Rroxscaffold_4G00281900

TraB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0011453
Physical Location & Seq
Reverse (-)
4102450 .. 4104865
2416 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00281900.1

Sequence Viewer

Length: 1161 bp
ATGGAGACCATTCACTCAACCTTTCCAATTTTCCACACAAACCCAGTTTTCTTCACCCGCAAGCCTCTTAGACCCATCAAGGTTTCCATCAAACCTCCACCACCAGACTTCGATTTCAGGTCAGAAATATTGGAAGACTCGAGAGCCACAATCGCAAAAACTTACCCTGAATTGCTTGATTTGGTTGAAAATGGGAGCTTGTTCTTGGTCGATAAAAGCCGGTTCGGCCCGGTTCCCGCATGGAGAACCGAGTTCGTTGAGCCTGAGGCGATATGGTTAGTTGGAACCACTCATATTTCTCAGGACTCTGCTCTGGAGGTTGAGCGTGTAGTCCGGGCAGTGAAACCTGATAATGTGGTTGTGGAGCTATGCAGAAGCAGGCAACCCATTTTCAGAGCTGGGATTATGTATGCTTCCATGGATGATGAGTCCGGTCAACAATTGAAGTCGAACATGTTCTCTCTGAGTGGAAATGGATTCTTTGGAGCCGTTGGTCGTAGCATAAACTTGGGGGGTCAAACTGCTCTGGCATTACGCGTACTCTTGGCGGTTTTCTCTTCAAAGATCTCATCTGATACCAACCGTCCTTTCGGTGATGAGTTCCGCGCCGCTCGTAAAGCCTCTGGAGAAGTTGGTGCTCAAATTGTTTTGGGGGATCGCCCAATTGAAATATCTCTCGAAAGGGCTTGGAATTCTCTGACATGGACAGAGAAACTGAGCTTAGTGACATCGGTTTTTCGTGGGATAACATCACCATCTGATATGTCCCAAAAGAGTCTCAAGGATTTAAGTTCAAGTGACAGCACATTTCAGCTGTATGAGCAACTAAGTTCTTCATATCCCTCACTCCTGCAACCTCTTATACATGAACGAGACACCTACCTTGCATGGTCTTTAAAGAGAAGCAAAGCTGTTAATAAGAGTAAGAGAGTGGTGGGGGTTATTGGAAAAGGCCACATGAATGGTGTAATCTATGCACTATTAGCTGACTCGGGAGACCTACGGTTTCGAGACCTTGTAGGAGGACAGAGGCCTTCATGGAGTTCTAACGATGCTGCTTCTAATGGCTGGGTTGTCAGGTTGCTCAAGGACTTGGTTAGAGATACTATCGTCGGCATTGTCTTGTGGGCATTATATGAGCAGATCAAAGATGGGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TraB

Protein Analysis

386

Amino Acids

42.89

Weight (kDa)

8.82

Isoelectric Point (pI)

40.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TraB_PrgY_gumN PF01963 81 - 323 1.8e-21 TraB/PrgY/gumN family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011453)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52030 AT5G52030
fragaria_vesca FvH4_7g28970 FvH4_7g28970
malus_domestica MD01G1196400.v1.1
prunus_persica Prupe.2G289700_v2.0.a1 Prupe.2G289700_v2.0.a1 Prupe.2G289700_v2.0.a1
pyrus_communis pycom01g20690
rosa_chinensis RchiOBHm_Chr1g0376671
rosa_laevigata RLG00000026582
rosa_multiflora Rmu_sc0009691.1_g000004
rosa_roxburghii Rroxscaffold_4G00281900
rosa_rugosa Rorug01G0397200 Rorug01G0397300
rosa_samantha Rh1AG414300 Rh1BG373600 Rh1CG387500 Rh1DG404500
rosa_wichuraiana Rw1G036330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 611
AccII CGCG 2 cut(s) 537, 606
AciI CCGC 5 cut(s) 58, 237, 548, 604, 609
AclWI GGATC 1 cut(s) 663
AcsI RAATTY 1 cut(s) 691
AfaI GTAC 1 cut(s) 540
AflIII ACRYGT 2 cut(s) 453, 535
AgsI TTSAA 5 cut(s) 188, 445, 561, 668, 795
AjuI GAANNNNNNNTTGG 2 cut(s) 572, 604
AluBI AGCT 7 cut(s) 198, 367, 398, 720, 814, 911, 986
AluI AGCT 7 cut(s) 198, 367, 398, 720, 814, 911, 986
Alw21I GWGCWC 1 cut(s) 640
Alw26I GTCTC 4 cut(s) 782, 867, 990, 1005
AlwI GGATC 1 cut(s) 663
Ama87I CYCGRG 2 cut(s) 139, 991
AoxI GGCC 3 cut(s) 226, 952, 1031
ApeKI GCWGC 1 cut(s) 1055
ApoI RAATTY 1 cut(s) 691
Asp700I GAANNNNTTC 1 cut(s) 455
AspLEI GCGC 1 cut(s) 608
AspS9I GGNCC 1 cut(s) 227
AsuC2I CCSGG 2 cut(s) 230, 335
AsuHPI GGTGA 3 cut(s) 46, 605, 744
AvaI CYCGRG 2 cut(s) 139, 991
AxyI CCTNAGG 1 cut(s) 264
BaeI ACNNNNGTAYC 2 cut(s) 1095, 1128
BbsI GAAGAC 1 cut(s) 141
Bbv12I GWGCWC 1 cut(s) 640
BbvI GCAGC 1 cut(s) 1042
BccI CCATC 4 cut(s) 83, 95, 763, 1145
BceAI ACGGC 1 cut(s) 473
BcnI CCSGG 2 cut(s) 230, 335
BcoDI GTCTC 4 cut(s) 782, 867, 990, 1005
BglI GCCNNNNNGGC 1 cut(s) 225
BglII AGATCT 1 cut(s) 564
BisI GCNGC 2 cut(s) 609, 1056
BlsI GCNGC 2 cut(s) 610, 1057
Bme1390I CCNGG 2 cut(s) 230, 335
BmeT110I CYCGRG 2 cut(s) 139, 991
BmgT120I GGNCC 1 cut(s) 227
BmiI GGNNCC 3 cut(s) 234, 286, 487
BmrFI CCNGG 2 cut(s) 230, 335
BmrI ACTGGG 1 cut(s) 38
BmsI GCATC 1 cut(s) 1042
BmuI ACTGGG 1 cut(s) 38
BpiI GAAGAC 1 cut(s) 141
BpmI CTGGAG 2 cut(s) 335, 645
BpuEI CTTGAG 2 cut(s) 764, 1070
BpuMI CCSGG 2 cut(s) 230, 335
BsaI GGTCTC 2 cut(s) 990, 1005
BsaJI CCNNGG 1 cut(s) 417
BsaWI WCCGGW 1 cut(s) 431
Bse118I RCCGGY 1 cut(s) 219
Bse1I ACTGG 1 cut(s) 44
Bse21I CCTNAGG 1 cut(s) 264
BseDI CCNNGG 1 cut(s) 417
BseGI GGATG 1 cut(s) 427
BseMII CTCAG 4 cut(s) 255, 314, 455, 707
BseNI ACTGG 1 cut(s) 44
BseXI GCAGC 1 cut(s) 1042
BseYI CCCAGC 2 cut(s) 398, 1068
Bsh1236I CGCG 2 cut(s) 537, 606
BshFI GGCC 3 cut(s) 228, 954, 1033
BsiHKAI GWGCWC 1 cut(s) 640
BsiHKCI CYCGRG 2 cut(s) 139, 991
BsiSI CCGG 4 cut(s) 220, 230, 334, 432
BslFI GGGAC 1 cut(s) 751
BsmAI GTCTC 4 cut(s) 782, 867, 990, 1005
BsmFI GGGAC 1 cut(s) 751
BsnI GGCC 3 cut(s) 228, 954, 1033
Bso31I GGTCTC 2 cut(s) 990, 1005
BsoBI CYCGRG 2 cut(s) 139, 991
Bsp1286I GDGCHC 1 cut(s) 640
Bsp143I GATC 3 cut(s) 564, 655, 1143
Bsp19I CCATGG 1 cut(s) 417
BspACI CCGC 5 cut(s) 58, 237, 548, 604, 609
BspANI GGCC 3 cut(s) 228, 954, 1033
BspCNI CTCAG 4 cut(s) 256, 313, 456, 708
BspFNI CGCG 2 cut(s) 537, 606
BspLI GGNNCC 3 cut(s) 234, 286, 487
BspPI GGATC 1 cut(s) 663
BspTNI GGTCTC 2 cut(s) 990, 1005
BsrBI CCGCTC 1 cut(s) 611
BsrFI RCCGGY 1 cut(s) 219
BsrI ACTGG 1 cut(s) 44
BssAI RCCGGY 1 cut(s) 219
BssECI CCNNGG 1 cut(s) 417
BssMI GATC 3 cut(s) 564, 655, 1143
BssT1I CCWWGG 1 cut(s) 417
Bst4CI ACNGT 2 cut(s) 584, 1005
Bst6I CTCTTC 1 cut(s) 562
BstC8I GCNNGC 2 cut(s) 62, 380
BstDEI CTNAG 7 cut(s) 68, 264, 300, 464, 716, 721, 827
BstDSI CCRYGG 1 cut(s) 417
BstF5I GGATG 1 cut(s) 427
BstFNI CGCG 2 cut(s) 537, 606
BstHHI GCGC 1 cut(s) 608
BstKTI GATC 3 cut(s) 567, 658, 1146
BstMAI GTCTC 4 cut(s) 782, 867, 990, 1005
BstMBI GATC 3 cut(s) 564, 655, 1143
BstMWI GCNNNNNNNGC 5 cut(s) 152, 225, 617, 820, 983
BstNSI RCATGY 1 cut(s) 457
BstSCI CCNGG 2 cut(s) 228, 333
BstUI CGCG 2 cut(s) 537, 606
BstV1I GCAGC 1 cut(s) 1042
BstV2I GAAGAC 1 cut(s) 141
BstX2I RGATCY 1 cut(s) 564
BstXI CCANNNNNNTGG 1 cut(s) 962
BstYI RGATCY 1 cut(s) 564
Bsu36I CCTNAGG 1 cut(s) 264
BsuRI GGCC 3 cut(s) 228, 954, 1033
BtgI CCRYGG 1 cut(s) 417
BtsCI GGATG 1 cut(s) 427
BtsI GCAGTG 1 cut(s) 345
BtsIMutI CAGTG 1 cut(s) 345
Cac8I GCNNGC 2 cut(s) 62, 380
CfoI GCGC 1 cut(s) 608
Cfr10I RCCGGY 1 cut(s) 219
Cfr13I GGNCC 1 cut(s) 227
Csp6I GTAC 1 cut(s) 539
CviAII CATG 8 cut(s) 240, 418, 454, 702, 866, 888, 958, 1038
CviQI GTAC 1 cut(s) 539
DdeI CTNAG 7 cut(s) 68, 264, 300, 464, 716, 721, 827
DpnI GATC 3 cut(s) 566, 657, 1145
DpnII GATC 3 cut(s) 564, 655, 1143
DraI TTTAAA 1 cut(s) 897
Eam1104I CTCTTC 1 cut(s) 562
EarI CTCTTC 1 cut(s) 562
Eco130I CCWWGG 1 cut(s) 417
Eco147I AGGCCT 1 cut(s) 1033
Eco31I GGTCTC 2 cut(s) 990, 1005
Eco81I CCTNAGG 1 cut(s) 264
Eco88I CYCGRG 2 cut(s) 139, 991
EcoRI GAATTC 1 cut(s) 691
EcoT14I CCWWGG 1 cut(s) 417
ErhI CCWWGG 1 cut(s) 417
FaeI CATG 8 cut(s) 243, 421, 457, 705, 869, 891, 961, 1041
FaqI GGGAC 1 cut(s) 751
FatI CATG 8 cut(s) 239, 417, 453, 701, 865, 887, 957, 1037
FauI CCCGC 2 cut(s) 65, 244
Fnu4HI GCNGC 2 cut(s) 609, 1056
FokI GGATG 1 cut(s) 434
Fsp4HI GCNGC 2 cut(s) 609, 1056
GlaI GCGC 1 cut(s) 607
GluI GCNGC 2 cut(s) 609, 1056
GsaI CCCAGC 2 cut(s) 402, 1072
GsuI CTGGAG 2 cut(s) 335, 645
HaeIII GGCC 3 cut(s) 228, 954, 1033
HapII CCGG 4 cut(s) 220, 230, 334, 432
HhaI GCGC 1 cut(s) 608
Hin1II CATG 8 cut(s) 243, 421, 457, 705, 869, 891, 961, 1041
Hin6I GCGC 1 cut(s) 606
HinP1I GCGC 1 cut(s) 606
HincII GTYRAC 1 cut(s) 437
HindII GTYRAC 1 cut(s) 437
HinfI GANTC 6 cut(s) 137, 305, 428, 477, 775, 989
HpaII CCGG 4 cut(s) 220, 230, 334, 432
HphI GGTGA 3 cut(s) 46, 605, 744
Hpy166II GTNNAC 1 cut(s) 437
Hpy188I TCNGA 6 cut(s) 124, 395, 465, 574, 699, 760
Hpy188III TCNNGA 7 cut(s) 141, 302, 314, 624, 677, 993, 1010
Hpy8I GTNNAC 1 cut(s) 437
Hpy99I CGWCG 1 cut(s) 1115
HpyAV CCTTC 1 cut(s) 1044
HpyCH4III ACNGT 2 cut(s) 584, 1005
HpyCH4V TGCA 4 cut(s) 372, 853, 887, 977
HpyF10VI GCNNNNNNNGC 5 cut(s) 152, 225, 617, 820, 983
HpyF3I CTNAG 7 cut(s) 68, 264, 300, 464, 716, 721, 827
Hsp92II CATG 8 cut(s) 243, 421, 457, 705, 869, 891, 961, 1041
HspAI GCGC 1 cut(s) 606
Kzo9I GATC 3 cut(s) 564, 655, 1143
LmnI GCTCC 3 cut(s) 195, 364, 485
Lsp1109I GCAGC 1 cut(s) 1042
LweI GCATC 1 cut(s) 1042
MaeIII GTNAC 2 cut(s) 724, 797
MalI GATC 3 cut(s) 566, 657, 1145
MbiI CCGCTC 1 cut(s) 611
MboI GATC 3 cut(s) 564, 655, 1143
MboII GAAGA 4 cut(s) 43, 146, 549, 825
MfeI CAATTG 2 cut(s) 440, 663
MflI RGATCY 1 cut(s) 564
MhlI GDGCHC 1 cut(s) 640
MluCI AATT 6 cut(s) 27, 170, 440, 642, 663, 691
MluI ACGCGT 1 cut(s) 535
MlyI GAGTC 5 cut(s) 131, 299, 437, 784, 983
MmeI TCCRAC 1 cut(s) 262
MnlI CCTC 9 cut(s) 75, 105, 259, 310, 631, 853, 867, 1016, 1023
MroXI GAANNNNTTC 1 cut(s) 455
MseI TTAA 3 cut(s) 788, 896, 915
MslI CAYNNNNRTG 1 cut(s) 960
MspA1I CMGCKG 1 cut(s) 814
MspI CCGG 4 cut(s) 220, 230, 334, 432
MspR9I CCNGG 2 cut(s) 230, 335
MunI CAATTG 2 cut(s) 440, 663
MvnI CGCG 2 cut(s) 537, 606
MwoI GCNNNNNNNGC 5 cut(s) 152, 225, 617, 820, 983
NciI CCSGG 2 cut(s) 230, 335
NcoI CCATGG 1 cut(s) 417
NdeII GATC 3 cut(s) 564, 655, 1143
NlaIII CATG 8 cut(s) 243, 421, 457, 705, 869, 891, 961, 1041
NlaIV GGNNCC 3 cut(s) 234, 286, 487
NmuCI GTSAC 2 cut(s) 724, 797
NspI RCATGY 1 cut(s) 457
PaeR7I CTCGAG 1 cut(s) 139
PceI AGGCCT 1 cut(s) 1033
PciI ACATGT 1 cut(s) 453
PdmI GAANNNNTTC 1 cut(s) 455
PfeI GAWTC 1 cut(s) 477
PkrI GCNGC 2 cut(s) 610, 1057
PleI GAGTC 5 cut(s) 131, 299, 436, 783, 983
PpsI GAGTC 5 cut(s) 131, 299, 436, 783, 983
PscI ACATGT 1 cut(s) 453
PspFI CCCAGC 2 cut(s) 398, 1068
PspN4I GGNNCC 3 cut(s) 234, 286, 487
PspPI GGNCC 1 cut(s) 227
PsuI RGATCY 1 cut(s) 564
PvuII CAGCTG 1 cut(s) 814
RsaI GTAC 1 cut(s) 540
RsaNI GTAC 1 cut(s) 539
RseI CAYNNNNRTG 1 cut(s) 960
SaqAI TTAA 3 cut(s) 788, 896, 915
SatI GCNGC 2 cut(s) 609, 1056
Sau3AI GATC 3 cut(s) 564, 655, 1143
Sau96I GGNCC 1 cut(s) 227
SchI GAGTC 5 cut(s) 131, 299, 437, 784, 983
ScrFI CCNGG 2 cut(s) 230, 335
SduI GDGCHC 1 cut(s) 640
SfaNI GCATC 1 cut(s) 1042
Sfr274I CTCGAG 1 cut(s) 139
SlaI CTCGAG 1 cut(s) 139
SmiMI CAYNNNNRTG 1 cut(s) 960
SmlI CTYRAG 3 cut(s) 139, 779, 1085
SmoI CTYRAG 3 cut(s) 139, 779, 1085
Sse9I AATT 6 cut(s) 27, 170, 440, 642, 663, 691
SseBI AGGCCT 1 cut(s) 1033
SsiI CCGC 5 cut(s) 58, 237, 548, 604, 609
SspI AATATT 1 cut(s) 129
StuI AGGCCT 1 cut(s) 1033
StyD4I CCNGG 2 cut(s) 228, 333
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 2 cut(s) 584, 1005
TaqI TCGA 6 cut(s) 111, 140, 210, 449, 678, 1009
TasI AATT 6 cut(s) 27, 170, 440, 642, 663, 691
TauI GCSGC 1 cut(s) 611
TfiI GAWTC 1 cut(s) 477
Tru1I TTAA 3 cut(s) 788, 896, 915
Tru9I TTAA 3 cut(s) 788, 896, 915
TscAI CASTG 1 cut(s) 345
TseFI GTSAC 2 cut(s) 724, 797
TseI GCWGC 1 cut(s) 1055
Tsp45I GTSAC 2 cut(s) 724, 797
TspDTI ATGAA 4 cut(s) 825, 882, 974, 1026
TspRI CASTG 1 cut(s) 345
XapI RAATTY 1 cut(s) 691
XceI RCATGY 1 cut(s) 457
XhoI CTCGAG 1 cut(s) 139
XmnI GAANNNNTTC 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.