 543
NdeII	GATC	1 cut(s)	415
NgoMIV	GCCGGC	1 cut(s)	13
NlaIII	CATG	7 cut(s)	122, 164, 341, 521, 531, 563, 599
NlaIV	GGNNCC	3 cut(s)	108, 311, 546
NmuCI	GTSAC	1 cut(s)	587
NspI	RCATGY	1 cut(s)	531
PaeI	GCATGC	1 cut(s)	531
PagI	TCATGA	2 cut(s)	118, 160
PdiI	GCCGGC	1 cut(s)	15
PfeI	GAWTC	1 cut(s)	39
PflMI	CCANNNNNTGG	1 cut(s)	645
PkrI	GCNGC	2 cut(s)	19, 47
PpuMI	RGGWCCY	1 cut(s)	107
Psp5II	RGGWCCY	1 cut(s)	107
PspN4I	GGNNCC	3 cut(s)	108, 311, 546
PspPI	GGNCC	3 cut(s)	7, 107, 545
PspPPI	RGGWCCY	1 cut(s)	107
PstNI	CAGNNNCTG	1 cut(s)	272
PvuII	CAGCTG	1 cut(s)	45
RsaI	GTAC	1 cut(s)	637
RsaNI	GTAC	1 cut(s)	636
SaqAI	TTAA	2 cut(s)	27, 129
SatI	GCNGC	2 cut(s)	18, 46
Sau3AI	GATC	1 cut(s)	415
Sau96I	GGNCC	3 cut(s)	7, 107, 545
ScrFI	CCNGG	2 cut(s)	542, 543
SfaNI	GCATC	4 cut(s)	91, 182, 271, 284
SinI	GGWCC	1 cut(s)	107
SmaI	CCCGGG	1 cut(s)	543
SphI	GCATGC	1 cut(s)	531
Sse9I	AATT	4 cut(s)	182, 361, 532, 605
SsiI	CCGC	1 cut(s)	104
SspMI	CTAG	1 cut(s)	306
StyD4I	CCNGG	2 cut(s)	540, 541
StyI	CCWWGG	1 cut(s)	639
TaiI	ACGT	2 cut(s)	266, 594
TaqII	GACCGA	1 cut(s)	579
TasI	AATT	4 cut(s)	182, 361, 532, 605
TfiI	GAWTC	1 cut(s)	39
Tru1I	TTAA	2 cut(s)	27, 129
Tru9I	TTAA	2 cut(s)	27, 129
TscAI	CASTG	1 cut(s)	441
TseFI	GTSAC	1 cut(s)	587
TseI	GCWGC	2 cut(s)	17, 45
Tsp45I	GTSAC	1 cut(s)	587
TspDTI	ATGAA	3 cut(s)	107, 374, 584
TspGWI	ACGGA	1 cut(s)	621
TspMI	CCCGGG	1 cut(s)	541
TspRI	CASTG	1 cut(s)	441
Van91I	CCANNNNNTGG	1 cut(s)	645
VpaK11BI	GGWCC	1 cut(s)	107
XagI	CCTNNNNNAGG	1 cut(s)	304
XapI	RAATTY	2 cut(s)	361, 605
XceI	RCATGY	1 cut(s)	531
XmaI	CCCGGG	1 cut(s)	541
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.