Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0016217

Physical Location & Seq

Genomic Coordinates Reverse (-)

32585539 .. 32588010

Gene Structure 2472 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1259600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGAGGGTCAGCGGGCAGCTCTGTTTCAATGCCAGCGAATTGGCTGCAACGCCATGTTTTCCGAGGACGACAATCCCGAAGGCTCCTGTCAATACCACGATTCGCCTATATTTCATGATGGGATTAAAGAGTGGAGTTGTTGCAAGCAAAAAAGTCATGATTTCACCTTATTTTTAGAATTACCAGGATGTAAGAGAGGTAAACACACAACAGAGAAACCAGTGTTGGCGAAGCCAAAGCCTAAGGATCCTGTTCCTTCTCCTACTACAGCTCCTGCTACTGATGCATCGTCAAAGCAGTCCTGCTCTAGGTGTCGCCAGGGTTTCTTCTGTTCCGATCATGGTGCACAAGCCAAAGAAATAAACTCAAAGCCTGTAAATGTGGAAACAACTCCACTTCCGGAAAGCATTACTGATGATCAAGGCACTTCTGCTCCACCGAAAAAGATTGTTGACATAAACCAGCCCCAGACATGCAAGAATAAGGGGTGTGGTAAAACTTTCAAAGAGAAAGATAACCACGAGAGTGCATGCAGTTACCATCCCGGGCCTGCTATTTTCCACGACAGAGTGAGAGGGTGGAAGTGCTGTGACGTACACGTAAAGGAATTTGATGAGTTTATGAGCATTCCTCCATGCACCAAAGGTTGGCACAATGCTGATTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0002679 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009814 GO:0009816 GO:0009817 GO:0009987 GO:0012501 GO:0017016 GO:0017048 GO:0019899 GO:0031072 GO:0031267 GO:0031647 GO:0033554 GO:0034050 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0045730 GO:0046872 GO:0046914 GO:0050821 GO:0050832 GO:0050896 GO:0051020 GO:0051704 GO:0051707 GO:0051716 GO:0051879 GO:0065007 GO:0065008 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

CHORD

Protein Analysis

223

Amino Acids

24.63

Weight (kDa)

7.09

Isoelectric Point (pI)

48.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CHORD	PF04968	10 - 69	4.5e-21	CHORD
CHORD	PF04968	158 - 218	3.7e-24	CHORD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51700 AT5G51700
fragaria_vesca	FvH4_7g28300 FvH4_7g28300
malus_domestica	MD01G1187300.v1.1 MD07G1259600.v1.1
prunus_persica	Prupe.2G283700_v2.0.a1
pyrus_communis	pycom07g23300
rosa_chinensis	RchiOBHm_Chr1g0375271
rosa_laevigata	RLG00000026672
rosa_multiflora	Rmu_sc0000554.1_g000035
rosa_roxburghii	Rroxscaffold_4G00282880
rosa_samantha	Rh1AG400400 Rh1BG364000
rosa_wichuraiana	Rw1G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	648
AccIII	TCCGGA	1 cut(s)	400
AciI	CCGC	1 cut(s)	13
AclWI	GGATC	2 cut(s)	242, 255
AcsI	RAATTY	1 cut(s)	608
AfaI	GTAC	1 cut(s)	597
AfiI	CCNNNNNNNGG	2 cut(s)	309, 648
AflIII	ACRYGT	1 cut(s)	598
AgsI	TTSAA	2 cut(s)	29, 505
AjnI	CCWGG	2 cut(s)	184, 318
AjuI	GAANNNNNNNTTGG	2 cut(s)	209, 241
AleI	CACNNNNGTG	1 cut(s)	525
AluBI	AGCT	2 cut(s)	20, 272
AluI	AGCT	2 cut(s)	20, 272
Alw21I	GWGCWC	1 cut(s)	349
Alw44I	GTGCAC	1 cut(s)	345
AlwI	GGATC	2 cut(s)	242, 255
AlwNI	CAGNNNCTG	1 cut(s)	275
Ama87I	CYCGRG	1 cut(s)	545
Aor13HI	TCCGGA	1 cut(s)	400
AoxI	GGCC	1 cut(s)	548
ApaLI	GTGCAC	1 cut(s)	345
ApeKI	GCWGC	2 cut(s)	17, 45
ApoI	RAATTY	1 cut(s)	608
AspS9I	GGNCC	1 cut(s)	548
AsuC2I	CCSGG	2 cut(s)	546, 547
AsuHPI	GGTGA	1 cut(s)	157
AvaI	CYCGRG	1 cut(s)	545
AxyI	CCTNAGG	1 cut(s)	243
BaeGI	GKGCMC	1 cut(s)	349
BamHI	GGATCC	1 cut(s)	247
BauI	CACGAG	1 cut(s)	521
Bbv12I	GWGCWC	1 cut(s)	349
BbvI	GCAGC	2 cut(s)	29, 32
BccI	CCATC	2 cut(s)	113, 549
BcgI	CGANNNNNNTGC	4 cut(s)	27, 61, 326, 360
BciT130I	CCWGG	2 cut(s)	186, 320
BclI	TGATCA	1 cut(s)	418
BcnI	CCSGG	2 cut(s)	546, 547
BfaI	CTAG	1 cut(s)	309
BfmI	CTRYAG	1 cut(s)	267
BisI	GCNGC	2 cut(s)	18, 46
BlsI	GCNGC	2 cut(s)	19, 47
Bme1390I	CCNGG	4 cut(s)	186, 320, 546, 547
BmeT110I	CYCGRG	1 cut(s)	545
BmgT120I	GGNCC	1 cut(s)	548
BmiI	GGNNCC	2 cut(s)	85, 249
BmrFI	CCNGG	4 cut(s)	186, 320, 546, 547
BmsI	GCATC	2 cut(s)	274, 296
BplI	GAGNNNNNCTC	2 cut(s)	616, 648
BpuMI	CCSGG	2 cut(s)	546, 547
BsaAI	YACGTR	1 cut(s)	601
BsaJI	CCNNGG	3 cut(s)	63, 319, 545
BsaWI	WCCGGW	1 cut(s)	400
BsaXI	ACNNNNNCTCC	4 cut(s)	256, 286, 418, 448
Bsc4I	CCNNNNNNNGG	2 cut(s)	309, 648
Bse1I	ACTGG	1 cut(s)	221
Bse21I	CCTNAGG	1 cut(s)	243
BseAI	TCCGGA	1 cut(s)	400
BseBI	CCWGG	2 cut(s)	186, 320
BseDI	CCNNGG	3 cut(s)	63, 319, 545
BseGI	GGATG	2 cut(s)	194, 541
BseLI	CCNNNNNNNGG	2 cut(s)	309, 648
BseNI	ACTGG	1 cut(s)	221
BseSI	GKGCMC	1 cut(s)	349
BseXI	GCAGC	2 cut(s)	29, 32
BshFI	GGCC	1 cut(s)	550
BsiHKAI	GWGCWC	1 cut(s)	349
BsiHKCI	CYCGRG	1 cut(s)	545
BsiSI	CCGG	2 cut(s)	401, 546
BslI	CCNNNNNNNGG	2 cut(s)	309, 648
BsmI	GAATGC	1 cut(s)	627
BsnI	GGCC	1 cut(s)	550
BsoBI	CYCGRG	1 cut(s)	545
Bsp1286I	GDGCHC	1 cut(s)	349
Bsp13I	TCCGGA	1 cut(s)	400
Bsp143I	GATC	3 cut(s)	247, 337, 418
BspACI	CCGC	1 cut(s)	13
BspANI	GGCC	1 cut(s)	550
BspEI	TCCGGA	1 cut(s)	400
BspHI	TCATGA	2 cut(s)	115, 157
BspLI	GGNNCC	2 cut(s)	85, 249
BspPI	GGATC	2 cut(s)	242, 255
BsrI	ACTGG	1 cut(s)	221
BssECI	CCNNGG	3 cut(s)	63, 319, 545
BssMI	GATC	3 cut(s)	247, 337, 418
BssSI	CACGAG	1 cut(s)	521
Bst2BI	CACGAG	1 cut(s)	521
Bst2UI	CCWGG	2 cut(s)	186, 320
BstBAI	YACGTR	1 cut(s)	601
BstC8I	GCNNGC	5 cut(s)	15, 35, 146, 532, 552
BstDEI	CTNAG	1 cut(s)	243
BstENI	CCTNNNNNAGG	1 cut(s)	307
BstF5I	GGATG	2 cut(s)	194, 541
BstKTI	GATC	3 cut(s)	250, 340, 421
BstMBI	GATC	3 cut(s)	247, 337, 418
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstNI	CCWGG	2 cut(s)	186, 320
BstNSI	RCATGY	2 cut(s)	477, 534
BstSCI	CCNGG	4 cut(s)	184, 318, 544, 545
BstSFI	CTRYAG	1 cut(s)	267
BstSLI	GKGCMC	1 cut(s)	349
BstV1I	GCAGC	2 cut(s)	29, 32
BstX2I	RGATCY	1 cut(s)	247
BstXI	CCANNNNNNTGG	1 cut(s)	41
BstYI	RGATCY	1 cut(s)	247
Bsu36I	CCTNAGG	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	550
BtsCI	GGATG	2 cut(s)	194, 541
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	5 cut(s)	15, 35, 146, 532, 552
CaiI	CAGNNNCTG	1 cut(s)	275
CciI	TCATGA	2 cut(s)	115, 157
Cfr13I	GGNCC	1 cut(s)	548
Cfr9I	CCCGGG	1 cut(s)	545
Csp6I	GTAC	1 cut(s)	596
CviAII	CATG	7 cut(s)	55, 116, 158, 341, 474, 531, 636
CviQI	GTAC	1 cut(s)	596
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	3 cut(s)	249, 339, 420
DpnII	GATC	3 cut(s)	247, 337, 418
Eco81I	CCTNAGG	1 cut(s)	243
Eco88I	CYCGRG	1 cut(s)	545
EcoNI	CCTNNNNNAGG	1 cut(s)	307
EcoRII	CCWGG	2 cut(s)	184, 318
EcoT22I	ATGCAT	1 cut(s)	289
FaeI	CATG	7 cut(s)	58, 119, 161, 344, 477, 534, 639
FatI	CATG	7 cut(s)	54, 115, 157, 340, 473, 530, 635
FauI	CCCGC	1 cut(s)	6
FbaI	TGATCA	1 cut(s)	418
Fnu4HI	GCNGC	2 cut(s)	18, 46
FokI	GGATG	2 cut(s)	201, 528
Fsp4HI	GCNGC	2 cut(s)	18, 46
FspBI	CTAG	1 cut(s)	309
GluI	GCNGC	2 cut(s)	18, 46
HaeIII	GGCC	1 cut(s)	550
HapII	CCGG	2 cut(s)	401, 546
Hin1II	CATG	7 cut(s)	58, 119, 161, 344, 477, 534, 639
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HinfI	GANTC	2 cut(s)	101, 662
HpaII	CCGG	2 cut(s)	401, 546
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	4 cut(s)	203, 347, 454, 598
Hpy188I	TCNGA	2 cut(s)	64, 337
Hpy188III	TCNNGA	5 cut(s)	77, 116, 158, 401, 666
Hpy8I	GTNNAC	4 cut(s)	203, 347, 454, 598
HpyAV	CCTTC	2 cut(s)	74, 267
HpyCH4IV	ACGT	2 cut(s)	594, 600
HpyCH4V	TGCA	8 cut(s)	48, 144, 287, 347, 477, 530, 534, 639
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	2 cut(s)	594, 600
Hsp92II	CATG	7 cut(s)	58, 119, 161, 344, 477, 534, 639
Kpn2I	TCCGGA	1 cut(s)	400
Ksp22I	TGATCA	1 cut(s)	418
Kzo9I	GATC	3 cut(s)	247, 337, 418
LmnI	GCTCC	3 cut(s)	89, 277, 439
Lsp1109I	GCAGC	2 cut(s)	29, 32
LweI	GCATC	2 cut(s)	274, 296
MaeI	CTAG	1 cut(s)	309
MaeII	ACGT	2 cut(s)	594, 600
MaeIII	GTNAC	2 cut(s)	536, 590
MalI	GATC	3 cut(s)	249, 339, 420
MboI	GATC	3 cut(s)	247, 337, 418
MboII	GAAGA	1 cut(s)	319
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	1 cut(s)	349
MluCI	AATT	3 cut(s)	39, 179, 608
MnlI	CCTC	4 cut(s)	58, 191, 569, 642
Mph1103I	ATGCAT	1 cut(s)	289
MroI	TCCGGA	1 cut(s)	400
MseI	TTAA	1 cut(s)	126
MslI	CAYNNNNRTG	1 cut(s)	525
MspA1I	CMGCKG	1 cut(s)	13
MspI	CCGG	2 cut(s)	401, 546
MspR9I	CCNGG	4 cut(s)	186, 320, 546, 547
Mva1269I	GAATGC	1 cut(s)	627
MvaI	CCWGG	2 cut(s)	186, 320
MwoI	GCNNNNNNNGC	1 cut(s)	284
NciI	CCSGG	2 cut(s)	546, 547
NdeII	GATC	3 cut(s)	247, 337, 418
NlaIII	CATG	7 cut(s)	58, 119, 161, 344, 477, 534, 639
NlaIV	GGNNCC	2 cut(s)	85, 249
NmuCI	GTSAC	1 cut(s)	590
NsiI	ATGCAT	1 cut(s)	289
NspI	RCATGY	2 cut(s)	477, 534
OliI	CACNNNNGTG	1 cut(s)	525
PaeI	GCATGC	1 cut(s)	534
PagI	TCATGA	2 cut(s)	115, 157
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PctI	GAATGC	1 cut(s)	627
PfeI	GAWTC	2 cut(s)	101, 662
PflMI	CCANNNNNTGG	1 cut(s)	648
PkrI	GCNGC	2 cut(s)	19, 47
Ppu21I	YACGTR	1 cut(s)	601
Psp6I	CCWGG	2 cut(s)	184, 318
PspGI	CCWGG	2 cut(s)	184, 318
PspN4I	GGNNCC	2 cut(s)	85, 249
PspPI	GGNCC	1 cut(s)	548
PstNI	CAGNNNCTG	1 cut(s)	275
PsuI	RGATCY	1 cut(s)	247
RsaI	GTAC	1 cut(s)	597
RsaNI	GTAC	1 cut(s)	596
RseI	CAYNNNNRTG	1 cut(s)	525
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	2 cut(s)	18, 46
Sau3AI	GATC	3 cut(s)	247, 337, 418
Sau96I	GGNCC	1 cut(s)	548
ScrFI	CCNGG	4 cut(s)	186, 320, 546, 547
SduI	GDGCHC	1 cut(s)	349
SetI	ASST	8 cut(s)	22, 170, 202, 274, 314, 597, 603, 649
SfaNI	GCATC	2 cut(s)	274, 296
SfcI	CTRYAG	1 cut(s)	267
SmaI	CCCGGG	1 cut(s)	547
SmiMI	CAYNNNNRTG	1 cut(s)	525
SphI	GCATGC	1 cut(s)	534
Sse9I	AATT	3 cut(s)	39, 179, 608
SsiI	CCGC	1 cut(s)	13
SspMI	CTAG	1 cut(s)	309
StyD4I	CCNGG	4 cut(s)	184, 318, 544, 545
TaiI	ACGT	2 cut(s)	597, 603
TasI	AATT	3 cut(s)	39, 179, 608
TfiI	GAWTC	2 cut(s)	101, 662
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	1 cut(s)	228
TseFI	GTSAC	1 cut(s)	590
TseI	GCWGC	2 cut(s)	17, 45
Tsp45I	GTSAC	1 cut(s)	590
TspDTI	ATGAA	1 cut(s)	104
TspMI	CCCGGG	1 cut(s)	545
TspRI	CASTG	1 cut(s)	228
Van91I	CCANNNNNTGG	1 cut(s)	648
VneI	GTGCAC	1 cut(s)	345
XagI	CCTNNNNNAGG	1 cut(s)	307
XapI	RAATTY	1 cut(s)	608
XceI	RCATGY	2 cut(s)	477, 534
XmaI	CCCGGG	1 cut(s)	545
XspI	CTAG	1 cut(s)	309
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.