MD01G1196400.v1.1

TraB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0011453
Physical Location & Seq
Forward (+)
29444137 .. 29446729
2593 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1196400.v1.1.491

Sequence Viewer

Length: 1182 bp
ATGGAGACCATTCAATCATCAAGCTTCCCAATTTTCCGCACCAACCCAGTTTTCCTCACCCCCAAGCCTCTCAGACCCTCAAAGGTTTCCATCAAACCTCCACCGCCGGACTTTGATTTCAGGTCAGAAATTTCGGTGGACTCAAGAGCCACAATAGCCAGAACGCACCCTGAACTGCTTGATTTGGCTGAGAATGGGAGCTTGTTCTTGATCGAGAAGAGCCGGTTCGGTCCCGTCCCGGCATGGAGGGCAGAGTTCGTCGAGCCGGAGGCCATCTGGTTGGTCGGAACCAATCATATTTCTCAAGACTCTGCGGTGGAGGTCGAACGCGTGGTCCGGGCAGTGAAGCCGGATAATGTGGTGGTGGAGCTATGTAGAAGCAGAGCTGGGATTATGTATGCTGATGCCTCCATGCATGGTGAGGCAGGAGGCCAACAATTAAGGTCTAATATGTTCTCTCTGAGTGGAACTGGGTTTTTCGGGGCCGTAGGTCGAAGCATAAACTTGGGGGGTCAAACTGCTCTAGCGTTACGAGTACTGTTGGCTGTTTTCTCATCAAAGATTTCATCCGACACCAATCGTCCTTTCGGTGATGAGTTTCGATCTGCTCGAAAAGCCTCTGAAGAAGTTGGTGCTCAAATTGTGTTGGGGGATCGTCCAATTGAAATTACCCTTGAAAGAGCTTGGAATTCTCTGACTTGGAACGAGAAACTGAGCATAGTGAGCTCAGTTGTTCGAGGGATAACATCACAGTCTGATATGTCGAAGAAGAATCTCAATGATGAATTAGACAGGGAATCAAGTACAAGTGATGGCACATTTCAGCTTTATAAGCAGCTAAGTTCTTCATATCCTTCACTCCTACAACCTCTTATACACGAGCGAGACACTTACCTTGCATGGTCTTTAAAGAGGAGCAAAGCTGTGAATAAGAGTAAGAGAGTAGTTGGGGTTATTGGAAAGGGACACATGAATGGTGTGATATATGCCTTACTGGCTGACCTGGGAGACCTAAGGTTTAGGGACCTTGTAGGACAGAGGCCTACAGGTACTACTGATGCTTCTTCTAATGGTTGGATTGTGAAGTTGGTCCAGGACTTGATTAGAGATACTGTCATTGCCGGCCTCCTGTGGGCATTATATGAGCAGTTCATAAAAGGTGGGTTAGAGAGTCCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TraB

Protein Analysis

394

Amino Acids

43.33

Weight (kDa)

8.53

Isoelectric Point (pI)

46.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TraB_PrgY_gumN PF01963 82 - 327 6.8e-21 TraB/PrgY/gumN family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011453)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52030 AT5G52030
fragaria_vesca FvH4_7g28970 FvH4_7g28970
malus_domestica MD01G1196400.v1.1
prunus_persica Prupe.2G289700_v2.0.a1 Prupe.2G289700_v2.0.a1 Prupe.2G289700_v2.0.a1
pyrus_communis pycom01g20690
rosa_chinensis RchiOBHm_Chr1g0376671
rosa_laevigata RLG00000026582
rosa_multiflora Rmu_sc0009691.1_g000004
rosa_roxburghii Rroxscaffold_4G00281900
rosa_rugosa Rorug01G0397200 Rorug01G0397300
rosa_samantha Rh1AG414300 Rh1BG373600 Rh1CG387500 Rh1DG404500
rosa_wichuraiana Rw1G036330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 831
AccII CGCG 1 cut(s) 330
AciI CCGC 3 cut(s) 37, 104, 314
AclWI GGATC 1 cut(s) 660
AcsI RAATTY 2 cut(s) 129, 688
AcuI CTGAAG 1 cut(s) 642
AfaI GTAC 3 cut(s) 537, 805, 1051
AfiI CCNNNNNNNGG 1 cut(s) 1132
AflIII ACRYGT 1 cut(s) 328
AgsI TTSAA 3 cut(s) 14, 665, 677
AjnI CCWGG 2 cut(s) 1002, 1092
AjuI GAANNNNNNNTTGG 4 cut(s) 35, 67, 569, 601
AloI GAACNNNNNNTCC 2 cut(s) 318, 350
AluBI AGCT 9 cut(s) 24, 201, 370, 386, 683, 726, 826, 838, 923
AluI AGCT 9 cut(s) 24, 201, 370, 386, 683, 726, 826, 838, 923
Alw21I GWGCWC 2 cut(s) 637, 728
Alw26I GTCTC 2 cut(s) 879, 1002
AlwI GGATC 1 cut(s) 660
AoxI GGCC 5 cut(s) 270, 430, 483, 1040, 1123
ApeKI GCWGC 1 cut(s) 835
ApoI RAATTY 2 cut(s) 129, 688
ArsI GACNNNNNNTTYG 2 cut(s) 318, 350
AspS9I GGNCC 5 cut(s) 230, 334, 483, 1024, 1090
AsuC2I CCSGG 2 cut(s) 239, 338
AsuHPI GGTGA 3 cut(s) 49, 431, 602
AvaII GGWCC 4 cut(s) 230, 334, 1024, 1090
AxyI CCTNAGG 1 cut(s) 1013
BanII GRGCYC 1 cut(s) 728
BauI CACGAG 1 cut(s) 878
Bbv12I GWGCWC 2 cut(s) 637, 728
BbvI GCAGC 1 cut(s) 847
BccI CCATC 3 cut(s) 98, 281, 806
BceAI ACGGC 1 cut(s) 470
BciT130I CCWGG 2 cut(s) 1004, 1094
BcnI CCSGG 2 cut(s) 239, 338
BcoDI GTCTC 2 cut(s) 879, 1002
BfaI CTAG 1 cut(s) 524
BfmI CTRYAG 1 cut(s) 1044
BglI GCCNNNNNGGC 1 cut(s) 995
BisI GCNGC 1 cut(s) 836
BlsI GCNGC 1 cut(s) 837
BmcAI AGTACT 1 cut(s) 537
Bme1390I CCNGG 4 cut(s) 239, 338, 1004, 1094
Bme18I GGWCC 4 cut(s) 230, 334, 1024, 1090
BmgT120I GGNCC 5 cut(s) 230, 334, 483, 1024, 1090
BmiI GGNNCC 4 cut(s) 232, 289, 484, 1025
BmrFI CCNGG 4 cut(s) 239, 338, 1004, 1094
BmrI ACTGGG 2 cut(s) 41, 480
BmsI GCATC 2 cut(s) 394, 1048
BmuI ACTGGG 2 cut(s) 41, 480
BpuEI CTTGAG 2 cut(s) 127, 288
BpuMI CCSGG 2 cut(s) 239, 338
BsaI GGTCTC 1 cut(s) 1002
BsaJI CCNNGG 1 cut(s) 1003
Bsc4I CCNNNNNNNGG 1 cut(s) 1132
Bse118I RCCGGY 2 cut(s) 222, 1121
Bse1I ACTGG 3 cut(s) 47, 475, 999
Bse21I CCTNAGG 1 cut(s) 1013
Bse3DI GCAATG 1 cut(s) 1116
BseBI CCWGG 2 cut(s) 1004, 1094
BseDI CCNNGG 1 cut(s) 1003
BseGI GGATG 1 cut(s) 566
BseLI CCNNNNNNNGG 1 cut(s) 1132
BseMI GCAATG 1 cut(s) 1116
BseMII CTCAG 5 cut(s) 85, 180, 452, 704, 741
BseNI ACTGG 3 cut(s) 47, 475, 999
BseRI GAGGAG 1 cut(s) 928
BseXI GCAGC 1 cut(s) 847
BseYI CCCAGC 1 cut(s) 386
Bsh1236I CGCG 1 cut(s) 330
BshFI GGCC 5 cut(s) 272, 432, 485, 1042, 1125
BsiHKAI GWGCWC 2 cut(s) 637, 728
BsiSI CCGG 7 cut(s) 107, 223, 239, 266, 337, 350, 1122
BslFI GGGAC 4 cut(s) 216, 221, 978, 1037
BslI CCNNNNNNNGG 1 cut(s) 1132
BsmAI GTCTC 2 cut(s) 879, 1002
BsmFI GGGAC 4 cut(s) 216, 221, 978, 1037
BsnI GGCC 5 cut(s) 272, 432, 485, 1042, 1125
Bso31I GGTCTC 1 cut(s) 1002
Bsp1286I GDGCHC 2 cut(s) 637, 728
Bsp143I GATC 3 cut(s) 210, 602, 652
BspACI CCGC 3 cut(s) 37, 104, 314
BspANI GGCC 5 cut(s) 272, 432, 485, 1042, 1125
BspCNI CTCAG 5 cut(s) 84, 181, 453, 705, 740
BspFNI CGCG 1 cut(s) 330
BspLI GGNNCC 4 cut(s) 232, 289, 484, 1025
BspPI GGATC 1 cut(s) 660
BspQI GCTCTTC 1 cut(s) 212
BspTNI GGTCTC 1 cut(s) 1002
BsrDI GCAATG 1 cut(s) 1116
BsrFI RCCGGY 2 cut(s) 222, 1121
BsrI ACTGG 3 cut(s) 47, 475, 999
BssAI RCCGGY 2 cut(s) 222, 1121
BssECI CCNNGG 1 cut(s) 1003
BssMI GATC 3 cut(s) 210, 602, 652
BssSI CACGAG 1 cut(s) 878
Bst2BI CACGAG 1 cut(s) 878
Bst2UI CCWGG 2 cut(s) 1004, 1094
Bst4CI ACNGT 3 cut(s) 540, 753, 1114
Bst6I CTCTTC 1 cut(s) 212
BstC8I GCNNGC 1 cut(s) 1123
BstDEI CTNAG 7 cut(s) 71, 189, 461, 713, 727, 839, 1013
BstF5I GGATG 1 cut(s) 566
BstFNI CGCG 1 cut(s) 330
BstKTI GATC 3 cut(s) 213, 605, 655
BstMAI GTCTC 2 cut(s) 879, 1002
BstMBI GATC 3 cut(s) 210, 602, 652
BstMWI GCNNNNNNNGC 6 cut(s) 155, 248, 614, 723, 832, 995
BstNI CCWGG 2 cut(s) 1004, 1094
BstSCI CCNGG 4 cut(s) 237, 336, 1002, 1092
BstSFI CTRYAG 1 cut(s) 1044
BstUI CGCG 1 cut(s) 330
BstV1I GCAGC 1 cut(s) 847
BstXI CCANNNNNNTGG 1 cut(s) 280
Bsu36I CCTNAGG 1 cut(s) 1013
BsuRI GGCC 5 cut(s) 272, 432, 485, 1042, 1125
BtsCI GGATG 1 cut(s) 566
BtsI GCAGTG 1 cut(s) 348
BtsIMutI CAGTG 1 cut(s) 348
Cac8I GCNNGC 1 cut(s) 1123
Cfr10I RCCGGY 2 cut(s) 222, 1121
Cfr13I GGNCC 5 cut(s) 230, 334, 483, 1024, 1090
Csp6I GTAC 3 cut(s) 536, 804, 1050
CviAII CATG 5 cut(s) 243, 412, 416, 900, 970
CviQI GTAC 3 cut(s) 536, 804, 1050
DdeI CTNAG 7 cut(s) 71, 189, 461, 713, 727, 839, 1013
DpnI GATC 3 cut(s) 212, 604, 654
DpnII GATC 3 cut(s) 210, 602, 652
DraI TTTAAA 1 cut(s) 909
Eam1104I CTCTTC 1 cut(s) 212
EarI CTCTTC 1 cut(s) 212
Ecl136II GAGCTC 1 cut(s) 726
Eco147I AGGCCT 1 cut(s) 1042
Eco24I GRGCYC 1 cut(s) 728
Eco31I GGTCTC 1 cut(s) 1002
Eco47I GGWCC 4 cut(s) 230, 334, 1024, 1090
Eco53kI GAGCTC 1 cut(s) 726
Eco57I CTGAAG 1 cut(s) 642
Eco81I CCTNAGG 1 cut(s) 1013
EcoICRI GAGCTC 1 cut(s) 726
EcoO109I RGGNCCY 1 cut(s) 1024
EcoRI GAATTC 1 cut(s) 688
EcoRII CCWGG 2 cut(s) 1002, 1092
EcoT22I ATGCAT 1 cut(s) 417
EcoT38I GRGCYC 1 cut(s) 728
FaeI CATG 5 cut(s) 246, 415, 419, 903, 973
FaqI GGGAC 4 cut(s) 216, 221, 978, 1037
FatI CATG 5 cut(s) 242, 411, 415, 899, 969
Fnu4HI GCNGC 1 cut(s) 836
FokI GGATG 1 cut(s) 553
FriOI GRGCYC 1 cut(s) 728
Fsp4HI GCNGC 1 cut(s) 836
FspBI CTAG 1 cut(s) 524
GluI GCNGC 1 cut(s) 836
GsaI CCCAGC 1 cut(s) 390
HaeIII GGCC 5 cut(s) 272, 432, 485, 1042, 1125
HapII CCGG 7 cut(s) 107, 223, 239, 266, 337, 350, 1122
Hin1II CATG 5 cut(s) 246, 415, 419, 903, 973
HindIII AAGCTT 1 cut(s) 22
HinfI GANTC 5 cut(s) 140, 308, 772, 797, 1171
HpaII CCGG 7 cut(s) 107, 223, 239, 266, 337, 350, 1122
HphI GGTGA 3 cut(s) 49, 431, 602
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 8 cut(s) 74, 127, 287, 462, 571, 622, 696, 757
Hpy188III TCNNGA 4 cut(s) 144, 208, 214, 305
Hpy8I GTNNAC 1 cut(s) 139
Hpy99I CGWCG 1 cut(s) 263
HpyAV CCTTC 1 cut(s) 864
HpyCH4III ACNGT 3 cut(s) 540, 753, 1114
HpyCH4V TGCA 2 cut(s) 415, 899
HpyF10VI GCNNNNNNNGC 6 cut(s) 155, 248, 614, 723, 832, 995
HpyF3I CTNAG 7 cut(s) 71, 189, 461, 713, 727, 839, 1013
Hsp92II CATG 5 cut(s) 246, 415, 419, 903, 973
KroI GCCGGC 1 cut(s) 1121
KroNI GCCGGC 1 cut(s) 1123
Kzo9I GATC 3 cut(s) 210, 602, 652
LguI GCTCTTC 1 cut(s) 212
LmnI GCTCC 3 cut(s) 198, 367, 915
Lsp1109I GCAGC 1 cut(s) 847
LweI GCATC 2 cut(s) 394, 1048
MaeI CTAG 1 cut(s) 524
MaeIII GTNAC 1 cut(s) 528
MalI GATC 3 cut(s) 212, 604, 654
MboI GATC 3 cut(s) 210, 602, 652
MboII GAAGA 6 cut(s) 229, 635, 778, 781, 837, 1056
MfeI CAATTG 1 cut(s) 660
MhlI GDGCHC 2 cut(s) 637, 728
MluCI AATT 8 cut(s) 30, 129, 437, 639, 660, 666, 688, 785
MluI ACGCGT 1 cut(s) 328
MlyI GAGTC 3 cut(s) 134, 302, 1180
MmeI TCCRAC 3 cut(s) 265, 594, 1055
Mph1103I ATGCAT 1 cut(s) 417
MroNI GCCGGC 1 cut(s) 1121
MseI TTAA 2 cut(s) 440, 908
MslI CAYNNNNRTG 1 cut(s) 972
MspI CCGG 7 cut(s) 107, 223, 239, 266, 337, 350, 1122
MspR9I CCNGG 4 cut(s) 239, 338, 1004, 1094
MunI CAATTG 1 cut(s) 660
MvaI CCWGG 2 cut(s) 1004, 1094
MvnI CGCG 1 cut(s) 330
MwoI GCNNNNNNNGC 6 cut(s) 155, 248, 614, 723, 832, 995
NaeI GCCGGC 1 cut(s) 1123
NciI CCSGG 2 cut(s) 239, 338
NdeII GATC 3 cut(s) 210, 602, 652
NgoMIV GCCGGC 1 cut(s) 1121
NlaIII CATG 5 cut(s) 246, 415, 419, 903, 973
NlaIV GGNNCC 4 cut(s) 232, 289, 484, 1025
NsiI ATGCAT 1 cut(s) 417
PceI AGGCCT 1 cut(s) 1042
PciSI GCTCTTC 1 cut(s) 212
PcsI WCGNNNNNNNCGW 1 cut(s) 607
PdiI GCCGGC 1 cut(s) 1123
PfeI GAWTC 2 cut(s) 772, 797
PfoI TCCNGGA 1 cut(s) 1092
PkrI GCNGC 1 cut(s) 837
PleI GAGTC 3 cut(s) 134, 302, 1179
PpsI GAGTC 3 cut(s) 134, 302, 1179
PpuMI RGGWCCY 1 cut(s) 1024
PsiI TTATAA 1 cut(s) 831
Psp124BI GAGCTC 1 cut(s) 728
Psp5II RGGWCCY 1 cut(s) 1024
Psp6I CCWGG 2 cut(s) 1002, 1092
PspFI CCCAGC 1 cut(s) 386
PspGI CCWGG 2 cut(s) 1002, 1092
PspN4I GGNNCC 4 cut(s) 232, 289, 484, 1025
PspPI GGNCC 5 cut(s) 230, 334, 483, 1024, 1090
PspPPI RGGWCCY 1 cut(s) 1024
RsaI GTAC 3 cut(s) 537, 805, 1051
RsaNI GTAC 3 cut(s) 536, 804, 1050
RseI CAYNNNNRTG 1 cut(s) 972
SacI GAGCTC 1 cut(s) 728
SapI GCTCTTC 1 cut(s) 212
SaqAI TTAA 2 cut(s) 440, 908
SatI GCNGC 1 cut(s) 836
Sau3AI GATC 3 cut(s) 210, 602, 652
Sau96I GGNCC 5 cut(s) 230, 334, 483, 1024, 1090
ScaI AGTACT 1 cut(s) 537
SchI GAGTC 3 cut(s) 134, 302, 1180
ScrFI CCNGG 4 cut(s) 239, 338, 1004, 1094
SduI GDGCHC 2 cut(s) 637, 728
SfaNI GCATC 2 cut(s) 394, 1048
SfcI CTRYAG 1 cut(s) 1044
SinI GGWCC 4 cut(s) 230, 334, 1024, 1090
SmiMI CAYNNNNRTG 1 cut(s) 972
SmlI CTYRAG 2 cut(s) 142, 303
SmoI CTYRAG 2 cut(s) 142, 303
Sse9I AATT 8 cut(s) 30, 129, 437, 639, 660, 666, 688, 785
SseBI AGGCCT 1 cut(s) 1042
SsiI CCGC 3 cut(s) 37, 104, 314
SspMI CTAG 1 cut(s) 524
SstI GAGCTC 1 cut(s) 728
StuI AGGCCT 1 cut(s) 1042
StyD4I CCNGG 4 cut(s) 237, 336, 1002, 1092
TaaI ACNGT 3 cut(s) 540, 753, 1114
TaqI TCGA 8 cut(s) 213, 261, 324, 493, 601, 610, 736, 764
TaqII GACCGA 1 cut(s) 218
TasI AATT 8 cut(s) 30, 129, 437, 639, 660, 666, 688, 785
TatI WGTACW 2 cut(s) 535, 803
TfiI GAWTC 2 cut(s) 772, 797
Tru1I TTAA 2 cut(s) 440, 908
Tru9I TTAA 2 cut(s) 440, 908
TscAI CASTG 1 cut(s) 348
TseI GCWGC 1 cut(s) 835
TspDTI ATGAA 5 cut(s) 555, 798, 837, 986, 1141
TspRI CASTG 1 cut(s) 348
VpaK11BI GGWCC 4 cut(s) 230, 334, 1024, 1090
XapI RAATTY 2 cut(s) 129, 688
XspI CTAG 1 cut(s) 524
ZrmI AGTACT 1 cut(s) 537
Zsp2I ATGCAT 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.