Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0016217

Physical Location & Seq

Genomic Coordinates Reverse (-)

24281723 .. 24284051

Gene Structure 2329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g23300.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGAAAATGGGAATAATCAAGTACGAATCTATTTCTTGTACTCTGTTGGACTTTCCAGTCAGTCTTTCTTTTCTGGTCTTCCTCCCCCGGTCCTCCCCCTCCTCCGTCGCCTCCCTCCTCCGGCGTCGTCTTCTTCTTGTTTCCCTTCTCCTTTTCTGTTATTTTTCTCAGGCAGACACGGAGACCGACGAGAGTGGATGGAGGGTCAGCGGGCAGCTCTGTTGCAATGCCAGCGAATTGGCTGCAACGCCATGTTTTCCGAGGACGACAATCCTGAAGGCTCCTGTCAATACCATGATTCGCCTATATTTCATGATGGGATTAAAGAGTGGAGTTGTTGCAAGCAAAGAAGTCATGATTTCACCTTATTTTTAGAATTACCAGGATGTAAGACGGGTAAACACACAACAGAGAAACCAGTGTTGGCGAAGCCGAAGCCTAAGGATCCTGTTCCTGCTCCTACTACAGCTCCTGCTACTGATGCATCATCAAGGGAGTCCTGCTCTAGGTGTCGCCAGGGTTTCTTCTGTTCCGATCATGGTGCACAAGCCAAAGAAATAAACTCAAAGCCTGTAAATGTGGAAACAACTCCACTTCCGGAAAGCATTACTGATGATCAAGGCACTTCTGCTCCTCCGAAAAAGATTGTTGACATAAACCAGCCCCAGACATGCAAGAATAAGGGGTGTGGTAAAACTTTCAAAGAGAAGGATAACCACGAGAGTGCGTGCAGTTACCATCCCGGGCCTGCTATTTTCCACGACAGAGTGAGAGGGTGGAAGTGCTGTGACGTTCACGTAAAGGAATTTGATGAGTTTATGAGCATTCCTCCATGCACCAAAGGTTGGCACAATGCTGATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0002679 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009814 GO:0009816 GO:0009817 GO:0009987 GO:0012501 GO:0017016 GO:0017048 GO:0019899 GO:0031072 GO:0031267 GO:0031647 GO:0033554 GO:0034050 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0045730 GO:0046872 GO:0046914 GO:0050821 GO:0050832 GO:0050896 GO:0051020 GO:0051704 GO:0051707 GO:0051716 GO:0051879 GO:0065007 GO:0065008 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

CHORD

Protein Analysis

289

Amino Acids

32.03

Weight (kDa)

7.49

Isoelectric Point (pI)

57.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51700 AT5G51700
fragaria_vesca	FvH4_7g28300 FvH4_7g28300
malus_domestica	MD01G1187300.v1.1 MD07G1259600.v1.1
prunus_persica	Prupe.2G283700_v2.0.a1
pyrus_communis	pycom07g23300
rosa_chinensis	RchiOBHm_Chr1g0375271
rosa_laevigata	RLG00000026672
rosa_multiflora	Rmu_sc0000554.1_g000035
rosa_roxburghii	Rroxscaffold_4G00282880
rosa_samantha	Rh1AG400400 Rh1BG364000
rosa_wichuraiana	Rw1G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	57
AccB7I	CCANNNNNTGG	1 cut(s)	846
AccIII	TCCGGA	1 cut(s)	598
AciI	CCGC	1 cut(s)	211
AclWI	GGATC	2 cut(s)	440, 453
AcsI	RAATTY	1 cut(s)	806
AcuI	CTGAAG	1 cut(s)	297
AcyI	GRCGYC	1 cut(s)	125
AfaI	GTAC	2 cut(s)	24, 41
AfiI	CCNNNNNNNGG	3 cut(s)	121, 507, 846
AgsI	TTSAA	1 cut(s)	703
AjnI	CCWGG	2 cut(s)	382, 516
AjuI	GAANNNNNNNTTGG	2 cut(s)	407, 439
AleI	CACNNNNGTG	1 cut(s)	723
AluBI	AGCT	2 cut(s)	218, 470
AluI	AGCT	2 cut(s)	218, 470
Alw21I	GWGCWC	1 cut(s)	547
Alw26I	GTCTC	1 cut(s)	177
Alw44I	GTGCAC	1 cut(s)	543
AlwI	GGATC	2 cut(s)	440, 453
AlwNI	CAGNNNCTG	1 cut(s)	473
Ama87I	CYCGRG	1 cut(s)	743
Aor13HI	TCCGGA	1 cut(s)	598
AoxI	GGCC	1 cut(s)	746
ApaLI	GTGCAC	1 cut(s)	543
ApeKI	GCWGC	2 cut(s)	215, 243
ApoI	RAATTY	1 cut(s)	806
AspS9I	GGNCC	2 cut(s)	91, 746
AsuC2I	CCSGG	3 cut(s)	89, 744, 745
AsuHPI	GGTGA	1 cut(s)	355
AvaI	CYCGRG	1 cut(s)	743
AvaII	GGWCC	1 cut(s)	91
AxyI	CCTNAGG	1 cut(s)	441
BaeGI	GKGCMC	1 cut(s)	547
BamHI	GGATCC	1 cut(s)	445
BauI	CACGAG	1 cut(s)	719
BbsI	GAAGAC	2 cut(s)	71, 123
Bbv12I	GWGCWC	1 cut(s)	547
BbvI	GCAGC	2 cut(s)	227, 230
BccI	CCATC	3 cut(s)	193, 311, 747
BcgI	CGANNNNNNTGC	4 cut(s)	225, 259, 524, 558
BciT130I	CCWGG	2 cut(s)	384, 518
BclI	TGATCA	1 cut(s)	616
BcnI	CCSGG	3 cut(s)	89, 744, 745
BcoDI	GTCTC	1 cut(s)	177
BfaI	CTAG	1 cut(s)	507
BfmI	CTRYAG	1 cut(s)	465
BisI	GCNGC	2 cut(s)	216, 244
BlsI	GCNGC	2 cut(s)	217, 245
Bme1390I	CCNGG	5 cut(s)	89, 384, 518, 744, 745
Bme18I	GGWCC	1 cut(s)	91
BmeT110I	CYCGRG	1 cut(s)	743
BmgT120I	GGNCC	2 cut(s)	91, 746
BmiI	GGNNCC	2 cut(s)	283, 447
BmrFI	CCNGG	5 cut(s)	89, 384, 518, 744, 745
BmsI	GCATC	2 cut(s)	472, 494
BpiI	GAAGAC	2 cut(s)	71, 123
BplI	GAGNNNNNCTC	4 cut(s)	488, 520, 814, 846
BpuMI	CCSGG	3 cut(s)	89, 744, 745
BsaAI	YACGTR	1 cut(s)	799
BsaHI	GRCGYC	1 cut(s)	125
BsaI	GGTCTC	1 cut(s)	177
BsaJI	CCNNGG	4 cut(s)	87, 261, 517, 743
BsaWI	WCCGGW	1 cut(s)	598
BsaXI	ACNNNNNCTCC	4 cut(s)	454, 484, 616, 646
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 507, 846
Bse1I	ACTGG	2 cut(s)	57, 419
Bse21I	CCTNAGG	1 cut(s)	441
Bse3DI	GCAATG	1 cut(s)	233
BseAI	TCCGGA	1 cut(s)	598
BseBI	CCWGG	2 cut(s)	384, 518
BseDI	CCNNGG	4 cut(s)	87, 261, 517, 743
BseGI	GGATG	3 cut(s)	204, 392, 739
BseLI	CCNNNNNNNGG	3 cut(s)	121, 507, 846
BseMI	GCAATG	1 cut(s)	233
BseMII	CTCAG	1 cut(s)	183
BseNI	ACTGG	2 cut(s)	57, 419
BseRI	GAGGAG	3 cut(s)	92, 108, 624
BseSI	GKGCMC	1 cut(s)	547
BseXI	GCAGC	2 cut(s)	227, 230
BsgI	GTGCAG	1 cut(s)	751
BshFI	GGCC	1 cut(s)	748
BsiHKAI	GWGCWC	1 cut(s)	547
BsiHKCI	CYCGRG	1 cut(s)	743
BsiSI	CCGG	4 cut(s)	89, 122, 599, 744
BslI	CCNNNNNNNGG	3 cut(s)	121, 507, 846
BsmAI	GTCTC	1 cut(s)	177
BsmI	GAATGC	1 cut(s)	825
BsnI	GGCC	1 cut(s)	748
Bso31I	GGTCTC	1 cut(s)	177
BsoBI	CYCGRG	1 cut(s)	743
Bsp1286I	GDGCHC	1 cut(s)	547
Bsp13I	TCCGGA	1 cut(s)	598
Bsp143I	GATC	3 cut(s)	445, 535, 616
BspACI	CCGC	1 cut(s)	211
BspANI	GGCC	1 cut(s)	748
BspCNI	CTCAG	1 cut(s)	182
BspEI	TCCGGA	1 cut(s)	598
BspHI	TCATGA	2 cut(s)	313, 355
BspLI	GGNNCC	2 cut(s)	283, 447
BspPI	GGATC	2 cut(s)	440, 453
BspTNI	GGTCTC	1 cut(s)	177
BsrDI	GCAATG	1 cut(s)	233
BsrI	ACTGG	2 cut(s)	57, 419
BssECI	CCNNGG	4 cut(s)	87, 261, 517, 743
BssMI	GATC	3 cut(s)	445, 535, 616
BssNI	GRCGYC	1 cut(s)	125
BssSI	CACGAG	1 cut(s)	719
Bst2BI	CACGAG	1 cut(s)	719
Bst2UI	CCWGG	2 cut(s)	384, 518
BstACI	GRCGYC	1 cut(s)	125
BstBAI	YACGTR	1 cut(s)	799
BstC8I	GCNNGC	5 cut(s)	213, 233, 344, 730, 750
BstDEI	CTNAG	2 cut(s)	169, 441
BstENI	CCTNNNNNAGG	1 cut(s)	505
BstF5I	GGATG	3 cut(s)	204, 392, 739
BstKTI	GATC	3 cut(s)	448, 538, 619
BstMAI	GTCTC	1 cut(s)	177
BstMBI	GATC	3 cut(s)	445, 535, 616
BstMWI	GCNNNNNNNGC	2 cut(s)	232, 482
BstNI	CCWGG	2 cut(s)	384, 518
BstNSI	RCATGY	1 cut(s)	675
BstSCI	CCNGG	5 cut(s)	87, 382, 516, 742, 743
BstSFI	CTRYAG	1 cut(s)	465
BstSLI	GKGCMC	1 cut(s)	547
BstV1I	GCAGC	2 cut(s)	227, 230
BstV2I	GAAGAC	2 cut(s)	71, 123
BstX2I	RGATCY	1 cut(s)	445
BstXI	CCANNNNNNTGG	1 cut(s)	239
BstYI	RGATCY	1 cut(s)	445
Bsu36I	CCTNAGG	1 cut(s)	441
BsuRI	GGCC	1 cut(s)	748
BtsCI	GGATG	3 cut(s)	204, 392, 739
BtsIMutI	CAGTG	1 cut(s)	426
Cac8I	GCNNGC	5 cut(s)	213, 233, 344, 730, 750
CaiI	CAGNNNCTG	1 cut(s)	473
CciI	TCATGA	2 cut(s)	313, 355
Cfr13I	GGNCC	2 cut(s)	91, 746
Cfr9I	CCCGGG	1 cut(s)	743
CseI	GACGC	1 cut(s)	114
Csp6I	GTAC	2 cut(s)	23, 40
CviAII	CATG	7 cut(s)	253, 296, 314, 356, 539, 672, 834
CviQI	GTAC	2 cut(s)	23, 40
DdeI	CTNAG	2 cut(s)	169, 441
DpnI	GATC	3 cut(s)	447, 537, 618
DpnII	GATC	3 cut(s)	445, 535, 616
DrdI	GACNNNNNNGTC	1 cut(s)	57
DseDI	GACNNNNNNGTC	1 cut(s)	57
Eco31I	GGTCTC	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	297
Eco81I	CCTNAGG	1 cut(s)	441
Eco88I	CYCGRG	1 cut(s)	743
EcoNI	CCTNNNNNAGG	1 cut(s)	505
EcoRII	CCWGG	2 cut(s)	382, 516
EcoT22I	ATGCAT	1 cut(s)	487
FaeI	CATG	7 cut(s)	256, 299, 317, 359, 542, 675, 837
FatI	CATG	7 cut(s)	252, 295, 313, 355, 538, 671, 833
FauI	CCCGC	1 cut(s)	204
FbaI	TGATCA	1 cut(s)	616
Fnu4HI	GCNGC	2 cut(s)	216, 244
FokI	GGATG	3 cut(s)	211, 399, 726
Fsp4HI	GCNGC	2 cut(s)	216, 244
FspBI	CTAG	1 cut(s)	507
GluI	GCNGC	2 cut(s)	216, 244
HaeIII	GGCC	1 cut(s)	748
HapII	CCGG	4 cut(s)	89, 122, 599, 744
HgaI	GACGC	1 cut(s)	114
Hin1I	GRCGYC	1 cut(s)	125
Hin1II	CATG	7 cut(s)	256, 299, 317, 359, 542, 675, 837
HincII	GTYRAC	1 cut(s)	652
HindII	GTYRAC	1 cut(s)	652
HinfI	GANTC	3 cut(s)	27, 299, 497
HpaII	CCGG	4 cut(s)	89, 122, 599, 744
HphI	GGTGA	1 cut(s)	355
Hpy166II	GTNNAC	4 cut(s)	401, 545, 652, 796
Hpy188I	TCNGA	3 cut(s)	262, 535, 639
Hpy188III	TCNNGA	4 cut(s)	275, 314, 356, 599
Hpy8I	GTNNAC	4 cut(s)	401, 545, 652, 796
Hpy99I	CGWCG	3 cut(s)	111, 130, 192
HpyAV	CCTTC	3 cut(s)	156, 272, 703
HpyCH4IV	ACGT	2 cut(s)	792, 798
HpyCH4V	TGCA	8 cut(s)	226, 246, 342, 485, 545, 675, 732, 837
HpyF10VI	GCNNNNNNNGC	2 cut(s)	232, 482
HpyF3I	CTNAG	2 cut(s)	169, 441
HpySE526I	ACGT	2 cut(s)	792, 798
Hsp92I	GRCGYC	1 cut(s)	125
Hsp92II	CATG	7 cut(s)	256, 299, 317, 359, 542, 675, 837
Kpn2I	TCCGGA	1 cut(s)	598
Ksp22I	TGATCA	1 cut(s)	616
Kzo9I	GATC	3 cut(s)	445, 535, 616
LmnI	GCTCC	4 cut(s)	287, 463, 475, 637
Lsp1109I	GCAGC	2 cut(s)	227, 230
LweI	GCATC	2 cut(s)	472, 494
MaeI	CTAG	1 cut(s)	507
MaeII	ACGT	2 cut(s)	792, 798
MaeIII	GTNAC	2 cut(s)	734, 788
MalI	GATC	3 cut(s)	447, 537, 618
MboI	GATC	3 cut(s)	445, 535, 616
MboII	GAAGA	4 cut(s)	71, 123, 126, 517
MflI	RGATCY	1 cut(s)	445
MhlI	GDGCHC	1 cut(s)	547
MluCI	AATT	3 cut(s)	237, 377, 806
MlyI	GAGTC	1 cut(s)	506
MmeI	TCCRAC	1 cut(s)	28
Mph1103I	ATGCAT	1 cut(s)	487
MroI	TCCGGA	1 cut(s)	598
MseI	TTAA	1 cut(s)	324
MslI	CAYNNNNRTG	1 cut(s)	723
MspA1I	CMGCKG	1 cut(s)	211
MspI	CCGG	4 cut(s)	89, 122, 599, 744
MspR9I	CCNGG	5 cut(s)	89, 384, 518, 744, 745
Mva1269I	GAATGC	1 cut(s)	825
MvaI	CCWGG	2 cut(s)	384, 518
MwoI	GCNNNNNNNGC	2 cut(s)	232, 482
NciI	CCSGG	3 cut(s)	89, 744, 745
NdeII	GATC	3 cut(s)	445, 535, 616
NlaIII	CATG	7 cut(s)	256, 299, 317, 359, 542, 675, 837
NlaIV	GGNNCC	2 cut(s)	283, 447
NmuCI	GTSAC	1 cut(s)	788
NsiI	ATGCAT	1 cut(s)	487
NspI	RCATGY	1 cut(s)	675
OliI	CACNNNNGTG	1 cut(s)	723
PagI	TCATGA	2 cut(s)	313, 355
PctI	GAATGC	1 cut(s)	825
PfeI	GAWTC	2 cut(s)	27, 299
PflMI	CCANNNNNTGG	1 cut(s)	846
PkrI	GCNGC	2 cut(s)	217, 245
PleI	GAGTC	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	505
Ppu21I	YACGTR	1 cut(s)	799
Psp6I	CCWGG	2 cut(s)	382, 516
PspGI	CCWGG	2 cut(s)	382, 516
PspN4I	GGNNCC	2 cut(s)	283, 447
PspPI	GGNCC	2 cut(s)	91, 746
PstNI	CAGNNNCTG	1 cut(s)	473
PsuI	RGATCY	1 cut(s)	445
RsaI	GTAC	2 cut(s)	24, 41
RsaNI	GTAC	2 cut(s)	23, 40
RseI	CAYNNNNRTG	1 cut(s)	723
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	2 cut(s)	216, 244
Sau3AI	GATC	3 cut(s)	445, 535, 616
Sau96I	GGNCC	2 cut(s)	91, 746
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	5 cut(s)	89, 384, 518, 744, 745
SduI	GDGCHC	1 cut(s)	547
SetI	ASST	7 cut(s)	220, 368, 472, 512, 795, 801, 847
SfaNI	GCATC	2 cut(s)	472, 494
SfcI	CTRYAG	1 cut(s)	465
SinI	GGWCC	1 cut(s)	91
SmaI	CCCGGG	1 cut(s)	745
SmiMI	CAYNNNNRTG	1 cut(s)	723
Sse9I	AATT	3 cut(s)	237, 377, 806
SsiI	CCGC	1 cut(s)	211
SspMI	CTAG	1 cut(s)	507
StyD4I	CCNGG	5 cut(s)	87, 382, 516, 742, 743
TaiI	ACGT	2 cut(s)	795, 801
TaqII	GACCGA	1 cut(s)	201
TasI	AATT	3 cut(s)	237, 377, 806
TatI	WGTACW	1 cut(s)	39
TfiI	GAWTC	2 cut(s)	27, 299
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	1 cut(s)	426
TseFI	GTSAC	1 cut(s)	788
TseI	GCWGC	2 cut(s)	215, 243
Tsp45I	GTSAC	1 cut(s)	788
TspDTI	ATGAA	1 cut(s)	302
TspGWI	ACGGA	2 cut(s)	95, 195
TspMI	CCCGGG	1 cut(s)	743
TspRI	CASTG	1 cut(s)	426
Van91I	CCANNNNNTGG	1 cut(s)	846
VneI	GTGCAC	1 cut(s)	543
VpaK11BI	GGWCC	1 cut(s)	91
XagI	CCTNNNNNAGG	1 cut(s)	505
XapI	RAATTY	1 cut(s)	806
XceI	RCATGY	1 cut(s)	675
XmaI	CCCGGG	1 cut(s)	743
XspI	CTAG	1 cut(s)	507
Zsp2I	ATGCAT	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.