Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0016217

Physical Location & Seq

Genomic Coordinates Reverse (-)

28594562 .. 28597209

Gene Structure 2648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1187300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGAGGGTCAGCGGACAGCTCTGTTGAAATGCCAGCGAATTGGCTGCAACGCCATGTTTTCCGACGACGACAATCCCGAAGGTTCCTGTCAATACCACGATTCGGGACCTATATTTCATGATGGGATTAAAGAGTGGAGTTGTTGCAAGAAAAGAAGTCATGATTTCACCTTATTTTTAGAATTGCCAGGATGTAAGGCAGGTAAACACACAACAGAGAAACCAGTGTTGGCGAAGCCGAAGCCTAAGGCTCCTGTTCCTGCTCCTACTGCAGCTCCTGCTACTGATGCATCGTCAAAACAGTCCTGCTCTAGGTGTCGCCAGGGTTTTTTCTGTTCAGAACATGGTGCACAAGCCAAAGAACTAAAATCAAAGCCTGTAAATGTGGAAACAACTCCAATTCCAGAAAGCATTACTGACGATCAAGGCACTTCTGCTCCGCCGAAAAAGATTGTTGACATAAACCAGCCCCAGACGTGTATGAATAAGGGGTGTGATCAAACTTTCAAAGAGAAAGATAACCACGAGAATGCATGCAGTTACCATCCCGGGCCTGCTATTTTCCACGACAGAGTGAGAGGGTGGAAGTGCTGTGACGTTCACGTAAAGGAATTTGATGAGTTTATGAGCATTCCTCCATGCACCAAAGGTTGGCACAATGCTGACCCGGTATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0002679 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009814 GO:0009816 GO:0009817 GO:0009987 GO:0012501 GO:0017016 GO:0017048 GO:0019899 GO:0031072 GO:0031267 GO:0031647 GO:0033554 GO:0034050 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0045730 GO:0046872 GO:0046914 GO:0050821 GO:0050832 GO:0050896 GO:0051020 GO:0051704 GO:0051707 GO:0051716 GO:0051879 GO:0065007 GO:0065008 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

CHORD

Protein Analysis

226

Amino Acids

24.83

Weight (kDa)

7.09

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CHORD	PF04968	10 - 70	2.6e-23	CHORD
CHORD	PF04968	159 - 219	1.1e-23	CHORD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51700 AT5G51700
fragaria_vesca	FvH4_7g28300 FvH4_7g28300
malus_domestica	MD01G1187300.v1.1 MD07G1259600.v1.1
prunus_persica	Prupe.2G283700_v2.0.a1
pyrus_communis	pycom07g23300
rosa_chinensis	RchiOBHm_Chr1g0375271
rosa_laevigata	RLG00000026672
rosa_multiflora	Rmu_sc0000554.1_g000035
rosa_roxburghii	Rroxscaffold_4G00282880
rosa_samantha	Rh1AG400400 Rh1BG364000
rosa_wichuraiana	Rw1G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	191
AccB7I	CCANNNNNTGG	1 cut(s)	651
AciI	CCGC	2 cut(s)	13, 440
AcsI	RAATTY	1 cut(s)	611
AfiI	CCNNNNNNNGG	3 cut(s)	103, 312, 651
AflIII	ACRYGT	1 cut(s)	476
AgsI	TTSAA	2 cut(s)	28, 508
AjiI	CACGTC	1 cut(s)	477
AjnI	CCWGG	2 cut(s)	187, 321
AjuI	GAANNNNNNNTTGG	2 cut(s)	212, 244
AluBI	AGCT	2 cut(s)	20, 275
AluI	AGCT	2 cut(s)	20, 275
Alw21I	GWGCWC	1 cut(s)	352
Alw44I	GTGCAC	1 cut(s)	348
AlwNI	CAGNNNCTG	1 cut(s)	278
Ama87I	CYCGRG	1 cut(s)	548
AoxI	GGCC	1 cut(s)	551
ApaLI	GTGCAC	1 cut(s)	348
ApeKI	GCWGC	2 cut(s)	45, 272
ApoI	RAATTY	1 cut(s)	611
AspS9I	GGNCC	2 cut(s)	107, 551
AsuC2I	CCSGG	3 cut(s)	549, 550, 668
AsuHPI	GGTGA	1 cut(s)	160
AvaI	CYCGRG	1 cut(s)	548
AvaII	GGWCC	1 cut(s)	107
AxyI	CCTNAGG	1 cut(s)	246
BaeGI	GKGCMC	1 cut(s)	352
BauI	CACGAG	1 cut(s)	524
Bbv12I	GWGCWC	1 cut(s)	352
BbvI	GCAGC	2 cut(s)	32, 284
BccI	CCATC	2 cut(s)	116, 552
BcgI	CGANNNNNNTGC	2 cut(s)	27, 61
BciT130I	CCWGG	2 cut(s)	189, 323
BclI	TGATCA	1 cut(s)	496
BcnI	CCSGG	3 cut(s)	549, 550, 668
BfaI	CTAG	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	270
BfuAI	ACCTGC	1 cut(s)	191
BisI	GCNGC	2 cut(s)	46, 273
BlsI	GCNGC	2 cut(s)	47, 274
Bme1390I	CCNGG	5 cut(s)	189, 323, 549, 550, 668
Bme18I	GGWCC	1 cut(s)	107
BmeT110I	CYCGRG	1 cut(s)	548
BmgBI	CACGTC	1 cut(s)	477
BmgT120I	GGNCC	2 cut(s)	107, 551
BmiI	GGNNCC	3 cut(s)	85, 108, 252
BmrFI	CCNGG	5 cut(s)	189, 323, 549, 550, 668
BmsI	GCATC	2 cut(s)	277, 299
BplI	GAGNNNNNCTC	2 cut(s)	619, 651
BpuMI	CCSGG	3 cut(s)	549, 550, 668
BsaAI	YACGTR	1 cut(s)	604
BsaJI	CCNNGG	2 cut(s)	322, 548
BsaXI	ACNNNNNCTCC	4 cut(s)	259, 289, 421, 451
Bsc4I	CCNNNNNNNGG	3 cut(s)	103, 312, 651
Bse1I	ACTGG	1 cut(s)	224
Bse21I	CCTNAGG	1 cut(s)	246
BseBI	CCWGG	2 cut(s)	189, 323
BseDI	CCNNGG	2 cut(s)	322, 548
BseGI	GGATG	2 cut(s)	197, 544
BseLI	CCNNNNNNNGG	3 cut(s)	103, 312, 651
BseNI	ACTGG	1 cut(s)	224
BseSI	GKGCMC	1 cut(s)	352
BseXI	GCAGC	2 cut(s)	32, 284
BshFI	GGCC	1 cut(s)	553
BsiHKAI	GWGCWC	1 cut(s)	352
BsiHKCI	CYCGRG	1 cut(s)	548
BsiSI	CCGG	2 cut(s)	549, 668
BslFI	GGGAC	1 cut(s)	120
BslI	CCNNNNNNNGG	3 cut(s)	103, 312, 651
BsmFI	GGGAC	1 cut(s)	120
BsmI	GAATGC	2 cut(s)	535, 630
BsnI	GGCC	1 cut(s)	553
BsoBI	CYCGRG	1 cut(s)	548
Bsp1286I	GDGCHC	1 cut(s)	352
Bsp143I	GATC	2 cut(s)	421, 496
BspACI	CCGC	2 cut(s)	13, 440
BspANI	GGCC	1 cut(s)	553
BspHI	TCATGA	2 cut(s)	118, 160
BspLI	GGNNCC	3 cut(s)	85, 108, 252
BspMAI	CTGCAG	1 cut(s)	274
BspMI	ACCTGC	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	224
BssECI	CCNNGG	2 cut(s)	322, 548
BssMI	GATC	2 cut(s)	421, 496
BssSI	CACGAG	1 cut(s)	524
Bst2BI	CACGAG	1 cut(s)	524
Bst2UI	CCWGG	2 cut(s)	189, 323
Bst4CI	ACNGT	1 cut(s)	303
BstAPI	GCANNNNNTGC	1 cut(s)	278
BstBAI	YACGTR	1 cut(s)	604
BstC8I	GCNNGC	3 cut(s)	35, 535, 555
BstDEI	CTNAG	1 cut(s)	246
BstENI	CCTNNNNNAGG	1 cut(s)	310
BstF5I	GGATG	2 cut(s)	197, 544
BstKTI	GATC	2 cut(s)	424, 499
BstMBI	GATC	2 cut(s)	421, 496
BstMWI	GCNNNNNNNGC	3 cut(s)	269, 278, 287
BstNI	CCWGG	2 cut(s)	189, 323
BstNSI	RCATGY	1 cut(s)	537
BstSCI	CCNGG	5 cut(s)	187, 321, 547, 548, 666
BstSFI	CTRYAG	1 cut(s)	270
BstSLI	GKGCMC	1 cut(s)	352
BstV1I	GCAGC	2 cut(s)	32, 284
BstXI	CCANNNNNNTGG	1 cut(s)	41
Bsu36I	CCTNAGG	1 cut(s)	246
BsuRI	GGCC	1 cut(s)	553
BtrI	CACGTC	1 cut(s)	477
BtsCI	GGATG	2 cut(s)	197, 544
BtsIMutI	CAGTG	1 cut(s)	231
BveI	ACCTGC	1 cut(s)	191
Cac8I	GCNNGC	3 cut(s)	35, 535, 555
CaiI	CAGNNNCTG	1 cut(s)	278
CciI	TCATGA	2 cut(s)	118, 160
Cfr13I	GGNCC	2 cut(s)	107, 551
Cfr9I	CCCGGG	1 cut(s)	548
CviAII	CATG	6 cut(s)	55, 119, 161, 344, 534, 639
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	2 cut(s)	423, 498
DpnII	GATC	2 cut(s)	421, 496
EciI	GGCGGA	1 cut(s)	429
Eco47I	GGWCC	1 cut(s)	107
Eco81I	CCTNAGG	1 cut(s)	246
Eco88I	CYCGRG	1 cut(s)	548
EcoNI	CCTNNNNNAGG	1 cut(s)	310
EcoO109I	RGGNCCY	1 cut(s)	107
EcoRII	CCWGG	2 cut(s)	187, 321
EcoT22I	ATGCAT	2 cut(s)	292, 535
FaeI	CATG	6 cut(s)	58, 122, 164, 347, 537, 642
FaqI	GGGAC	1 cut(s)	120
FatI	CATG	6 cut(s)	54, 118, 160, 343, 533, 638
FbaI	TGATCA	1 cut(s)	496
Fnu4HI	GCNGC	2 cut(s)	46, 273
FokI	GGATG	2 cut(s)	204, 531
Fsp4HI	GCNGC	2 cut(s)	46, 273
FspBI	CTAG	1 cut(s)	312
GluI	GCNGC	2 cut(s)	46, 273
HaeIII	GGCC	1 cut(s)	553
HapII	CCGG	2 cut(s)	549, 668
Hin1II	CATG	6 cut(s)	58, 122, 164, 347, 537, 642
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HinfI	GANTC	1 cut(s)	101
HpaII	CCGG	2 cut(s)	549, 668
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	4 cut(s)	206, 350, 457, 601
Hpy188I	TCNGA	2 cut(s)	64, 340
Hpy188III	TCNNGA	5 cut(s)	77, 105, 119, 161, 404
Hpy8I	GTNNAC	4 cut(s)	206, 350, 457, 601
Hpy99I	CGWCG	2 cut(s)	68, 71
HpyAV	CCTTC	1 cut(s)	74
HpyCH4III	ACNGT	1 cut(s)	303
HpyCH4IV	ACGT	3 cut(s)	476, 597, 603
HpyCH4V	TGCA	8 cut(s)	48, 147, 272, 290, 350, 533, 537, 642
HpyF10VI	GCNNNNNNNGC	3 cut(s)	269, 278, 287
HpyF3I	CTNAG	1 cut(s)	246
HpySE526I	ACGT	3 cut(s)	476, 597, 603
Hsp92II	CATG	6 cut(s)	58, 122, 164, 347, 537, 642
Ksp22I	TGATCA	1 cut(s)	496
Kzo9I	GATC	2 cut(s)	421, 496
LmnI	GCTCC	4 cut(s)	256, 268, 280, 442
Lsp1109I	GCAGC	2 cut(s)	32, 284
LweI	GCATC	2 cut(s)	277, 299
MaeI	CTAG	1 cut(s)	312
MaeII	ACGT	3 cut(s)	476, 597, 603
MaeIII	GTNAC	2 cut(s)	539, 593
MalI	GATC	2 cut(s)	423, 498
MboI	GATC	2 cut(s)	421, 496
MhlI	GDGCHC	1 cut(s)	352
MluCI	AATT	4 cut(s)	39, 182, 399, 611
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	2 cut(s)	572, 645
Mph1103I	ATGCAT	2 cut(s)	292, 535
MseI	TTAA	2 cut(s)	129, 676
MslI	CAYNNNNRTG	1 cut(s)	528
MspA1I	CMGCKG	1 cut(s)	13
MspI	CCGG	2 cut(s)	549, 668
MspR9I	CCNGG	5 cut(s)	189, 323, 549, 550, 668
Mva1269I	GAATGC	2 cut(s)	535, 630
MvaI	CCWGG	2 cut(s)	189, 323
MwoI	GCNNNNNNNGC	3 cut(s)	269, 278, 287
NciI	CCSGG	3 cut(s)	549, 550, 668
NdeII	GATC	2 cut(s)	421, 496
NlaIII	CATG	6 cut(s)	58, 122, 164, 347, 537, 642
NlaIV	GGNNCC	3 cut(s)	85, 108, 252
NmuCI	GTSAC	1 cut(s)	593
NsiI	ATGCAT	2 cut(s)	292, 535
NspI	RCATGY	1 cut(s)	537
PaeI	GCATGC	1 cut(s)	537
PagI	TCATGA	2 cut(s)	118, 160
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PctI	GAATGC	2 cut(s)	535, 630
PfeI	GAWTC	1 cut(s)	101
PflMI	CCANNNNNTGG	1 cut(s)	651
PkrI	GCNGC	2 cut(s)	47, 274
Ppu21I	YACGTR	1 cut(s)	604
PpuMI	RGGWCCY	1 cut(s)	107
Psp5II	RGGWCCY	1 cut(s)	107
Psp6I	CCWGG	2 cut(s)	187, 321
PspGI	CCWGG	2 cut(s)	187, 321
PspN4I	GGNNCC	3 cut(s)	85, 108, 252
PspPI	GGNCC	2 cut(s)	107, 551
PspPPI	RGGWCCY	1 cut(s)	107
PstI	CTGCAG	1 cut(s)	274
PstNI	CAGNNNCTG	1 cut(s)	278
RseI	CAYNNNNRTG	1 cut(s)	528
SaqAI	TTAA	2 cut(s)	129, 676
SatI	GCNGC	2 cut(s)	46, 273
Sau3AI	GATC	2 cut(s)	421, 496
Sau96I	GGNCC	2 cut(s)	107, 551
ScrFI	CCNGG	5 cut(s)	189, 323, 549, 550, 668
SduI	GDGCHC	1 cut(s)	352
SfaNI	GCATC	2 cut(s)	277, 299
SfcI	CTRYAG	1 cut(s)	270
SinI	GGWCC	1 cut(s)	107
SmaI	CCCGGG	1 cut(s)	550
SmiMI	CAYNNNNRTG	1 cut(s)	528
SphI	GCATGC	1 cut(s)	537
Sse9I	AATT	4 cut(s)	39, 182, 399, 611
SsiI	CCGC	2 cut(s)	13, 440
SspMI	CTAG	1 cut(s)	312
StyD4I	CCNGG	5 cut(s)	187, 321, 547, 548, 666
TaaI	ACNGT	1 cut(s)	303
TaiI	ACGT	3 cut(s)	479, 600, 606
TasI	AATT	4 cut(s)	39, 182, 399, 611
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	2 cut(s)	129, 676
Tru9I	TTAA	2 cut(s)	129, 676
TscAI	CASTG	1 cut(s)	231
TseFI	GTSAC	1 cut(s)	593
TseI	GCWGC	2 cut(s)	45, 272
Tsp45I	GTSAC	1 cut(s)	593
TspDTI	ATGAA	2 cut(s)	107, 497
TspMI	CCCGGG	1 cut(s)	548
TspRI	CASTG	1 cut(s)	231
Van91I	CCANNNNNTGG	1 cut(s)	651
VneI	GTGCAC	1 cut(s)	348
VpaK11BI	GGWCC	1 cut(s)	107
XagI	CCTNNNNNAGG	1 cut(s)	310
XapI	RAATTY	1 cut(s)	611
XceI	RCATGY	1 cut(s)	537
XmaI	CCCGGG	1 cut(s)	548
XspI	CTAG	1 cut(s)	312
Zsp2I	ATGCAT	2 cut(s)	292, 535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.