Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0016217

Physical Location & Seq

Genomic Coordinates Reverse (-)

28145748 .. 28148600

Gene Structure 2853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G283700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGAGGGTCAGCAGACAGCTCTGTTTAAATGCCAGCGAATTGGCTGTAACGCCAATTTTTCCGAGGACGACAATCCCGAAGGTTCCTGCCAATACCATGATTCGCCTATATTTCATGATGGGATTAAAGAGTGGAGTTGTTGCAAGAAAAGAAGTCATGATTTCAGCTTATTTTTAGAAATTAAAGGTTGCAAGACAGGTAAACACACAACAGAGAAACCAGTGTTGTCAAAGGCGAAGCCTAAGACTCCTGTTTCTGCTCCTACCGCTCCCCCTGCAACTGATGCATCGTCAAAAGAATCATGCTCTAGGTGTCGGCAGGGTTTCTTCTGTTCGGATCATGGTTCACAAGCCAAAGAAATGAATTCAAAGCCTGTAAATGTGGCCACAACTCCACTTGCTGAAAGCATTACAGATGTTGAAGGCACTTCTGCTCCATCTAAAAAGATTGTTGGCATAAACGAGCCCCAAATTTGCAAAAATAAAGGGTGTGGCAAAACTTTTAAAGAGAAGGATAACCATGAGGCTGCATGCAGTTACCATCCGGGGCCTGCTATTTTCCACGATCGAGTGAGAGGGTGGCAGTGCTGCGACGTTCATGTAAAGGAATTTGATGAGTTCATGAGCATCCGTCCATGCACTAAGGGGTGGCACAATGCTGATCCAGTATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0002679 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009814 GO:0009816 GO:0009817 GO:0009987 GO:0012501 GO:0017016 GO:0017048 GO:0019899 GO:0031072 GO:0031267 GO:0031647 GO:0033554 GO:0034050 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0045730 GO:0046872 GO:0046914 GO:0050821 GO:0050832 GO:0050896 GO:0051020 GO:0051704 GO:0051707 GO:0051716 GO:0051879 GO:0065007 GO:0065008 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

CHORD

Protein Analysis

225

Amino Acids

24.67

Weight (kDa)

7.88

Isoelectric Point (pI)

42.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51700 AT5G51700
fragaria_vesca	FvH4_7g28300 FvH4_7g28300
malus_domestica	MD01G1187300.v1.1 MD07G1259600.v1.1
prunus_persica	Prupe.2G283700_v2.0.a1
pyrus_communis	pycom07g23300
rosa_chinensis	RchiOBHm_Chr1g0375271
rosa_laevigata	RLG00000026672
rosa_multiflora	Rmu_sc0000554.1_g000035
rosa_roxburghii	Rroxscaffold_4G00282880
rosa_samantha	Rh1AG400400 Rh1BG364000
rosa_wichuraiana	Rw1G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	269
AciI	CCGC	1 cut(s)	267
AclWI	GGATC	2 cut(s)	345, 656
AcoI	YGGCCR	1 cut(s)	384
AcsI	RAATTY	3 cut(s)	364, 471, 608
AgsI	TTSAA	2 cut(s)	369, 422
AluBI	AGCT	2 cut(s)	20, 168
AluI	AGCT	2 cut(s)	20, 168
AlwI	GGATC	2 cut(s)	345, 656
AoxI	GGCC	2 cut(s)	384, 548
ApeKI	GCWGC	2 cut(s)	527, 588
ApoI	RAATTY	3 cut(s)	364, 471, 608
AspS9I	GGNCC	1 cut(s)	548
AsuC2I	CCSGG	1 cut(s)	546
BalI	TGGCCA	1 cut(s)	386
BanII	GRGCYC	1 cut(s)	468
BbvI	GCAGC	2 cut(s)	514, 575
BccI	CCATC	3 cut(s)	113, 445, 549
BcnI	CCSGG	1 cut(s)	546
BfaI	CTAG	1 cut(s)	309
BisI	GCNGC	2 cut(s)	528, 589
BlsI	GCNGC	2 cut(s)	529, 590
Bme1390I	CCNGG	1 cut(s)	546
BmgT120I	GGNCC	1 cut(s)	548
BmiI	GGNNCC	2 cut(s)	85, 549
BmrFI	CCNGG	1 cut(s)	546
BmsI	GCATC	3 cut(s)	274, 296, 636
BpuMI	CCSGG	1 cut(s)	546
BsaJI	CCNNGG	2 cut(s)	63, 545
BsaXI	ACNNNNNCTCC	2 cut(s)	418, 448
Bse1I	ACTGG	2 cut(s)	221, 665
BseDI	CCNNGG	2 cut(s)	63, 545
BseGI	GGATG	2 cut(s)	541, 627
BseNI	ACTGG	2 cut(s)	221, 665
BseXI	GCAGC	2 cut(s)	514, 575
Bsh1285I	CGRYCG	1 cut(s)	568
BshFI	GGCC	2 cut(s)	386, 550
BsiEI	CGRYCG	1 cut(s)	568
BsiSI	CCGG	1 cut(s)	545
BsnI	GGCC	2 cut(s)	386, 550
Bsp1286I	GDGCHC	1 cut(s)	468
Bsp143I	GATC	3 cut(s)	337, 565, 661
BspACI	CCGC	1 cut(s)	267
BspANI	GGCC	2 cut(s)	386, 550
BspHI	TCATGA	3 cut(s)	115, 157, 621
BspLI	GGNNCC	2 cut(s)	85, 549
BspPI	GGATC	2 cut(s)	345, 656
BsrBI	CCGCTC	1 cut(s)	269
BsrI	ACTGG	2 cut(s)	221, 665
BssECI	CCNNGG	2 cut(s)	63, 545
BssMI	GATC	3 cut(s)	337, 565, 661
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstC8I	GCNNGC	3 cut(s)	35, 532, 552
BstDEI	CTNAG	2 cut(s)	243, 642
BstF5I	GGATG	2 cut(s)	541, 627
BstKTI	GATC	3 cut(s)	340, 568, 664
BstMBI	GATC	3 cut(s)	337, 565, 661
BstMCI	CGRYCG	1 cut(s)	568
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 275, 284
BstNSI	RCATGY	1 cut(s)	534
BstSCI	CCNGG	1 cut(s)	544
BstV1I	GCAGC	2 cut(s)	514, 575
BstXI	CCANNNNNNTGG	1 cut(s)	41
BsuRI	GGCC	2 cut(s)	386, 550
BtsCI	GGATG	2 cut(s)	541, 627
BtsI	GCAGTG	1 cut(s)	590
BtsIMutI	CAGTG	2 cut(s)	228, 590
Cac8I	GCNNGC	3 cut(s)	35, 532, 552
CciI	TCATGA	3 cut(s)	115, 157, 621
Cfr13I	GGNCC	1 cut(s)	548
DdeI	CTNAG	2 cut(s)	243, 642
DpnI	GATC	3 cut(s)	339, 567, 663
DpnII	GATC	3 cut(s)	337, 565, 661
DraI	TTTAAA	2 cut(s)	28, 505
EaeI	YGGCCR	1 cut(s)	384
Eco24I	GRGCYC	1 cut(s)	468
EcoO109I	RGGNCCY	1 cut(s)	548
EcoRI	GAATTC	1 cut(s)	364
EcoT22I	ATGCAT	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	468
Fnu4HI	GCNGC	2 cut(s)	528, 589
FokI	GGATG	2 cut(s)	528, 614
FriOI	GRGCYC	1 cut(s)	468
Fsp4HI	GCNGC	2 cut(s)	528, 589
FspBI	CTAG	1 cut(s)	309
GluI	GCNGC	2 cut(s)	528, 589
HaeIII	GGCC	2 cut(s)	386, 550
HapII	CCGG	1 cut(s)	545
HinfI	GANTC	3 cut(s)	101, 247, 299
HpaII	CCGG	1 cut(s)	545
Hpy166II	GTNNAC	2 cut(s)	203, 347
Hpy188I	TCNGA	2 cut(s)	64, 337
Hpy188III	TCNNGA	4 cut(s)	77, 116, 158, 622
Hpy8I	GTNNAC	2 cut(s)	203, 347
Hpy99I	CGWCG	1 cut(s)	596
HpyAV	CCTTC	3 cut(s)	74, 416, 505
HpyCH4IV	ACGT	1 cut(s)	594
HpyCH4V	TGCA	8 cut(s)	144, 192, 278, 287, 477, 530, 534, 639
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 275, 284
HpyF3I	CTNAG	2 cut(s)	243, 642
HpySE526I	ACGT	1 cut(s)	594
Kzo9I	GATC	3 cut(s)	337, 565, 661
LmnI	GCTCC	3 cut(s)	265, 274, 439
Lsp1109I	GCAGC	2 cut(s)	514, 575
LweI	GCATC	3 cut(s)	274, 296, 636
MaeI	CTAG	1 cut(s)	309
MaeII	ACGT	1 cut(s)	594
MaeIII	GTNAC	2 cut(s)	47, 536
MalI	GATC	3 cut(s)	339, 567, 663
MbiI	CCGCTC	1 cut(s)	269
MboI	GATC	3 cut(s)	337, 565, 661
MboII	GAAGA	1 cut(s)	319
MhlI	GDGCHC	1 cut(s)	468
MlsI	TGGCCA	1 cut(s)	386
MluCI	AATT	6 cut(s)	39, 55, 180, 364, 471, 608
MluNI	TGGCCA	1 cut(s)	386
MlyI	GAGTC	1 cut(s)	241
MnlI	CCTC	3 cut(s)	58, 517, 569
Mox20I	TGGCCA	1 cut(s)	386
Mph1103I	ATGCAT	1 cut(s)	289
MscI	TGGCCA	1 cut(s)	386
MseI	TTAA	5 cut(s)	27, 126, 183, 504, 673
Msp20I	TGGCCA	1 cut(s)	386
MspI	CCGG	1 cut(s)	545
MspR9I	CCNGG	1 cut(s)	546
MwoI	GCNNNNNNNGC	3 cut(s)	266, 275, 284
NciI	CCSGG	1 cut(s)	546
NdeII	GATC	3 cut(s)	337, 565, 661
NlaIV	GGNNCC	2 cut(s)	85, 549
NsiI	ATGCAT	1 cut(s)	289
NspI	RCATGY	1 cut(s)	534
PaeI	GCATGC	1 cut(s)	534
PagI	TCATGA	3 cut(s)	115, 157, 621
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PfeI	GAWTC	2 cut(s)	101, 299
PkrI	GCNGC	2 cut(s)	529, 590
Ple19I	CGATCG	1 cut(s)	568
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
PspN4I	GGNNCC	2 cut(s)	85, 549
PspPI	GGNCC	1 cut(s)	548
PvuI	CGATCG	1 cut(s)	568
SaqAI	TTAA	5 cut(s)	27, 126, 183, 504, 673
SatI	GCNGC	2 cut(s)	528, 589
Sau3AI	GATC	3 cut(s)	337, 565, 661
Sau96I	GGNCC	1 cut(s)	548
SchI	GAGTC	1 cut(s)	241
ScrFI	CCNGG	1 cut(s)	546
SduI	GDGCHC	1 cut(s)	468
SetI	ASST	7 cut(s)	22, 85, 170, 190, 202, 314, 597
SfaNI	GCATC	3 cut(s)	274, 296, 636
SphI	GCATGC	1 cut(s)	534
Sse9I	AATT	6 cut(s)	39, 55, 180, 364, 471, 608
SsiI	CCGC	1 cut(s)	267
SspMI	CTAG	1 cut(s)	309
StyD4I	CCNGG	1 cut(s)	544
TaiI	ACGT	1 cut(s)	597
TaqI	TCGA	1 cut(s)	568
TasI	AATT	6 cut(s)	39, 55, 180, 364, 471, 608
TfiI	GAWTC	2 cut(s)	101, 299
Tru1I	TTAA	5 cut(s)	27, 126, 183, 504, 673
Tru9I	TTAA	5 cut(s)	27, 126, 183, 504, 673
TscAI	CASTG	2 cut(s)	228, 590
TseI	GCWGC	2 cut(s)	527, 588
TspDTI	ATGAA	4 cut(s)	104, 377, 587, 610
TspGWI	ACGGA	1 cut(s)	620
TspRI	CASTG	2 cut(s)	228, 590
XapI	RAATTY	3 cut(s)	364, 471, 608
XceI	RCATGY	1 cut(s)	534
XspI	CTAG	1 cut(s)	309
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.