Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000554.1

Orthogroup ID

OG0016217

Physical Location & Seq

Genomic Coordinates Reverse (-)

164275 .. 165890

Gene Structure 1616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000554.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atgtttgggcttggtttgatcgcatgggcgtcttcaattcgtcagggacctatatttcatgatgggattaaagagtggagttgttgcaagaaaagaagtcatgatttcagcttatttttagaattagaaggatgcaagactggtaaacacacaacagagaaacctgttttgccaaaggcgaaacctaagacgcctgtttctacgtcagctcctgcatctgatgcgtcagctaaacaatcctgctctaggtgccaacagggtttcttctgttcagagcatggttcacaagccaaagaaatgaattcaaagcctgtaaatgtagccacaacgccacttacagaaagcattacaaatgatcaaggcacttctgctccactgaaaaagattattgacataaaccagccccaaatctgcaaaaataaaggttgtggtcaaactttcaaagagagggataaccatgagacggcatgcaattaccacccggggcctgctgttttccatgaccgagtgagagggtggaagtgctgtgacgttcatgtaaaggaatttgacgagtttgtgaacatccctccgtgtaccaaggggtggcacaatgctaacccagtccagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0002679 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009814 GO:0009816 GO:0009817 GO:0009987 GO:0012501 GO:0017016 GO:0017048 GO:0019899 GO:0031072 GO:0031267 GO:0031647 GO:0033554 GO:0034050 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0045730 GO:0046872 GO:0046914 GO:0050821 GO:0050832 GO:0050896 GO:0051020 GO:0051704 GO:0051707 GO:0051716 GO:0051879 GO:0065007 GO:0065008 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

CHORD

Protein Analysis

203

Amino Acids

22.43

Weight (kDa)

8.7

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51700 AT5G51700
fragaria_vesca	FvH4_7g28300 FvH4_7g28300
malus_domestica	MD01G1187300.v1.1 MD07G1259600.v1.1
prunus_persica	Prupe.2G283700_v2.0.a1
pyrus_communis	pycom07g23300
rosa_chinensis	RchiOBHm_Chr1g0375271
rosa_laevigata	RLG00000026672
rosa_multiflora	Rmu_sc0000554.1_g000035
rosa_roxburghii	Rroxscaffold_4G00282880
rosa_samantha	Rh1AG400400 Rh1BG364000
rosa_wichuraiana	Rw1G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	249
AccB7I	CCANNNNNTGG	1 cut(s)	585
AcsI	RAATTY	2 cut(s)	301, 545
AcyI	GRCGYC	2 cut(s)	29, 191
AfaI	GTAC	1 cut(s)	577
AfiI	CCNNNNNNNGG	3 cut(s)	246, 463, 585
AgsI	TTSAA	3 cut(s)	36, 306, 442
AluBI	AGCT	3 cut(s)	111, 209, 230
AluI	AGCT	3 cut(s)	111, 209, 230
Alw26I	GTCTC	1 cut(s)	455
AlwNI	CAGNNNCTG	1 cut(s)	212
Ama87I	CYCGRG	1 cut(s)	481
AoxI	GGCC	1 cut(s)	485
ApoI	RAATTY	2 cut(s)	301, 545
AspS9I	GGNCC	2 cut(s)	47, 485
AsuC2I	CCSGG	2 cut(s)	482, 483
AvaI	CYCGRG	1 cut(s)	481
AvaII	GGWCC	1 cut(s)	47
BanI	GGYRCC	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	24
BccI	CCATC	1 cut(s)	56
BceAI	ACGGC	1 cut(s)	480
BclI	TGATCA	1 cut(s)	355
BcnI	CCSGG	2 cut(s)	482, 483
BcoDI	GTCTC	1 cut(s)	455
BfaI	CTAG	1 cut(s)	246
Bme1390I	CCNGG	2 cut(s)	482, 483
Bme18I	GGWCC	1 cut(s)	47
BmeT110I	CYCGRG	1 cut(s)	481
BmgT120I	GGNCC	2 cut(s)	47, 485
BmiI	GGNNCC	3 cut(s)	48, 251, 486
BmrFI	CCNGG	2 cut(s)	482, 483
BmrI	ACTGGG	1 cut(s)	596
BmsI	GCATC	3 cut(s)	122, 211, 224
BmuI	ACTGGG	1 cut(s)	596
BpiI	GAAGAC	1 cut(s)	24
BpuMI	CCSGG	2 cut(s)	482, 483
BsaHI	GRCGYC	2 cut(s)	29, 191
BsaJI	CCNNGG	3 cut(s)	481, 482, 579
BsaXI	ACNNNNNCTCC	4 cut(s)	193, 223, 355, 385
Bsc4I	CCNNNNNNNGG	3 cut(s)	246, 463, 585
Bse1I	ACTGG	3 cut(s)	145, 602, 607
BseDI	CCNNGG	3 cut(s)	481, 482, 579
BseGI	GGATG	2 cut(s)	137, 564
BseLI	CCNNNNNNNGG	3 cut(s)	246, 463, 585
BseNI	ACTGG	3 cut(s)	145, 602, 607
BshFI	GGCC	1 cut(s)	487
BshNI	GGYRCC	1 cut(s)	249
BsiHKCI	CYCGRG	1 cut(s)	481
BsiSI	CCGG	1 cut(s)	482
BslFI	GGGAC	1 cut(s)	60
BslI	CCNNNNNNNGG	3 cut(s)	246, 463, 585
BsmAI	GTCTC	1 cut(s)	455
BsmBI	CGTCTC	1 cut(s)	455
BsmFI	GGGAC	1 cut(s)	60
BsnI	GGCC	1 cut(s)	487
BsoBI	CYCGRG	1 cut(s)	481
Bsp143I	GATC	2 cut(s)	18, 355
BspANI	GGCC	1 cut(s)	487
BspHI	TCATGA	2 cut(s)	58, 100
BspLI	GGNNCC	3 cut(s)	48, 251, 486
BspT107I	GGYRCC	1 cut(s)	249
BsrI	ACTGG	3 cut(s)	145, 602, 607
BssECI	CCNNGG	3 cut(s)	481, 482, 579
BssMI	GATC	2 cut(s)	18, 355
BssNI	GRCGYC	2 cut(s)	29, 191
BssT1I	CCWWGG	1 cut(s)	579
BstACI	GRCGYC	2 cut(s)	29, 191
BstAPI	GCANNNNNTGC	1 cut(s)	221
BstC8I	GCNNGC	2 cut(s)	469, 489
BstDEI	CTNAG	1 cut(s)	186
BstENI	CCTNNNNNAGG	1 cut(s)	244
BstF5I	GGATG	2 cut(s)	137, 564
BstKTI	GATC	2 cut(s)	21, 358
BstMAI	GTCTC	1 cut(s)	455
BstMBI	GATC	2 cut(s)	18, 355
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 249
BstNSI	RCATGY	1 cut(s)	471
BstSCI	CCNGG	2 cut(s)	480, 481
BstV2I	GAAGAC	1 cut(s)	24
BsuRI	GGCC	1 cut(s)	487
BtsCI	GGATG	2 cut(s)	137, 564
BtsIMutI	CAGTG	1 cut(s)	374
Cac8I	GCNNGC	2 cut(s)	469, 489
CaiI	CAGNNNCTG	1 cut(s)	212
CciI	TCATGA	2 cut(s)	58, 100
Cfr13I	GGNCC	2 cut(s)	47, 485
Cfr9I	CCCGGG	1 cut(s)	481
CseI	GACGC	3 cut(s)	18, 199, 213
Csp6I	GTAC	1 cut(s)	576
CviAII	CATG	8 cut(s)	24, 59, 101, 278, 458, 468, 500, 536
CviJI	RGCY	9 cut(s)	10, 111, 209, 230, 290, 310, 323, 403, 487
CviKI_1	RGCY	9 cut(s)	10, 111, 209, 230, 290, 310, 323, 403, 487
CviQI	GTAC	1 cut(s)	576
DdeI	CTNAG	1 cut(s)	186
DpnI	GATC	2 cut(s)	20, 357
DpnII	GATC	2 cut(s)	18, 355
Eco130I	CCWWGG	1 cut(s)	579
Eco47I	GGWCC	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	481
EcoNI	CCTNNNNNAGG	1 cut(s)	244
EcoO109I	RGGNCCY	2 cut(s)	47, 485
EcoRI	GAATTC	1 cut(s)	301
EcoT14I	CCWWGG	1 cut(s)	579
ErhI	CCWWGG	1 cut(s)	579
Esp3I	CGTCTC	1 cut(s)	455
FaeI	CATG	8 cut(s)	27, 62, 104, 281, 461, 471, 503, 539
FaqI	GGGAC	1 cut(s)	60
FatI	CATG	8 cut(s)	23, 58, 100, 277, 457, 467, 499, 535
FbaI	TGATCA	1 cut(s)	355
FokI	GGATG	2 cut(s)	144, 551
FspBI	CTAG	1 cut(s)	246
HaeIII	GGCC	1 cut(s)	487
HapII	CCGG	1 cut(s)	482
HgaI	GACGC	3 cut(s)	18, 199, 213
Hin1I	GRCGYC	2 cut(s)	29, 191
Hin1II	CATG	8 cut(s)	27, 62, 104, 281, 461, 471, 503, 539
HpaII	CCGG	1 cut(s)	482
Hpy166II	GTNNAC	4 cut(s)	146, 284, 562, 576
Hpy188I	TCNGA	2 cut(s)	220, 274
Hpy188III	TCNNGA	2 cut(s)	59, 101
Hpy8I	GTNNAC	4 cut(s)	146, 284, 562, 576
HpyAV	CCTTC	1 cut(s)	122
HpyCH4IV	ACGT	2 cut(s)	203, 531
HpyCH4V	TGCA	5 cut(s)	87, 135, 215, 414, 471
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 249
HpyF3I	CTNAG	1 cut(s)	186
HpySE526I	ACGT	2 cut(s)	203, 531
Hsp92I	GRCGYC	2 cut(s)	29, 191
Hsp92II	CATG	8 cut(s)	27, 62, 104, 281, 461, 471, 503, 539
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	2 cut(s)	18, 355
LmnI	GCTCC	2 cut(s)	214, 376
LweI	GCATC	3 cut(s)	122, 211, 224
MaeI	CTAG	1 cut(s)	246
MaeII	ACGT	2 cut(s)	203, 531
MaeIII	GTNAC	1 cut(s)	527
MalI	GATC	2 cut(s)	20, 357
MboI	GATC	2 cut(s)	18, 355
MboII	GAAGA	2 cut(s)	24, 256
MluCI	AATT	5 cut(s)	36, 122, 301, 472, 545
MnlI	CCTC	3 cut(s)	441, 506, 579
MseI	TTAA	1 cut(s)	69
MspI	CCGG	1 cut(s)	482
MspR9I	CCNGG	2 cut(s)	482, 483
MwoI	GCNNNNNNNGC	2 cut(s)	221, 249
NciI	CCSGG	2 cut(s)	482, 483
NdeII	GATC	2 cut(s)	18, 355
NlaIII	CATG	8 cut(s)	27, 62, 104, 281, 461, 471, 503, 539
NlaIV	GGNNCC	3 cut(s)	48, 251, 486
NmuCI	GTSAC	1 cut(s)	527
NspI	RCATGY	1 cut(s)	471
PaeI	GCATGC	1 cut(s)	471
PagI	TCATGA	2 cut(s)	58, 100
PflMI	CCANNNNNTGG	1 cut(s)	585
PpuMI	RGGWCCY	1 cut(s)	47
Psp5II	RGGWCCY	1 cut(s)	47
PspN4I	GGNNCC	3 cut(s)	48, 251, 486
PspPI	GGNCC	2 cut(s)	47, 485
PspPPI	RGGWCCY	1 cut(s)	47
PstNI	CAGNNNCTG	1 cut(s)	212
RsaI	GTAC	1 cut(s)	577
RsaNI	GTAC	1 cut(s)	576
SaqAI	TTAA	1 cut(s)	69
Sau3AI	GATC	2 cut(s)	18, 355
Sau96I	GGNCC	2 cut(s)	47, 485
ScrFI	CCNGG	2 cut(s)	482, 483
SfaNI	GCATC	3 cut(s)	122, 211, 224
SinI	GGWCC	1 cut(s)	47
SmaI	CCCGGG	1 cut(s)	483
SphI	GCATGC	1 cut(s)	471
Sse9I	AATT	5 cut(s)	36, 122, 301, 472, 545
SspMI	CTAG	1 cut(s)	246
StyD4I	CCNGG	2 cut(s)	480, 481
StyI	CCWWGG	1 cut(s)	579
TaiI	ACGT	2 cut(s)	206, 534
TaqII	GACCGA	1 cut(s)	519
TasI	AATT	5 cut(s)	36, 122, 301, 472, 545
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TscAI	CASTG	1 cut(s)	381
TseFI	GTSAC	1 cut(s)	527
Tsp45I	GTSAC	1 cut(s)	527
TspDTI	ATGAA	3 cut(s)	47, 314, 524
TspGWI	ACGGA	1 cut(s)	561
TspMI	CCCGGG	1 cut(s)	481
TspRI	CASTG	1 cut(s)	381
Van91I	CCANNNNNTGG	1 cut(s)	585
VpaK11BI	GGWCC	1 cut(s)	47
XagI	CCTNNNNNAGG	1 cut(s)	244
XapI	RAATTY	2 cut(s)	301, 545
XceI	RCATGY	1 cut(s)	471
XmaI	CCCGGG	1 cut(s)	481
XspI	CTAG	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.