Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0016217

Physical Location & Seq

Genomic Coordinates Reverse (-)

20989306 .. 20991813

Gene Structure 2508 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g28300.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGAGGGCGAACCGGCAGCTCTGCTTAAATGCCAGCGAATCGGCTGCAACGCCACCTTTTCCGACGACAACAACCCCGAAGGCTCTTGCCAATACCACGATGCGGGACCTATATTTCATGATGGGATTAAAGAGTGGAGTTGTTGCAAGAAGAGAAGTCATGATTTCAGCTTGTTTTTAGAATTAGAAGGATGCAAGACTGGTAAACACACAACAGATAAACCAGTTTTGGCAAAGCCGAAACCTAGGACTCCGGTTTCCGTTCCTGTGTCAGCTCCTACAGCTGATGCATCATCAAAACAGTCCTGCGCTAGGTGTCGACAGGGTTTCTTCTGTTCAGATCACGGTTCACAAGCCAAAGAAATGAATTCAAAGCCTGTAAATGTAGTTACAACACCACTTACTGAAAGCATTACAGATGATCAAGGCACTTCTGCACCACCAAAAAAGATTACAGACATAAACCAGCCCCAAACTTGTAAAAATAAAGGTTGTGGTCAAACTTTTAAAGAGAAGGATAACCATGAGACGGCATGCAGTTACCACCCGGGCCCTGCTGTTTTCCATGACCGAGTGAGAGGGTGGAAGTGCTGTGACATTCATGTAAAGGAATTTGACGAGTTTGTGAACATCCCTCCATGTACCAAGGGTTGGCACAATGCTGACCCAGTCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0002679 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009814 GO:0009816 GO:0009817 GO:0009987 GO:0012501 GO:0017016 GO:0017048 GO:0019899 GO:0031072 GO:0031267 GO:0031647 GO:0033554 GO:0034050 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0045730 GO:0046872 GO:0046914 GO:0050821 GO:0050832 GO:0050896 GO:0051020 GO:0051704 GO:0051707 GO:0051716 GO:0051879 GO:0065007 GO:0065008 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

CHORD

Protein Analysis

226

Amino Acids

24.72

Weight (kDa)

7.09

Isoelectric Point (pI)

40.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CHORD	PF04968	10 - 70	1.4e-23	CHORD
CHORD	PF04968	159 - 219	1.1e-23	CHORD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51700 AT5G51700
fragaria_vesca	FvH4_7g28300 FvH4_7g28300
malus_domestica	MD01G1187300.v1.1 MD07G1259600.v1.1
prunus_persica	Prupe.2G283700_v2.0.a1
pyrus_communis	pycom07g23300
rosa_chinensis	RchiOBHm_Chr1g0375271
rosa_laevigata	RLG00000026672
rosa_multiflora	Rmu_sc0000554.1_g000035
rosa_roxburghii	Rroxscaffold_4G00282880
rosa_samantha	Rh1AG400400 Rh1BG364000
rosa_wichuraiana	Rw1G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	651
AccI	GTMKAC	1 cut(s)	319
AciI	CCGC	1 cut(s)	104
AcsI	RAATTY	2 cut(s)	367, 611
AfaI	GTAC	1 cut(s)	643
AfiI	CCNNNNNNNGG	4 cut(s)	103, 312, 529, 651
AgsI	TTSAA	1 cut(s)	372
AluBI	AGCT	4 cut(s)	20, 171, 275, 284
AluI	AGCT	4 cut(s)	20, 171, 275, 284
Alw26I	GTCTC	1 cut(s)	521
Ama87I	CYCGRG	1 cut(s)	547
AoxI	GGCC	1 cut(s)	550
ApaI	GGGCCC	1 cut(s)	554
ApeKI	GCWGC	2 cut(s)	17, 45
ApoI	RAATTY	2 cut(s)	367, 611
AspA2I	CCTAGG	1 cut(s)	245
AspLEI	GCGC	1 cut(s)	311
AspS9I	GGNCC	3 cut(s)	107, 550, 551
AsuC2I	CCSGG	2 cut(s)	548, 549
AvaI	CYCGRG	1 cut(s)	547
AvaII	GGWCC	1 cut(s)	107
AvrII	CCTAGG	1 cut(s)	245
BaeGI	GKGCMC	1 cut(s)	554
BanII	GRGCYC	1 cut(s)	554
BbvI	GCAGC	2 cut(s)	29, 32
BccI	CCATC	1 cut(s)	116
BceAI	ACGGC	1 cut(s)	546
BcgI	CGANNNNNNTGC	2 cut(s)	27, 61
BclI	TGATCA	1 cut(s)	421
BcnI	CCSGG	2 cut(s)	548, 549
BcoDI	GTCTC	1 cut(s)	521
BfaI	CTAG	2 cut(s)	246, 312
BfmI	CTRYAG	1 cut(s)	279
BisI	GCNGC	2 cut(s)	18, 46
BlnI	CCTAGG	1 cut(s)	245
BlsI	GCNGC	2 cut(s)	19, 47
Bme1390I	CCNGG	2 cut(s)	548, 549
Bme18I	GGWCC	1 cut(s)	107
BmeT110I	CYCGRG	1 cut(s)	547
BmgT120I	GGNCC	3 cut(s)	107, 550, 551
BmiI	GGNNCC	2 cut(s)	108, 552
BmrFI	CCNGG	2 cut(s)	548, 549
BmrI	ACTGGG	1 cut(s)	662
BmsI	GCATC	4 cut(s)	91, 182, 277, 299
BmuI	ACTGGG	1 cut(s)	662
BpuMI	CCSGG	2 cut(s)	548, 549
BsaJI	CCNNGG	3 cut(s)	245, 547, 645
BsaWI	WCCGGW	1 cut(s)	253
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 312, 529, 651
Bse118I	RCCGGY	1 cut(s)	13
Bse1I	ACTGG	3 cut(s)	205, 224, 668
BseDI	CCNNGG	3 cut(s)	245, 547, 645
BseGI	GGATG	2 cut(s)	197, 630
BseLI	CCNNNNNNNGG	4 cut(s)	103, 312, 529, 651
BseNI	ACTGG	3 cut(s)	205, 224, 668
BseSI	GKGCMC	1 cut(s)	554
BseXI	GCAGC	2 cut(s)	29, 32
BsgI	GTGCAG	1 cut(s)	420
BshFI	GGCC	1 cut(s)	552
BsiHKCI	CYCGRG	1 cut(s)	547
BsiSI	CCGG	3 cut(s)	14, 254, 548
BslFI	GGGAC	2 cut(s)	120, 656
BslI	CCNNNNNNNGG	4 cut(s)	103, 312, 529, 651
BsmAI	GTCTC	1 cut(s)	521
BsmBI	CGTCTC	1 cut(s)	521
BsmFI	GGGAC	2 cut(s)	120, 656
BsnI	GGCC	1 cut(s)	552
BsoBI	CYCGRG	1 cut(s)	547
Bsp120I	GGGCCC	1 cut(s)	550
Bsp1286I	GDGCHC	1 cut(s)	554
Bsp143I	GATC	2 cut(s)	340, 421
BspACI	CCGC	1 cut(s)	104
BspANI	GGCC	1 cut(s)	552
BspHI	TCATGA	2 cut(s)	118, 160
BspLI	GGNNCC	2 cut(s)	108, 552
BsrFI	RCCGGY	1 cut(s)	13
BsrI	ACTGG	3 cut(s)	205, 224, 668
BssAI	RCCGGY	1 cut(s)	13
BssECI	CCNNGG	3 cut(s)	245, 547, 645
BssMI	GATC	2 cut(s)	340, 421
BssT1I	CCWWGG	2 cut(s)	245, 645
Bst4CI	ACNGT	2 cut(s)	303, 347
Bst6I	CTCTTC	1 cut(s)	146
BstC8I	GCNNGC	2 cut(s)	35, 535
BstENI	CCTNNNNNAGG	1 cut(s)	310
BstF5I	GGATG	2 cut(s)	197, 630
BstHHI	GCGC	1 cut(s)	311
BstKTI	GATC	2 cut(s)	343, 424
BstMAI	GTCTC	1 cut(s)	521
BstMBI	GATC	2 cut(s)	340, 421
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstNSI	RCATGY	1 cut(s)	537
BstSCI	CCNGG	2 cut(s)	546, 547
BstSFI	CTRYAG	1 cut(s)	279
BstSLI	GKGCMC	1 cut(s)	554
BstV1I	GCAGC	2 cut(s)	29, 32
BsuRI	GGCC	1 cut(s)	552
BtsCI	GGATG	2 cut(s)	197, 630
Cac8I	GCNNGC	2 cut(s)	35, 535
CciI	TCATGA	2 cut(s)	118, 160
CfoI	GCGC	1 cut(s)	311
Cfr10I	RCCGGY	1 cut(s)	13
Cfr13I	GGNCC	3 cut(s)	107, 550, 551
Cfr9I	CCCGGG	1 cut(s)	547
Csp6I	GTAC	1 cut(s)	642
CviAII	CATG	7 cut(s)	119, 161, 524, 534, 566, 602, 639
CviQI	GTAC	1 cut(s)	642
DpnI	GATC	2 cut(s)	342, 423
DpnII	GATC	2 cut(s)	340, 421
DraI	TTTAAA	1 cut(s)	508
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Eco130I	CCWWGG	2 cut(s)	245, 645
Eco24I	GRGCYC	1 cut(s)	554
Eco47I	GGWCC	1 cut(s)	107
Eco88I	CYCGRG	1 cut(s)	547
EcoNI	CCTNNNNNAGG	1 cut(s)	310
EcoO109I	RGGNCCY	2 cut(s)	107, 551
EcoRI	GAATTC	1 cut(s)	367
EcoT14I	CCWWGG	2 cut(s)	245, 645
EcoT22I	ATGCAT	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	554
ErhI	CCWWGG	2 cut(s)	245, 645
Esp3I	CGTCTC	1 cut(s)	521
FaeI	CATG	7 cut(s)	122, 164, 527, 537, 569, 605, 642
FaiI	YATR	9 cut(s)	113, 120, 162, 461, 525, 535, 567, 603, 640
FaqI	GGGAC	2 cut(s)	120, 656
FatI	CATG	7 cut(s)	118, 160, 523, 533, 565, 601, 638
FauI	CCCGC	1 cut(s)	97
FbaI	TGATCA	1 cut(s)	421
FblI	GTMKAC	1 cut(s)	319
Fnu4HI	GCNGC	2 cut(s)	18, 46
FokI	GGATG	2 cut(s)	204, 617
FriOI	GRGCYC	1 cut(s)	554
Fsp4HI	GCNGC	2 cut(s)	18, 46
FspBI	CTAG	2 cut(s)	246, 312
GlaI	GCGC	1 cut(s)	310
GluI	GCNGC	2 cut(s)	18, 46
HaeIII	GGCC	1 cut(s)	552
HapII	CCGG	3 cut(s)	14, 254, 548
HhaI	GCGC	1 cut(s)	311
Hin1II	CATG	7 cut(s)	122, 164, 527, 537, 569, 605, 642
Hin6I	GCGC	1 cut(s)	309
HinP1I	GCGC	1 cut(s)	309
HincII	GTYRAC	1 cut(s)	320
HindII	GTYRAC	1 cut(s)	320
HinfI	GANTC	2 cut(s)	39, 250
HpaII	CCGG	3 cut(s)	14, 254, 548
Hpy166II	GTNNAC	4 cut(s)	206, 320, 350, 628
Hpy188I	TCNGA	2 cut(s)	64, 340
Hpy188III	TCNNGA	2 cut(s)	119, 161
Hpy8I	GTNNAC	4 cut(s)	206, 320, 350, 628
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	3 cut(s)	74, 182, 508
HpyCH4III	ACNGT	2 cut(s)	303, 347
HpyCH4V	TGCA	6 cut(s)	48, 147, 195, 290, 437, 537
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
Hsp92II	CATG	7 cut(s)	122, 164, 527, 537, 569, 605, 642
HspAI	GCGC	1 cut(s)	309
Ksp22I	TGATCA	1 cut(s)	421
Kzo9I	GATC	2 cut(s)	340, 421
LmnI	GCTCC	1 cut(s)	280
Lsp1109I	GCAGC	2 cut(s)	29, 32
LweI	GCATC	4 cut(s)	91, 182, 277, 299
MaeI	CTAG	2 cut(s)	246, 312
MaeIII	GTNAC	3 cut(s)	388, 539, 593
MalI	GATC	2 cut(s)	342, 423
MboI	GATC	2 cut(s)	340, 421
MboII	GAAGA	2 cut(s)	163, 322
MhlI	GDGCHC	1 cut(s)	554
MluCI	AATT	3 cut(s)	182, 367, 611
MlyI	GAGTC	1 cut(s)	244
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	2 cut(s)	572, 645
Mph1103I	ATGCAT	1 cut(s)	292
MseI	TTAA	4 cut(s)	27, 129, 507, 676
MspA1I	CMGCKG	1 cut(s)	284
MspI	CCGG	3 cut(s)	14, 254, 548
MspR9I	CCNGG	2 cut(s)	548, 549
MwoI	GCNNNNNNNGC	1 cut(s)	281
NciI	CCSGG	2 cut(s)	548, 549
NdeII	GATC	2 cut(s)	340, 421
NlaIII	CATG	7 cut(s)	122, 164, 527, 537, 569, 605, 642
NlaIV	GGNNCC	2 cut(s)	108, 552
NmuCI	GTSAC	1 cut(s)	593
NsiI	ATGCAT	1 cut(s)	292
NspI	RCATGY	1 cut(s)	537
PaeI	GCATGC	1 cut(s)	537
PagI	TCATGA	2 cut(s)	118, 160
PfeI	GAWTC	1 cut(s)	39
PflFI	GACNNNGTC	1 cut(s)	668
PflMI	CCANNNNNTGG	1 cut(s)	651
PkrI	GCNGC	2 cut(s)	19, 47
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
PpuMI	RGGWCCY	1 cut(s)	107
Psp5II	RGGWCCY	1 cut(s)	107
PspN4I	GGNNCC	2 cut(s)	108, 552
PspOMI	GGGCCC	1 cut(s)	550
PspPI	GGNCC	3 cut(s)	107, 550, 551
PspPPI	RGGWCCY	1 cut(s)	107
PsyI	GACNNNGTC	1 cut(s)	668
PvuII	CAGCTG	1 cut(s)	284
RsaI	GTAC	1 cut(s)	643
RsaNI	GTAC	1 cut(s)	642
SalI	GTCGAC	1 cut(s)	318
SaqAI	TTAA	4 cut(s)	27, 129, 507, 676
SatI	GCNGC	2 cut(s)	18, 46
Sau3AI	GATC	2 cut(s)	340, 421
Sau96I	GGNCC	3 cut(s)	107, 550, 551
SchI	GAGTC	1 cut(s)	244
ScrFI	CCNGG	2 cut(s)	548, 549
SduI	GDGCHC	1 cut(s)	554
SetI	ASST	9 cut(s)	22, 59, 112, 173, 247, 277, 286, 317, 493
SfaNI	GCATC	4 cut(s)	91, 182, 277, 299
SfcI	CTRYAG	1 cut(s)	279
SinI	GGWCC	1 cut(s)	107
SmaI	CCCGGG	1 cut(s)	549
SphI	GCATGC	1 cut(s)	537
Sse9I	AATT	3 cut(s)	182, 367, 611
SsiI	CCGC	1 cut(s)	104
SspMI	CTAG	2 cut(s)	246, 312
StyD4I	CCNGG	2 cut(s)	546, 547
StyI	CCWWGG	2 cut(s)	245, 645
TaaI	ACNGT	2 cut(s)	303, 347
TaqI	TCGA	1 cut(s)	319
TaqII	GACCGA	1 cut(s)	585
TasI	AATT	3 cut(s)	182, 367, 611
TfiI	GAWTC	1 cut(s)	39
Tru1I	TTAA	4 cut(s)	27, 129, 507, 676
Tru9I	TTAA	4 cut(s)	27, 129, 507, 676
TseFI	GTSAC	1 cut(s)	593
TseI	GCWGC	2 cut(s)	17, 45
Tsp45I	GTSAC	1 cut(s)	593
TspDTI	ATGAA	3 cut(s)	107, 380, 590
TspGWI	ACGGA	1 cut(s)	250
TspMI	CCCGGG	1 cut(s)	547
Tth111I	GACNNNGTC	1 cut(s)	668
Van91I	CCANNNNNTGG	1 cut(s)	651
VpaK11BI	GGWCC	1 cut(s)	107
XagI	CCTNNNNNAGG	1 cut(s)	310
XapI	RAATTY	2 cut(s)	367, 611
XceI	RCATGY	1 cut(s)	537
XmaI	CCCGGG	1 cut(s)	547
XmaJI	CCTAGG	1 cut(s)	245
XmiI	GTMKAC	1 cut(s)	319
XspI	CTAG	2 cut(s)	246, 312
Zsp2I	ATGCAT	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.