AT5G52030

TraB family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011453
Physical Location & Seq
Forward (+)
21128085 .. 21130244
2160 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G52030.1

Sequence Viewer

Length: 777 bp
ATGTACACTTCAAGTGTTGGAGGAGAGGTTGACCAAAACTTAAAATCCGGAGAGTTGTCGTTGACCGGGACTGGCTTTCTCGGTGCTGTTGGCCGGAGTTTAGACTTGGGAGGGCAAACTGCGTTGGCATTGCGACTTCTATTGGCGGTTTTCTCTTCTAAGTTATCTTCTGTTGCTGACCGCCCTTTCGGGGATGAGTTTCGTGCTGCTCGGAAAGCATCTGAGGAAGTTGGTGCGCAGCTGGTTCTTGGAGATCGACCCATCGAAATAACTCTCCAAAGGGCTTGGAACTCTTTGAAATGGGGAGAGAAGTTTAATCTGGTGATGGCTGTGACTCGGGTAATCACATCGTCATCGGGTATATCCGCAGCGGAGCTTAAGGAACAAGAGACCGATGAAAACAGTGGAAGTTTGCAGCTTTACGAACGGCTAAGTTTCTCATACCCGGCACTCCTAATGCCTCTTATACACGAAAGAGATACCTATCTTGCTTGGTCATTGAAGAGAAGTAAGGCAGTGAATGGGTGTAAAACAGTGGTGGGAGTGATCGGGAAAGGACACATGAATGGTGTCATCTACGCGTTGGTGTCAGACTCTGGGGATCTCCGGTTTAGAGATTTGGTGGGAAGAGGAGATTCATATAATGGTGGTACTGGTACTACATCGAACGGTTGGATTCAAAAGGTTTTAAAGAGCTTCGTAAGAGACACAATTATAGGGTTCTTGCTATGGGAGTTATATGAACAGTATCTGATGATGAATCAAAACCTTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TraB

Protein Analysis

258

Amino Acids

28.17

Weight (kDa)

6.76

Isoelectric Point (pI)

25.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TraB_PrgY_gumN PF01963 61 - 190 3.9e-09 TraB/PrgY/gumN family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011453)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52030 AT5G52030
fragaria_vesca FvH4_7g28970 FvH4_7g28970
malus_domestica MD01G1196400.v1.1
prunus_persica Prupe.2G289700_v2.0.a1 Prupe.2G289700_v2.0.a1 Prupe.2G289700_v2.0.a1
pyrus_communis pycom01g20690
rosa_chinensis RchiOBHm_Chr1g0376671
rosa_laevigata RLG00000026582
rosa_multiflora Rmu_sc0009691.1_g000004
rosa_roxburghii Rroxscaffold_4G00281900
rosa_rugosa Rorug01G0397200 Rorug01G0397300
rosa_samantha Rh1AG414300 Rh1BG373600 Rh1CG387500 Rh1DG404500
rosa_wichuraiana Rw1G036330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 237
AccII CGCG 1 cut(s) 581
AccIII TCCGGA 1 cut(s) 47
AciI CCGC 4 cut(s) 146, 181, 366, 371
AclWI GGATC 1 cut(s) 609
AcoI YGGCCR 1 cut(s) 91
AfaI GTAC 3 cut(s) 5, 652, 658
AfiI CCNNNNNNNGG 1 cut(s) 190
AflII CTTAAG 1 cut(s) 377
AflIII ACRYGT 1 cut(s) 579
AgsI TTSAA 4 cut(s) 12, 298, 502, 680
AluBI AGCT 4 cut(s) 241, 376, 418, 696
AluI AGCT 4 cut(s) 241, 376, 418, 696
Alw26I GTCTC 2 cut(s) 383, 699
AlwI GGATC 1 cut(s) 609
AlwNI CAGNNNCTG 2 cut(s) 596, 751
Ama87I CYCGRG 1 cut(s) 336
Aor13HI TCCGGA 1 cut(s) 47
AoxI GGCC 1 cut(s) 91
ApeKI GCWGC 4 cut(s) 206, 238, 368, 415
ArsI GACNNNNNNTTYG 2 cut(s) 170, 202
AspLEI GCGC 1 cut(s) 238
AsuC2I CCSGG 2 cut(s) 67, 446
AsuHPI GGTGA 1 cut(s) 334
AvaI CYCGRG 1 cut(s) 336
BbvI GCAGC 4 cut(s) 193, 250, 380, 427
BccI CCATC 2 cut(s) 269, 319
BceAI ACGGC 1 cut(s) 443
BcnI CCSGG 2 cut(s) 67, 446
BcoDI GTCTC 2 cut(s) 383, 699
BfrI CTTAAG 1 cut(s) 377
BisI GCNGC 4 cut(s) 207, 239, 369, 416
BlsI GCNGC 4 cut(s) 208, 240, 370, 417
Bme1390I CCNGG 2 cut(s) 67, 446
BmeT110I CYCGRG 1 cut(s) 336
BmrFI CCNGG 2 cut(s) 67, 446
BmsI GCATC 1 cut(s) 227
BpuMI CCSGG 2 cut(s) 67, 446
BsaBI GATNNNNATC 1 cut(s) 483
BsaI GGTCTC 1 cut(s) 383
BsaWI WCCGGW 2 cut(s) 47, 606
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bsc4I CCNNNNNNNGG 1 cut(s) 190
Bse1I ACTGG 2 cut(s) 76, 658
Bse3DI GCAATG 1 cut(s) 128
Bse8I GATNNNNATC 1 cut(s) 483
BseAI TCCGGA 1 cut(s) 47
BseGI GGATG 1 cut(s) 199
BseJI GATNNNNATC 1 cut(s) 483
BseLI CCNNNNNNNGG 1 cut(s) 190
BseMI GCAATG 1 cut(s) 128
BseMII CTCAG 1 cut(s) 213
BseNI ACTGG 2 cut(s) 76, 658
BseRI GAGGAG 2 cut(s) 36, 645
BseXI GCAGC 4 cut(s) 193, 250, 380, 427
Bsh1236I CGCG 1 cut(s) 581
BshFI GGCC 1 cut(s) 93
BsiHKCI CYCGRG 1 cut(s) 336
BsiSI CCGG 5 cut(s) 48, 66, 94, 446, 607
BslFI GGGAC 1 cut(s) 82
BslI CCNNNNNNNGG 1 cut(s) 190
BsmAI GTCTC 2 cut(s) 383, 699
BsmFI GGGAC 1 cut(s) 82
BsnI GGCC 1 cut(s) 93
Bso31I GGTCTC 1 cut(s) 383
BsoBI CYCGRG 1 cut(s) 336
Bsp13I TCCGGA 1 cut(s) 47
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 3 cut(s) 253, 546, 601
BspACI CCGC 4 cut(s) 146, 181, 366, 371
BspANI GGCC 1 cut(s) 93
BspCNI CTCAG 1 cut(s) 214
BspEI TCCGGA 1 cut(s) 47
BspFNI CGCG 1 cut(s) 581
BspHI TCATGA 1 cut(s) 773
BspPI GGATC 1 cut(s) 609
BspTI CTTAAG 1 cut(s) 377
BspTNI GGTCTC 1 cut(s) 383
BsrDI GCAATG 1 cut(s) 128
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 2 cut(s) 76, 658
BssMI GATC 3 cut(s) 253, 546, 601
Bst4CI ACNGT 4 cut(s) 404, 535, 671, 747
Bst6I CTCTTC 3 cut(s) 160, 497, 622
BstAFI CTTAAG 1 cut(s) 377
BstAUI TGTACA 1 cut(s) 3
BstDEI CTNAG 3 cut(s) 159, 222, 431
BstF5I GGATG 1 cut(s) 199
BstFNI CGCG 1 cut(s) 581
BstHHI GCGC 1 cut(s) 238
BstKTI GATC 3 cut(s) 256, 549, 604
BstMAI GTCTC 2 cut(s) 383, 699
BstMBI GATC 3 cut(s) 253, 546, 601
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstSCI CCNGG 2 cut(s) 65, 444
BstUI CGCG 1 cut(s) 581
BstV1I GCAGC 4 cut(s) 193, 250, 380, 427
BstX2I RGATCY 1 cut(s) 601
BstYI RGATCY 1 cut(s) 601
BsuRI GGCC 1 cut(s) 93
BtsCI GGATG 1 cut(s) 199
BtsI GCAGTG 1 cut(s) 522
BtsIMutI CAGTG 3 cut(s) 409, 522, 540
CaiI CAGNNNCTG 2 cut(s) 596, 751
CciI TCATGA 1 cut(s) 773
CfoI GCGC 1 cut(s) 238
Csp6I GTAC 3 cut(s) 4, 651, 657
CviAII CATG 2 cut(s) 562, 774
CviJI RGCY 9 cut(s) 75, 93, 241, 284, 329, 376, 418, 430, 696
CviKI_1 RGCY 9 cut(s) 75, 93, 241, 284, 329, 376, 418, 430, 696
CviQI GTAC 3 cut(s) 4, 651, 657
DdeI CTNAG 3 cut(s) 159, 222, 431
DpnI GATC 3 cut(s) 255, 548, 603
DpnII GATC 3 cut(s) 253, 546, 601
DraI TTTAAA 1 cut(s) 690
EaeI YGGCCR 1 cut(s) 91
Eam1104I CTCTTC 3 cut(s) 160, 497, 622
EarI CTCTTC 3 cut(s) 160, 497, 622
Eco31I GGTCTC 1 cut(s) 383
Eco88I CYCGRG 1 cut(s) 336
FaeI CATG 2 cut(s) 565, 777
FaqI GGGAC 1 cut(s) 82
FatI CATG 2 cut(s) 561, 773
Fnu4HI GCNGC 4 cut(s) 207, 239, 369, 416
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 4 cut(s) 207, 239, 369, 416
FspI TGCGCA 1 cut(s) 237
GlaI GCGC 1 cut(s) 237
GluI GCNGC 4 cut(s) 207, 239, 369, 416
HaeIII GGCC 1 cut(s) 93
HapII CCGG 5 cut(s) 48, 66, 94, 446, 607
HhaI GCGC 1 cut(s) 238
Hin1II CATG 2 cut(s) 565, 777
Hin6I GCGC 1 cut(s) 236
HinP1I GCGC 1 cut(s) 236
HincII GTYRAC 2 cut(s) 31, 63
HindII GTYRAC 2 cut(s) 31, 63
HinfI GANTC 5 cut(s) 334, 593, 635, 676, 760
HpaII CCGG 5 cut(s) 48, 66, 94, 446, 607
HphI GGTGA 1 cut(s) 334
Hpy166II GTNNAC 3 cut(s) 6, 31, 63
Hpy188I TCNGA 4 cut(s) 213, 223, 592, 753
Hpy188III TCNNGA 3 cut(s) 48, 550, 774
Hpy8I GTNNAC 3 cut(s) 6, 31, 63
HpyCH4III ACNGT 4 cut(s) 404, 535, 671, 747
HpyCH4V TGCA 1 cut(s) 415
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpyF3I CTNAG 3 cut(s) 159, 222, 431
Hsp92II CATG 2 cut(s) 565, 777
HspAI GCGC 1 cut(s) 236
Kpn2I TCCGGA 1 cut(s) 47
Kzo9I GATC 3 cut(s) 253, 546, 601
LmnI GCTCC 1 cut(s) 373
Lsp1109I GCAGC 4 cut(s) 193, 250, 380, 427
LweI GCATC 1 cut(s) 227
MaeIII GTNAC 1 cut(s) 331
MalI GATC 3 cut(s) 255, 548, 603
MboI GATC 3 cut(s) 253, 546, 601
MboII GAAGA 4 cut(s) 147, 159, 514, 639
MflI RGATCY 1 cut(s) 601
MluCI AATT 1 cut(s) 711
MluI ACGCGT 1 cut(s) 579
MlyI GAGTC 2 cut(s) 328, 587
MmeI TCCRAC 1 cut(s) 653
MnlI CCTC 6 cut(s) 14, 19, 104, 217, 471, 623
MroI TCCGGA 1 cut(s) 47
MseI TTAA 4 cut(s) 41, 315, 378, 689
MslI CAYNNNNRTG 1 cut(s) 564
MspA1I CMGCKG 2 cut(s) 241, 371
MspCI CTTAAG 1 cut(s) 377
MspI CCGG 5 cut(s) 48, 66, 94, 446, 607
MspR9I CCNGG 2 cut(s) 67, 446
MvnI CGCG 1 cut(s) 581
MwoI GCNNNNNNNGC 1 cut(s) 215
NciI CCSGG 2 cut(s) 67, 446
NdeII GATC 3 cut(s) 253, 546, 601
NlaIII CATG 2 cut(s) 565, 777
NmuCI GTSAC 1 cut(s) 331
NsbI TGCGCA 1 cut(s) 237
PagI TCATGA 1 cut(s) 773
PfeI GAWTC 3 cut(s) 635, 676, 760
PkrI GCNGC 4 cut(s) 208, 240, 370, 417
PleI GAGTC 2 cut(s) 328, 587
PpsI GAGTC 2 cut(s) 328, 587
PstNI CAGNNNCTG 2 cut(s) 596, 751
PsuI RGATCY 1 cut(s) 601
PvuII CAGCTG 1 cut(s) 241
RsaI GTAC 3 cut(s) 5, 652, 658
RsaNI GTAC 3 cut(s) 4, 651, 657
RseI CAYNNNNRTG 1 cut(s) 564
SaqAI TTAA 4 cut(s) 41, 315, 378, 689
SatI GCNGC 4 cut(s) 207, 239, 369, 416
Sau3AI GATC 3 cut(s) 253, 546, 601
SchI GAGTC 2 cut(s) 328, 587
ScrFI CCNGG 2 cut(s) 67, 446
SetI ASST 8 cut(s) 30, 243, 378, 420, 485, 687, 698, 771
SfaNI GCATC 1 cut(s) 227
SmiMI CAYNNNNRTG 1 cut(s) 564
SmlI CTYRAG 1 cut(s) 377
SmoI CTYRAG 1 cut(s) 377
Sse9I AATT 1 cut(s) 711
SsiI CCGC 4 cut(s) 146, 181, 366, 371
StyD4I CCNGG 2 cut(s) 65, 444
TaaI ACNGT 4 cut(s) 404, 535, 671, 747
TaqI TCGA 3 cut(s) 256, 264, 665
TaqII GACCGA 1 cut(s) 407
TasI AATT 1 cut(s) 711
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 3 cut(s) 635, 676, 760
Tru1I TTAA 4 cut(s) 41, 315, 378, 689
Tru9I TTAA 4 cut(s) 41, 315, 378, 689
TscAI CASTG 3 cut(s) 409, 522, 540
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 4 cut(s) 206, 238, 368, 415
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 6 cut(s) 411, 578, 627, 756, 762, 773
TspRI CASTG 3 cut(s) 409, 522, 540
Vha464I CTTAAG 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.